IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2379	 52.08	+1	2734029..2734604	+	191	88603701	-	Mhun_2460	-	beta-lactamase-like
2380	 45.64	0	2734597..2735043	+	148	88603702	-	Mhun_2461	-	hypothetical protein
2381	 51.37	+1	2735131..2736150	+	339	88603703	-	Mhun_2462	-	glyceraldehyde-3-phosphate dehydrogenase
2382	 50.42	0	2736193..2737134	+	313	88603704	-	Mhun_2463	-	tyrosyl-tRNA synthetase
2383	 46.43	0	2737150..2737920	+	256	88603705	-	Mhun_2464	-	protein of unknown function RIO1
2384	 47.59	0	2737950..2738489	+	179	88603706	-	Mhun_2465	-	putative RNA-processing protein
2385	 50.79	+1	2738534..2740933	+	799	88603707	-	Mhun_2466	-	ski2-like helicase
2386	 49.35	0	2740927..2741463	+	178	88603708	-	Mhun_2467	-	hypothetical protein
2387	 44.16	0	2741466..2741696	-	76	88603709	-	Mhun_2468	-	hypothetical protein
2388	 46.42	0	2741708..2742517	-	269	88603710	-	Mhun_2469	-	histidine kinase, HAMP region
2389	 42.54	0	2742599..2743087	-	162	88603711	-	Mhun_2470	-	molybdopterin binding domain-containing protein
2390	 45.10	0	2743473..2744747	+	424	88603712	-	Mhun_2471	-	AAA ATPase, central region
2391	 48.78	0	2744767..2745258	+	163	88603713	-	Mhun_2472	-	AsnC family transcriptional regulator
2392	 52.37	+1	2745224..2746426	+	400	88603714	-	Mhun_2473	-	aminotransferase, class I and II
2393	 50.51	0	2746446..2746841	-	131	88603715	-	Mhun_2474	-	phosphoribosylaminoimidazole carboxylase
2394	 53.53	+1	2747010..2748143	+	377	88603716	-	Mhun_2475	-	Serine--glyoxylate transaminase
2395	 51.42	+1	2748140..2748598	+	152	88603717	-	Mhun_2476	-	riboflavin synthase
2396	 49.41	0	2748611..2749033	+	140	88603718	ribH	Mhun_2477	-	riboflavin synthase subunit beta
2397	 51.50	+1	2749030..2750163	+	377	88603719	-	Mhun_2478	-	aspartate aminotransferase
2398	 46.15	0	2750171..2752480	-	769	88603720	-	Mhun_2479	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2399	 48.04	0	2752732..2753826	+	364	88603721	-	Mhun_2480	-	hypothetical protein
2400	 51.48	+1	2753948..2754961	-	337	88603722	tfb	Mhun_2481	-	transcription initiation factor IIB
2401	 50.69	0	2755305..2755955	-	216	88603723	-	Mhun_2482	-	hypothetical protein
2402	 47.87	0	2755957..2756238	-	93	88603724	-	Mhun_2483	-	ribonucleoprotein complex SRP, Srp19 component
2403	 47.99	0	2756294..2756941	+	215	88603725	-	Mhun_2484	-	hydrogenase accessory protein HypB
2404	 51.85	+1	2757039..2757416	+	125	88603726	-	Mhun_2485	-	30S ribosomal protein S8e
2405	 45.97	0	2757435..2757893	-	152	88603727	-	Mhun_2486	-	hypothetical protein
2406	 45.81	0	2758077..2758541	+	154	88603728	-	Mhun_2487	-	hypothetical protein
2407	 53.68	+1	2758547..2758954	-	135	88603729	-	Mhun_2488	-	30S ribosomal protein S6e
2408	 49.92	0	2759079..2760893	-	604	88603730	-	Mhun_2489	-	translation initiation factor IF-2
2409	 41.03	0	2761328..2761600	+	90	88603731	-	Mhun_2490	-	hypothetical protein
2410	 50.00	0	2761610..2762977	-	455	88603732	-	Mhun_2491	-	beta-lactamase-like
2411	 45.05	0	2762988..2765240	-	750	88603733	-	Mhun_2492	-	hypothetical protein
2412	 45.38	0	2765393..2765857	+	154	88603734	-	Mhun_2493	-	thioredoxin
2413	 47.23	0	2765891..2767279	-	462	88603735	-	Mhun_2494	-	cell surface protein
2414	 49.35	0	2767433..2768743	+	436	88603736	-	Mhun_2495	-	PEGA
2415	 47.56	0	2768873..2770390	+	505	88603737	lysS	Mhun_2496	-	lysyl-tRNA synthetase
2416	 45.54	0	2770723..2775318	+	1531	88603738	-	Mhun_2497	-	PKD
2417	 47.07	0	2775340..2776737	+	465	88603739	-	Mhun_2498	-	PKD
2418	 50.13	0	2776813..2777937	+	374	88603740	-	Mhun_2499	-	PKD
2419	 48.47	0	2777932..2780157	-	741	88603741	-	Mhun_2500	-	(NiFe) hydrogenase maturation protein HypF
2420	 43.21	0	2780235..2780720	+	161	88603742	-	Mhun_2501	-	hypothetical protein
2421	 49.00	0	2780713..2781516	+	267	88603743	-	Mhun_2502	-	regulatory protein, Crp
2422	 48.43	0	2781513..2783618	+	701	88603744	-	Mhun_2503	-	DEAD/DEAH box helicase-like
2423	 52.51	+1	2783877..2785070	+	397	88603745	-	Mhun_2504	-	ammonium transporter
2424	 44.74	0	2785083..2785415	+	110	88603746	-	Mhun_2505	-	nitrogen regulatory protein P-II (GlnB, GlnK)
2425	 45.40	0	2785496..2786332	-	278	88603747	-	Mhun_2506	-	hypothetical protein
2426	 43.97	0	2786429..2787706	-	425	88603748	-	Mhun_2507	-	seryl-tRNA synthetase
2427	 45.90	0	2787859..2788455	-	198	88603749	-	Mhun_2508	-	30S ribosomal protein S3Ae
2428	 39.85	-1	2788526..2788786	-	86	88603750	-	Mhun_2509	-	hypothetical protein
2429	 48.33	0	2788783..2790009	-	408	88603751	-	Mhun_2510	-	phosphoesterase, RecJ-like
2430	 47.71	0	2790023..2790481	-	152	88603752	rps15p	Mhun_2511	-	30S ribosomal protein S15P
2431	 46.94	0	2790669..2791895	-	408	88603753	-	Mhun_2512	-	hypothetical protein
2432	 51.69	+1	2792585..2795128	+	847	88603754	-	Mhun_2513	-	hypothetical protein
2433	 44.14	0	2795278..2796471	+	397	88603755	-	Mhun_2514	-	aminotransferase, class I and II
2434	 35.00	-2	2796557..2797456	-	299	88603756	-	Mhun_2515	-	hypothetical protein
2435	 45.05	0	2797513..2798007	-	164	88603757	-	Mhun_2516	-	hypothetical protein
2436	 46.84	0	2798004..2798795	-	263	88603758	-	Mhun_2517	-	hypothetical protein
2437	 46.62	0	2798792..2799724	-	310	88603759	-	Mhun_2518	-	ABC transporter related
2438	 47.51	0	2799726..2800649	-	307	88603760	-	Mhun_2519	-	hypothetical protein
2439	 45.40	0	2800694..2801008	+	104	88603761	-	Mhun_2520	-	hypothetical protein
2440	 49.10	0	2801016..2802017	+	333	88603762	-	Mhun_2521	-	flap endonuclease-1
2441	 47.42	0	2802076..2804673	+	865	88603763	-	Mhun_2522	-	PKD
2442	 49.66	0	2804668..2805261	-	197	88603764	-	Mhun_2523	-	CDP-alcohol phosphatidyltransferase
2443	 47.37	0	2805258..2805770	-	170	88603765	-	Mhun_2524	-	hypothetical protein
2444	 48.00	0	2805767..2806843	-	358	88603766	-	Mhun_2525	-	histidinol-phosphate aminotransferase
2445	 53.13	+1	2806818..2807888	-	356	88603767	-	Mhun_2526	-	acetylornithine and succinylornithine aminotransferases
2446	 51.96	+1	2807977..2808894	-	305	88603768	-	Mhun_2527	-	GMP synthase subunit B
2447	 50.69	0	2808894..2810477	-	527	88603769	-	Mhun_2528	-	CTP synthetase
2448	 49.78	0	2810524..2810973	-	149	88603770	-	Mhun_2529	-	phenylacetic acid degradation-related protein
2449	 45.69	0	2811056..2811751	+	231	88603771	-	Mhun_2530	-	glycosyl transferase family protein
2450	 52.60	+1	2811776..2813104	-	442	88603772	-	Mhun_2531	-	histidinol dehydrogenase
2451	 46.52	0	2813107..2813637	-	176	88603773	-	Mhun_2532	-	CheW protein
2452	 45.39	0	2813800..2814396	+	198	88603774	-	Mhun_2533	-	CheW protein
2453	 44.01	0	2814401..2815327	-	308	88603775	-	Mhun_2534	-	hypothetical protein
2454	 48.61	0	2815389..2815964	-	191	88603776	-	Mhun_2535	-	NADPH-dependent FMN reductase
2455	 48.33	0	2816026..2816652	-	208	88603777	-	Mhun_2536	-	peptidase M50
2456	 33.77	-2	2817703..2818155	+	150	88603778	-	Mhun_2538	-	hypothetical protein
2457	 36.51	-1	2818214..2819947	+	577	88603779	-	Mhun_2539	-	transposase, IS4
2458	 44.55	0	2819992..2820303	+	103	88603780	-	Mhun_2540	-	hypothetical protein
2459	 47.40	0	2820346..2820921	-	191	88603781	-	Mhun_2541	-	hypothetical protein
2460	 48.47	0	2820914..2822743	-	609	88603782	-	Mhun_2542	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2461	 47.26	0	2822833..2823744	-	303	88603783	-	Mhun_2543	-	hypothetical protein
2462	 49.04	0	2823741..2824103	-	120	88603784	-	Mhun_2544	-	oxygen-sensitive ribonucleoside-triphosphate reductase-like
2463	 52.21	+1	2824120..2824797	-	225	88603785	-	Mhun_2545	-	orotidine 5'-phosphate decarboxylase
2464	 48.75	0	2824798..2825718	-	306	88603786	-	Mhun_2546	-	putative deoxyhypusine synthase
2465	 50.70	0	2825788..2827065	-	425	88603787	-	Mhun_2547	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2466	 48.75	0	2827193..2828113	+	306	88603788	-	Mhun_2548	-	XRE family transcriptional regulator
2467	 51.12	+1	2828167..2829825	+	552	88603789	-	Mhun_2549	-	thermosome
2468	 42.75	0	2829871..2830380	-	169	88603790	-	Mhun_2550	-	CheW protein
2469	 47.00	0	2830998..2833295	+	765	88603791	-	Mhun_2551	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
2470	 48.23	0	2833296..2834228	-	310	88603792	-	Mhun_2552	-	Allergen V5/Tpx-1 related
2471	 48.17	0	2834291..2834755	-	154	88603793	-	Mhun_2553	-	ribosomal-protein-alanine acetyltransferase
2472	 49.05	0	2834828..2836087	+	419	88603794	-	Mhun_2554	-	hypothetical protein
2473	 46.52	0	2836104..2837066	-	320	88603795	-	Mhun_2555	-	hypothetical protein
2474	 50.65	0	2837150..2838148	-	332	88603796	-	Mhun_2556	-	hypothetical protein
2475	 51.05	+1	2838284..2839237	-	317	88603797	-	Mhun_2557	-	hypothetical protein
2476	 53.92	+1	2839413..2840165	-	250	88603798	-	Mhun_2558	-	uroporphyrin-III C-methyltransferase
2477	 54.73	+1	2840158..2841045	-	295	88603799	-	Mhun_2559	-	porphobilinogen deaminase
2478	 53.35	+1	2841030..2842283	-	417	88603800	-	Mhun_2560	-	glutamate-1-semialdehyde-2,1-aminomutase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.