IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2468	 42.75	0	2829871..2830380	-	169	88603790	-	Mhun_2550	-	CheW protein
2469	 47.00	0	2830998..2833295	+	765	88603791	-	Mhun_2551	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
2470	 48.23	0	2833296..2834228	-	310	88603792	-	Mhun_2552	-	Allergen V5/Tpx-1 related
2471	 48.17	0	2834291..2834755	-	154	88603793	-	Mhun_2553	-	ribosomal-protein-alanine acetyltransferase
2472	 49.05	0	2834828..2836087	+	419	88603794	-	Mhun_2554	-	hypothetical protein
2473	 46.52	0	2836104..2837066	-	320	88603795	-	Mhun_2555	-	hypothetical protein
2474	 50.65	0	2837150..2838148	-	332	88603796	-	Mhun_2556	-	hypothetical protein
2475	 51.05	+1	2838284..2839237	-	317	88603797	-	Mhun_2557	-	hypothetical protein
2476	 53.92	+1	2839413..2840165	-	250	88603798	-	Mhun_2558	-	uroporphyrin-III C-methyltransferase
2477	 54.73	+1	2840158..2841045	-	295	88603799	-	Mhun_2559	-	porphobilinogen deaminase
2478	 53.35	+1	2841030..2842283	-	417	88603800	-	Mhun_2560	-	glutamate-1-semialdehyde-2,1-aminomutase
2479	 54.35	+1	2842276..2843241	-	321	88603801	-	Mhun_2561	-	delta-aminolevulinic acid dehydratase
2480	 54.12	+1	2843238..2844512	-	424	88603802	-	Mhun_2562	-	shikimate/quinate 5-dehydrogenase
2481	 51.85	+1	2844509..2845129	-	206	88603803	-	Mhun_2563	-	siroheme synthase
2482	 44.89	0	2846151..2846375	+	74	88603804	-	Mhun_2564	-	hypothetical protein
2483	 41.44	0	2847578..2847910	-	110	88603805	-	Mhun_2566	-	hypothetical protein
2484	 45.27	0	2847895..2848137	-	80	88603806	-	Mhun_2567	-	hypothetical protein
2485	 42.11	0	2848567..2849079	-	170	88603807	-	Mhun_2568	-	hypothetical protein
2486	 34.88	-2	2850240..2850497	+	85	88603808	-	Mhun_2569	-	plasmid stabilization system protein
2487	 40.74	-1	2851064..2851306	+	80	88603809	-	Mhun_2570	-	hypothetical protein
2488	 49.04	0	2851954..2852526	-	190	88603810	-	Mhun_2572	-	hypothetical protein
2489	 51.07	+1	2852655..2853122	+	155	88603811	-	Mhun_2573	-	hypothetical protein
2490	 47.99	0	2853110..2853382	+	90	88603812	-	Mhun_2574	-	hypothetical protein
2491	 51.62	+1	2853392..2854069	+	225	88603813	-	Mhun_2575	-	hypothetical protein
2492	 44.72	0	2854182..2854550	+	122	88603814	-	Mhun_2576	-	response regulator receiver domain-containing protein
2493	 47.36	0	2854554..2855159	-	201	88603815	-	Mhun_2577	-	imidazole glycerol phosphate synthase subunit HisH
2494	 50.25	0	2855156..2856556	-	466	88603816	-	Mhun_2578	-	hypothetical protein
2495	 44.89	0	2856774..2857301	+	175	88603817	-	Mhun_2579	-	cation antiporter
2496	 50.39	0	2857298..2857555	+	85	88603818	-	Mhun_2580	-	putative monovalent cation/H+ antiporter subunit F
2497	 49.58	0	2857555..2857911	+	118	88603819	-	Mhun_2581	-	putative monovalent cation/H+ antiporter subunit G
2498	 46.75	0	2857908..2858153	+	81	88603820	-	Mhun_2582	-	hypothetical protein
2499	 45.61	0	2858153..2858437	+	94	88603821	-	Mhun_2583	-	membrane bound hydrogenase, MbhE subunit
2500	 46.04	0	2858430..2858909	+	159	88603822	-	Mhun_2584	-	putative monovalent cation/H+ antiporter subunit B
2501	 48.99	0	2858906..2859250	+	114	88603823	-	Mhun_2585	-	NADH-ubiquinone oxidoreductase, chain 4L
2502	 51.43	+1	2859254..2860822	+	522	88603824	-	Mhun_2586	-	putative monovalent cation/H+ antiporter subunit D
2503	 47.99	0	2860823..2861170	+	115	88603825	-	Mhun_2587	-	membrane bound hydrogenase, MbhI subunit
2504	 51.14	+1	2861167..2861604	+	145	88603826	-	Mhun_2588	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2505	 52.61	+1	2861601..2862233	+	210	88603827	-	Mhun_2589	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
2506	 50.16	0	2862230..2863459	+	409	88603828	-	Mhun_2590	-	NADH dehydrogenase (ubiquinone)
2507	 53.97	+1	2863456..2864487	+	343	88603829	-	Mhun_2591	-	respiratory-chain NADH dehydrogenase, subunit 1
2508	 47.16	0	2864484..2864888	+	134	88603830	-	Mhun_2592	-	NADH-plastoquinone oxidoreductase subunit
2509	 49.09	0	2864906..2866282	-	458	88603831	-	Mhun_2593	-	nicotinate phosphoribosyltransferase related
2510	 49.00	0	2866437..2867087	+	216	88603832	-	Mhun_2594	-	transglutaminase-like
2511	 45.62	0	2867096..2867575	-	159	88603833	-	Mhun_2595	-	hypothetical protein
2512	 44.21	0	2867575..2869284	-	569	88603834	-	Mhun_2596	-	putative PAS/PAC sensor protein
2513	 46.18	0	2869372..2869869	+	165	88603835	-	Mhun_2597	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2514	 51.11	+1	2869866..2870810	-	314	88603836	-	Mhun_2598	-	hypothetical protein
2515	 49.93	0	2870873..2871619	+	248	88603837	-	Mhun_2599	-	hypothetical protein
2516	 47.94	0	2871673..2872377	+	234	88603838	-	Mhun_2600	-	putative glucose-6-phosphate isomerase
2517	 48.51	0	2872362..2873099	-	245	88603839	-	Mhun_2601	-	NAD+ synthetase
2518	 50.77	0	2873143..2873859	-	238	88603840	-	Mhun_2602	-	hypothetical protein
2519	 48.90	0	2874004..2874864	+	286	88603841	-	Mhun_2603	-	protein of unknown function RIO1
2520	 50.13	0	2874858..2876798	+	646	88603842	-	Mhun_2604	-	hypothetical protein
2521	 52.03	+1	2876801..2877661	+	286	88603843	-	Mhun_2605	-	thiamine-monophosphate kinase
2522	 43.79	0	2877649..2879580	-	643	88603844	-	Mhun_2606	-	tetratricopeptide TPR_2
2523	 47.32	0	2879600..2880307	-	235	88603845	-	Mhun_2607	-	PKD
2524	 45.01	0	2880304..2880714	-	136	88603846	-	Mhun_2608	-	hypothetical protein
2525	 47.58	0	2880772..2881599	-	275	88603847	-	Mhun_2609	-	hypothetical protein
2526	 51.07	+1	2882012..2884300	+	762	88603848	-	Mhun_2610	-	phosphoenolpyruvate synthase
2527	 50.90	+1	2884290..2885399	+	369	88603849	-	Mhun_2611	-	L-tyrosine decarboxylase
2528	 47.18	0	2885380..2885928	+	182	88603850	-	Mhun_2612	-	adenine phosphoribosyltransferase
2529	 53.04	+1	2885966..2886853	+	295	88603851	-	Mhun_2613	-	diphthamide biosynthesis protein
2530	 52.55	+1	2886850..2887458	+	202	88603852	-	Mhun_2614	-	methyltransferase small
2531	 52.83	+1	2887776..2888216	-	146	88603853	-	Mhun_2615	-	hypothetical protein
2532	 50.00	0	2888248..2888829	+	193	88603854	-	Mhun_2616	-	hypothetical protein
2533	 47.09	0	2888836..2889540	-	234	88603855	-	Mhun_2617	-	hypothetical protein
2534	 51.45	+1	2889664..2890491	+	275	88603856	-	Mhun_2618	-	CBS
2535	 51.03	+1	2890464..2891627	-	387	88603857	-	Mhun_2619	-	nucleotidyl transferase
2536	 49.22	0	2891711..2892031	-	106	88603858	-	Mhun_2620	-	hypothetical protein
2537	 51.37	+1	2892076..2893245	-	389	88603859	-	Mhun_2621	-	translation-associated GTPase
2538	 52.79	+1	2893285..2893875	+	196	88603860	-	Mhun_2622	-	hypothetical protein
2539	 48.36	0	2893879..2894730	+	283	88603861	-	Mhun_2623	-	hypothetical protein
2540	 49.50	0	2894736..2895941	-	401	88603862	-	Mhun_2624	-	hypothetical protein
2541	 46.87	0	2896041..2897111	+	356	88603863	-	Mhun_2625	-	tetratricopeptide TPR_2
2542	 51.35	+1	2897203..2899800	+	865	88603864	-	Mhun_2626	-	valyl-tRNA synthetase
2543	 45.31	0	2899908..2900951	+	347	88603865	-	Mhun_2627	-	hypothetical protein
2544	 41.00	0	2900948..2901208	+	86	88603866	-	Mhun_2628	-	hypothetical protein
2545	 54.27	+1	2901217..2901837	-	206	88603867	tdk	Mhun_2629	-	thymidylate kinase
2546	 48.90	0	2901822..2902502	-	226	88603868	-	Mhun_2630	-	histidine biosynthesis
2547	 46.43	0	2902547..2903233	+	228	88603869	-	Mhun_2631	-	hypothetical protein
2548	 52.50	+1	2903235..2904695	+	486	88603870	-	Mhun_2632	-	inosine-5'-monophosphate dehydrogenase
2549	 51.53	+1	2904729..2905349	+	206	88603871	-	Mhun_2633	-	ArsR family transcriptional regulator
2550	 50.73	0	2905339..2905815	+	158	88603872	-	Mhun_2634	-	hypothetical protein
2551	 50.12	0	2905924..2907216	+	430	88603873	-	Mhun_2635	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2552	 46.32	0	2907351..2910506	+	1051	88603874	-	Mhun_2636	-	signal transduction histidine kinase
2553	 47.69	0	2910490..2911875	+	461	88603875	-	Mhun_2637	-	putative PAS/PAC sensor protein
2554	 43.59	0	2911883..2912545	-	220	88603876	-	Mhun_2638	-	response regulator receiver domain-containing protein
2555	 45.59	0	2912733..2913401	+	222	88603877	-	Mhun_2639	-	cobalamin B12-binding
2556	 45.14	0	2913373..2914566	+	397	88603878	-	Mhun_2640	-	histidine kinase
2557	 42.68	0	2914615..2915085	+	156	88603879	-	Mhun_2641	-	hypothetical protein
2558	 45.14	0	2915121..2916653	-	510	88603880	-	Mhun_2642	-	multi-sensor signal transduction histidine kinase
2559	 34.82	-2	2916770..2918380	+	536	88603881	-	Mhun_2643	-	transposase, IS4
2560	 37.32	-1	2918403..2918678	-	91	88603882	-	Mhun_2644	-	hypothetical protein
2561	 43.92	0	2918665..2919675	-	336	88603883	-	Mhun_2645	-	putative PAS/PAC sensor protein
2562	 43.31	0	2920666..2922138	+	490	88603884	-	Mhun_2646	-	RNA-directed DNA polymerase
2563	 54.12	+1	2922489..2922743	-	84	88603885	-	Mhun_2647	-	hypothetical protein
2564	 38.15	-1	2922826..2923074	+	82	88603886	-	Mhun_2648	-	hypothetical protein
2565	 38.21	-1	2923074..2923319	+	81	88603887	-	Mhun_2649	-	YcfA-like
2566	 48.46	0	2923333..2923689	-	118	88603888	-	Mhun_2650	-	hypothetical protein
2567	 48.37	0	2923689..2925743	-	684	88603889	-	Mhun_2651	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.