IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2541	 46.87	0	2896041..2897111	+	356	88603863	-	Mhun_2625	-	tetratricopeptide TPR_2
2542	 51.35	+1	2897203..2899800	+	865	88603864	-	Mhun_2626	-	valyl-tRNA synthetase
2543	 45.31	0	2899908..2900951	+	347	88603865	-	Mhun_2627	-	hypothetical protein
2544	 41.00	0	2900948..2901208	+	86	88603866	-	Mhun_2628	-	hypothetical protein
2545	 54.27	+1	2901217..2901837	-	206	88603867	tdk	Mhun_2629	-	thymidylate kinase
2546	 48.90	0	2901822..2902502	-	226	88603868	-	Mhun_2630	-	histidine biosynthesis
2547	 46.43	0	2902547..2903233	+	228	88603869	-	Mhun_2631	-	hypothetical protein
2548	 52.50	+1	2903235..2904695	+	486	88603870	-	Mhun_2632	-	inosine-5'-monophosphate dehydrogenase
2549	 51.53	+1	2904729..2905349	+	206	88603871	-	Mhun_2633	-	ArsR family transcriptional regulator
2550	 50.73	0	2905339..2905815	+	158	88603872	-	Mhun_2634	-	hypothetical protein
2551	 50.12	0	2905924..2907216	+	430	88603873	-	Mhun_2635	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2552	 46.32	0	2907351..2910506	+	1051	88603874	-	Mhun_2636	-	signal transduction histidine kinase
2553	 47.69	0	2910490..2911875	+	461	88603875	-	Mhun_2637	-	putative PAS/PAC sensor protein
2554	 43.59	0	2911883..2912545	-	220	88603876	-	Mhun_2638	-	response regulator receiver domain-containing protein
2555	 45.59	0	2912733..2913401	+	222	88603877	-	Mhun_2639	-	cobalamin B12-binding
2556	 45.14	0	2913373..2914566	+	397	88603878	-	Mhun_2640	-	histidine kinase
2557	 42.68	0	2914615..2915085	+	156	88603879	-	Mhun_2641	-	hypothetical protein
2558	 45.14	0	2915121..2916653	-	510	88603880	-	Mhun_2642	-	multi-sensor signal transduction histidine kinase
2559	 34.82	-2	2916770..2918380	+	536	88603881	-	Mhun_2643	-	transposase, IS4
2560	 37.32	-1	2918403..2918678	-	91	88603882	-	Mhun_2644	-	hypothetical protein
2561	 43.92	0	2918665..2919675	-	336	88603883	-	Mhun_2645	-	putative PAS/PAC sensor protein
2562	 43.31	0	2920666..2922138	+	490	88603884	-	Mhun_2646	-	RNA-directed DNA polymerase
2563	 54.12	+1	2922489..2922743	-	84	88603885	-	Mhun_2647	-	hypothetical protein
2564	 38.15	-1	2922826..2923074	+	82	88603886	-	Mhun_2648	-	hypothetical protein
2565	 38.21	-1	2923074..2923319	+	81	88603887	-	Mhun_2649	-	YcfA-like
2566	 48.46	0	2923333..2923689	-	118	88603888	-	Mhun_2650	-	hypothetical protein
2567	 48.37	0	2923689..2925743	-	684	88603889	-	Mhun_2651	-	hypothetical protein
2568	 54.30	+1	2925775..2926146	-	123	88603890	-	Mhun_2652	-	hypothetical protein
2569	 47.11	0	2926198..2927184	+	328	88603891	-	Mhun_2653	-	tetratricopeptide TPR_2
2570	 38.03	-1	2927408..2927641	+	77	88603892	-	Mhun_2654	-	hypothetical protein
2571	 35.58	-2	2927638..2927904	+	88	88603893	-	Mhun_2655	-	hypothetical protein
2572	 45.36	0	2928006..2928695	-	229	88603894	-	Mhun_2656	-	hypothetical protein
2573	 49.96	0	2929136..2930500	-	454	88603895	-	Mhun_2657	-	hypothetical protein
2574	 42.49	0	2930512..2930784	-	90	162139855	-	Mhun_2658	-	hypothetical protein
2575	 44.75	0	2930957..2933215	-	752	88603897	-	Mhun_2659	-	extracellular ligand-binding receptor
2576	 45.55	0	2933286..2933858	+	190	88603898	-	Mhun_2660	-	hypothetical protein
2577	 48.18	0	2933969..2934298	-	109	88603899	-	Mhun_2661	-	hypothetical protein
2578	 45.63	0	2934309..2934560	-	83	88603900	-	Mhun_2662	-	hypothetical protein
2579	 48.88	0	2934823..2937414	+	863	88603901	-	Mhun_2663	-	ATPase, E1-E2 type
2580	 53.70	+1	2937426..2937749	-	107	88603902	-	Mhun_2664	-	hypothetical protein
2581	 52.90	+1	2937755..2938030	-	91	88603903	-	Mhun_2665	-	hypothetical protein
2582	 47.85	0	2938147..2938938	+	263	88603904	-	Mhun_2666	-	FHA domain-containing protein
2583	 48.41	0	2938935..2940188	+	417	88603905	-	Mhun_2667	-	serine/threonine protein kinase
2584	 48.45	0	2940718..2943144	+	808	88603906	-	Mhun_2669	-	methyl-accepting chemotaxis sensory transducer
2585	 38.83	-1	2943405..2943677	-	90	88603907	-	Mhun_2670	-	hypothetical protein
2586	 45.37	0	2943844..2944707	+	287	88603908	-	Mhun_2671	-	response regulator receiver domain-containing protein
2587	 46.24	0	2944658..2946517	+	619	88603909	-	Mhun_2672	-	PAS/PAC sensor signal transduction histidine kinase
2588	 46.02	0	2946758..2947159	+	133	88603910	-	Mhun_2673	-	response regulator receiver domain-containing protein
2589	 47.41	0	2947267..2948346	-	359	88603911	-	Mhun_2674	-	hypothetical protein
2590	 39.81	-1	2948386..2948709	-	107	88603912	-	Mhun_2675	-	hypothetical protein
2591	 47.98	0	2948898..2949539	-	213	88603913	-	Mhun_2676	-	histidine kinase
2592	 47.37	0	2949630..2950256	-	208	88603914	-	Mhun_2677	-	hypothetical protein
2593	 46.02	0	2950293..2950970	-	225	88603915	-	Mhun_2678	-	putative PAS/PAC sensor protein
2594	 48.76	0	2951944..2952507	+	187	88603916	-	Mhun_2680	-	hypothetical protein
2595	 40.44	-1	2952508..2953746	-	412	88603917	-	Mhun_2681	-	secreted protein-like
2596	 44.28	0	2953974..2954585	+	203	88603918	-	Mhun_2682	-	CheC, inhibitor of MCP methylation
2597	 46.38	0	2954582..2955700	+	372	88603919	-	Mhun_2683	-	PAS/PAC sensor signal transduction histidine kinase
2598	 48.09	0	2955761..2956126	+	121	88603920	-	Mhun_2684	-	response regulator receiver domain-containing protein
2599	 45.17	0	2956123..2956722	+	199	88603921	-	Mhun_2685	-	CheC, inhibitor of MCP methylation
2600	 45.66	0	2956945..2957958	-	337	88603922	-	Mhun_2686	-	putative PAS/PAC sensor protein
2601	 46.14	0	2958191..2958838	-	215	88603923	-	Mhun_2687	-	signal transduction histidine kinase
2602	 46.13	0	2958840..2961653	-	937	88603924	-	Mhun_2688	-	putative PAS/PAC sensor protein
2603	 46.32	0	2962024..2963964	+	646	88603925	-	Mhun_2689	-	multi-sensor signal transduction histidine kinase
2604	 43.20	0	2963961..2964335	+	124	88603926	-	Mhun_2690	-	response regulator receiver domain-containing protein
2605	 44.30	0	2964343..2965500	+	385	88603927	-	Mhun_2691	-	putative PAS/PAC sensor protein
2606	 45.54	0	2965549..2966187	+	212	88603928	-	Mhun_2692	-	hypothetical protein
2607	 48.03	0	2966386..2968569	+	727	88603929	-	Mhun_2693	-	PAS/PAC sensor signal transduction histidine kinase
2608	 38.10	-1	2968657..2969538	+	293	88603930	-	Mhun_2694	-	hypothetical protein
2609	 37.49	-1	2969834..2970748	+	304	88603931	-	Mhun_2695	-	hypothetical protein
2610	 40.98	0	2971055..2971930	+	291	88603932	-	Mhun_2696	-	hypothetical protein
2611	 42.24	0	2971983..2972633	+	216	88603933	-	Mhun_2697	-	hypothetical protein
2612	 34.23	-2	2973952..2975730	+	592	88603934	-	Mhun_2698	-	hypothetical protein
2613	 35.32	-2	2975730..2976383	+	217	88603935	-	Mhun_2699	-	hypothetical protein
2614	 38.56	-1	2976631..2977491	+	286	88603936	-	Mhun_2700	-	hypothetical protein
2615	 34.91	-2	2977494..2977937	+	147	88603937	-	Mhun_2701	-	hypothetical protein
2616	 37.82	-1	2977954..2979111	+	385	88603938	-	Mhun_2702	-	hypothetical protein
2617	 45.61	0	2979632..2980201	+	189	88603939	-	Mhun_2703	-	hypothetical protein
2618	 41.96	0	2980527..2980781	-	84	88603940	-	Mhun_2704	-	hypothetical protein
2619	 38.83	-1	2981224..2981532	+	102	88603941	-	Mhun_2705	-	DNA polymerase, beta-like region
2620	 34.48	-2	2981560..2981820	+	86	88603942	-	Mhun_2706	-	hypothetical protein
2621	 45.30	0	2982163..2982396	+	77	88603943	-	Mhun_2707	-	hypothetical protein
2622	 39.33	-1	2982409..2982675	+	88	88603944	-	Mhun_2708	-	hypothetical protein
2623	 36.75	-1	2983023..2983256	-	77	88603945	-	Mhun_2709	-	hypothetical protein
2624	 43.69	0	2983365..2983673	-	102	88603946	-	Mhun_2710	-	hypothetical protein
2625	 39.20	-1	2983667..2985286	-	539	88603947	-	Mhun_2711	-	hypothetical protein
2626	 33.55	-2	2985772..2986236	-	154	88603948	-	Mhun_2712	-	nucleic acid binding protein
2627	 37.50	-1	2986221..2986412	-	63	88603949	-	Mhun_2713	-	hypothetical protein
2628	 40.24	-1	2986478..2986810	-	110	88603950	-	Mhun_2714	-	DNA polymerase, beta-like region
2629	 40.44	-1	2986918..2987142	-	74	88603951	-	Mhun_2715	-	YcfA-like
2630	 39.19	-1	2987129..2987350	-	73	88603952	-	Mhun_2716	-	hypothetical protein
2631	 42.21	0	2987503..2989125	+	540	88603953	-	Mhun_2717	-	hypothetical protein
2632	 40.61	-1	2989284..2989613	+	109	88603954	-	Mhun_2718	-	DNA polymerase, beta-like region
2633	 48.38	0	2990360..2992120	-	586	88603955	-	Mhun_2719	-	periplasmic sensor signal transduction histidine kinase
2634	 37.57	-1	2992276..2992464	+	62	88603956	-	Mhun_2720	-	hypothetical protein
2635	 39.72	-1	2992561..2992842	+	93	88603957	-	Mhun_2721	-	DNA polymerase, beta-like region
2636	 43.49	0	2992839..2993291	+	150	88603958	-	Mhun_2722	-	hypothetical protein
2637	 43.82	0	2993326..2993802	-	158	88603959	-	Mhun_2723	-	hypothetical protein
2638	 49.14	0	2993842..2995587	+	581	88603960	-	Mhun_2724	-	5'-nucleotidase-like
2639	 50.56	0	2995624..2998989	-	1121	88603961	-	Mhun_2725	-	protein kinase/helix-hairpin-helix DNA-binding domain-containing proteins
2640	 55.34	+1	2998989..2999765	-	258	88603962	-	Mhun_2726	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.