IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2501	 48.99	0	2858906..2859250	+	114	88603823	-	Mhun_2585	-	NADH-ubiquinone oxidoreductase, chain 4L
2502	 51.43	+1	2859254..2860822	+	522	88603824	-	Mhun_2586	-	putative monovalent cation/H+ antiporter subunit D
2503	 47.99	0	2860823..2861170	+	115	88603825	-	Mhun_2587	-	membrane bound hydrogenase, MbhI subunit
2504	 51.14	+1	2861167..2861604	+	145	88603826	-	Mhun_2588	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2505	 52.61	+1	2861601..2862233	+	210	88603827	-	Mhun_2589	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
2506	 50.16	0	2862230..2863459	+	409	88603828	-	Mhun_2590	-	NADH dehydrogenase (ubiquinone)
2507	 53.97	+1	2863456..2864487	+	343	88603829	-	Mhun_2591	-	respiratory-chain NADH dehydrogenase, subunit 1
2508	 47.16	0	2864484..2864888	+	134	88603830	-	Mhun_2592	-	NADH-plastoquinone oxidoreductase subunit
2509	 49.09	0	2864906..2866282	-	458	88603831	-	Mhun_2593	-	nicotinate phosphoribosyltransferase related
2510	 49.00	0	2866437..2867087	+	216	88603832	-	Mhun_2594	-	transglutaminase-like
2511	 45.62	0	2867096..2867575	-	159	88603833	-	Mhun_2595	-	hypothetical protein
2512	 44.21	0	2867575..2869284	-	569	88603834	-	Mhun_2596	-	putative PAS/PAC sensor protein
2513	 46.18	0	2869372..2869869	+	165	88603835	-	Mhun_2597	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2514	 51.11	+1	2869866..2870810	-	314	88603836	-	Mhun_2598	-	hypothetical protein
2515	 49.93	0	2870873..2871619	+	248	88603837	-	Mhun_2599	-	hypothetical protein
2516	 47.94	0	2871673..2872377	+	234	88603838	-	Mhun_2600	-	putative glucose-6-phosphate isomerase
2517	 48.51	0	2872362..2873099	-	245	88603839	-	Mhun_2601	-	NAD+ synthetase
2518	 50.77	0	2873143..2873859	-	238	88603840	-	Mhun_2602	-	hypothetical protein
2519	 48.90	0	2874004..2874864	+	286	88603841	-	Mhun_2603	-	protein of unknown function RIO1
2520	 50.13	0	2874858..2876798	+	646	88603842	-	Mhun_2604	-	hypothetical protein
2521	 52.03	+1	2876801..2877661	+	286	88603843	-	Mhun_2605	-	thiamine-monophosphate kinase
2522	 43.79	0	2877649..2879580	-	643	88603844	-	Mhun_2606	-	tetratricopeptide TPR_2
2523	 47.32	0	2879600..2880307	-	235	88603845	-	Mhun_2607	-	PKD
2524	 45.01	0	2880304..2880714	-	136	88603846	-	Mhun_2608	-	hypothetical protein
2525	 47.58	0	2880772..2881599	-	275	88603847	-	Mhun_2609	-	hypothetical protein
2526	 51.07	+1	2882012..2884300	+	762	88603848	-	Mhun_2610	-	phosphoenolpyruvate synthase
2527	 50.90	+1	2884290..2885399	+	369	88603849	-	Mhun_2611	-	L-tyrosine decarboxylase
2528	 47.18	0	2885380..2885928	+	182	88603850	-	Mhun_2612	-	adenine phosphoribosyltransferase
2529	 53.04	+1	2885966..2886853	+	295	88603851	-	Mhun_2613	-	diphthamide biosynthesis protein
2530	 52.55	+1	2886850..2887458	+	202	88603852	-	Mhun_2614	-	methyltransferase small
2531	 52.83	+1	2887776..2888216	-	146	88603853	-	Mhun_2615	-	hypothetical protein
2532	 50.00	0	2888248..2888829	+	193	88603854	-	Mhun_2616	-	hypothetical protein
2533	 47.09	0	2888836..2889540	-	234	88603855	-	Mhun_2617	-	hypothetical protein
2534	 51.45	+1	2889664..2890491	+	275	88603856	-	Mhun_2618	-	CBS
2535	 51.03	+1	2890464..2891627	-	387	88603857	-	Mhun_2619	-	nucleotidyl transferase
2536	 49.22	0	2891711..2892031	-	106	88603858	-	Mhun_2620	-	hypothetical protein
2537	 51.37	+1	2892076..2893245	-	389	88603859	-	Mhun_2621	-	translation-associated GTPase
2538	 52.79	+1	2893285..2893875	+	196	88603860	-	Mhun_2622	-	hypothetical protein
2539	 48.36	0	2893879..2894730	+	283	88603861	-	Mhun_2623	-	hypothetical protein
2540	 49.50	0	2894736..2895941	-	401	88603862	-	Mhun_2624	-	hypothetical protein
2541	 46.87	0	2896041..2897111	+	356	88603863	-	Mhun_2625	-	tetratricopeptide TPR_2
2542	 51.35	+1	2897203..2899800	+	865	88603864	-	Mhun_2626	-	valyl-tRNA synthetase
2543	 45.31	0	2899908..2900951	+	347	88603865	-	Mhun_2627	-	hypothetical protein
2544	 41.00	0	2900948..2901208	+	86	88603866	-	Mhun_2628	-	hypothetical protein
2545	 54.27	+1	2901217..2901837	-	206	88603867	tdk	Mhun_2629	-	thymidylate kinase
2546	 48.90	0	2901822..2902502	-	226	88603868	-	Mhun_2630	-	histidine biosynthesis
2547	 46.43	0	2902547..2903233	+	228	88603869	-	Mhun_2631	-	hypothetical protein
2548	 52.50	+1	2903235..2904695	+	486	88603870	-	Mhun_2632	-	inosine-5'-monophosphate dehydrogenase
2549	 51.53	+1	2904729..2905349	+	206	88603871	-	Mhun_2633	-	ArsR family transcriptional regulator
2550	 50.73	0	2905339..2905815	+	158	88603872	-	Mhun_2634	-	hypothetical protein
2551	 50.12	0	2905924..2907216	+	430	88603873	-	Mhun_2635	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2552	 46.32	0	2907351..2910506	+	1051	88603874	-	Mhun_2636	-	signal transduction histidine kinase
2553	 47.69	0	2910490..2911875	+	461	88603875	-	Mhun_2637	-	putative PAS/PAC sensor protein
2554	 43.59	0	2911883..2912545	-	220	88603876	-	Mhun_2638	-	response regulator receiver domain-containing protein
2555	 45.59	0	2912733..2913401	+	222	88603877	-	Mhun_2639	-	cobalamin B12-binding
2556	 45.14	0	2913373..2914566	+	397	88603878	-	Mhun_2640	-	histidine kinase
2557	 42.68	0	2914615..2915085	+	156	88603879	-	Mhun_2641	-	hypothetical protein
2558	 45.14	0	2915121..2916653	-	510	88603880	-	Mhun_2642	-	multi-sensor signal transduction histidine kinase
2559	 34.82	-2	2916770..2918380	+	536	88603881	-	Mhun_2643	-	transposase, IS4
2560	 37.32	-1	2918403..2918678	-	91	88603882	-	Mhun_2644	-	hypothetical protein
2561	 43.92	0	2918665..2919675	-	336	88603883	-	Mhun_2645	-	putative PAS/PAC sensor protein
2562	 43.31	0	2920666..2922138	+	490	88603884	-	Mhun_2646	-	RNA-directed DNA polymerase
2563	 54.12	+1	2922489..2922743	-	84	88603885	-	Mhun_2647	-	hypothetical protein
2564	 38.15	-1	2922826..2923074	+	82	88603886	-	Mhun_2648	-	hypothetical protein
2565	 38.21	-1	2923074..2923319	+	81	88603887	-	Mhun_2649	-	YcfA-like
2566	 48.46	0	2923333..2923689	-	118	88603888	-	Mhun_2650	-	hypothetical protein
2567	 48.37	0	2923689..2925743	-	684	88603889	-	Mhun_2651	-	hypothetical protein
2568	 54.30	+1	2925775..2926146	-	123	88603890	-	Mhun_2652	-	hypothetical protein
2569	 47.11	0	2926198..2927184	+	328	88603891	-	Mhun_2653	-	tetratricopeptide TPR_2
2570	 38.03	-1	2927408..2927641	+	77	88603892	-	Mhun_2654	-	hypothetical protein
2571	 35.58	-2	2927638..2927904	+	88	88603893	-	Mhun_2655	-	hypothetical protein
2572	 45.36	0	2928006..2928695	-	229	88603894	-	Mhun_2656	-	hypothetical protein
2573	 49.96	0	2929136..2930500	-	454	88603895	-	Mhun_2657	-	hypothetical protein
2574	 42.49	0	2930512..2930784	-	90	162139855	-	Mhun_2658	-	hypothetical protein
2575	 44.75	0	2930957..2933215	-	752	88603897	-	Mhun_2659	-	extracellular ligand-binding receptor
2576	 45.55	0	2933286..2933858	+	190	88603898	-	Mhun_2660	-	hypothetical protein
2577	 48.18	0	2933969..2934298	-	109	88603899	-	Mhun_2661	-	hypothetical protein
2578	 45.63	0	2934309..2934560	-	83	88603900	-	Mhun_2662	-	hypothetical protein
2579	 48.88	0	2934823..2937414	+	863	88603901	-	Mhun_2663	-	ATPase, E1-E2 type
2580	 53.70	+1	2937426..2937749	-	107	88603902	-	Mhun_2664	-	hypothetical protein
2581	 52.90	+1	2937755..2938030	-	91	88603903	-	Mhun_2665	-	hypothetical protein
2582	 47.85	0	2938147..2938938	+	263	88603904	-	Mhun_2666	-	FHA domain-containing protein
2583	 48.41	0	2938935..2940188	+	417	88603905	-	Mhun_2667	-	serine/threonine protein kinase
2584	 48.45	0	2940718..2943144	+	808	88603906	-	Mhun_2669	-	methyl-accepting chemotaxis sensory transducer
2585	 38.83	-1	2943405..2943677	-	90	88603907	-	Mhun_2670	-	hypothetical protein
2586	 45.37	0	2943844..2944707	+	287	88603908	-	Mhun_2671	-	response regulator receiver domain-containing protein
2587	 46.24	0	2944658..2946517	+	619	88603909	-	Mhun_2672	-	PAS/PAC sensor signal transduction histidine kinase
2588	 46.02	0	2946758..2947159	+	133	88603910	-	Mhun_2673	-	response regulator receiver domain-containing protein
2589	 47.41	0	2947267..2948346	-	359	88603911	-	Mhun_2674	-	hypothetical protein
2590	 39.81	-1	2948386..2948709	-	107	88603912	-	Mhun_2675	-	hypothetical protein
2591	 47.98	0	2948898..2949539	-	213	88603913	-	Mhun_2676	-	histidine kinase
2592	 47.37	0	2949630..2950256	-	208	88603914	-	Mhun_2677	-	hypothetical protein
2593	 46.02	0	2950293..2950970	-	225	88603915	-	Mhun_2678	-	putative PAS/PAC sensor protein
2594	 48.76	0	2951944..2952507	+	187	88603916	-	Mhun_2680	-	hypothetical protein
2595	 40.44	-1	2952508..2953746	-	412	88603917	-	Mhun_2681	-	secreted protein-like
2596	 44.28	0	2953974..2954585	+	203	88603918	-	Mhun_2682	-	CheC, inhibitor of MCP methylation
2597	 46.38	0	2954582..2955700	+	372	88603919	-	Mhun_2683	-	PAS/PAC sensor signal transduction histidine kinase
2598	 48.09	0	2955761..2956126	+	121	88603920	-	Mhun_2684	-	response regulator receiver domain-containing protein
2599	 45.17	0	2956123..2956722	+	199	88603921	-	Mhun_2685	-	CheC, inhibitor of MCP methylation
2600	 45.66	0	2956945..2957958	-	337	88603922	-	Mhun_2686	-	putative PAS/PAC sensor protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.