IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2338	 45.83	0	2666630..2666965	-	111	88603660	-	Mhun_2417	-	hypothetical protein
2339	 46.15	0	2667688..2668686	-	332	88603661	-	Mhun_2418	-	TPR repeat-containing protein
2340	 43.77	0	2668953..2669690	+	245	88603662	-	Mhun_2419	-	hypothetical protein
2341	 34.83	-2	2669833..2670099	+	88	88603663	-	Mhun_2420	-	hypothetical protein
2342	 38.18	-1	2671018..2671347	+	109	88603664	-	Mhun_2422	-	DNA polymerase, beta-like region
2343	 36.55	-1	2671344..2671685	+	113	88603665	-	Mhun_2423	-	hypothetical protein
2344	 44.32	0	2671832..2672095	-	87	88603666	-	Mhun_2424	-	TPR repeat-containing protein
2345	 45.01	0	2672362..2673192	+	276	88603667	-	Mhun_2425	-	hypothetical protein
2346	 44.65	0	2674416..2679860	-	1814	88603668	-	Mhun_2426	-	PKD
2347	 44.30	0	2679884..2686414	-	2176	88603669	-	Mhun_2427	-	PKD
2348	 39.00	-1	2686419..2687936	-	505	88603670	-	Mhun_2428	-	hypothetical protein
2349	 42.24	0	2688341..2689261	-	306	88603671	-	Mhun_2429	-	hypothetical protein
2350	 39.61	-1	2689826..2690701	-	291	88603672	-	Mhun_2430	-	hypothetical protein
2351	 44.31	0	2690748..2691002	-	84	88603673	-	Mhun_2431	-	hypothetical protein
2352	 42.56	0	2691201..2691980	-	259	88603674	-	Mhun_2432	-	hypothetical protein
2353	 51.55	+1	2692142..2694298	+	718	88603675	-	Mhun_2433	-	catalase/peroxidase HPI
2354	 47.25	0	2694928..2697456	+	842	88603676	-	Mhun_2434	-	multi-sensor signal transduction histidine kinase
2355	 51.83	+1	2697449..2701309	-	1286	88603677	-	Mhun_2435	-	DNA polymerase II large subunit
2356	 51.30	+1	2701387..2702271	-	294	88603678	-	Mhun_2436	-	heat shock protein DnaJ-like
2357	 54.62	+1	2702333..2703502	-	389	88603679	-	Mhun_2437	-	hypothetical protein
2358	 52.01	+1	2703507..2704748	-	413	88603680	-	Mhun_2438	-	carboxylyase-like protein
2359	 49.46	0	2704745..2705296	-	183	88603681	-	Mhun_2439	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2360	 50.21	0	2705685..2708813	+	1042	88603682	-	Mhun_2440	-	PKD
2361	 49.35	0	2708858..2711848	+	996	88603683	-	Mhun_2441	-	PKD
2362	 52.90	+1	2711998..2714823	+	941	88603684	-	Mhun_2442	-	PKD
2363	 50.67	0	2714831..2716030	-	399	88603685	-	Mhun_2443	-	metal dependent phosphohydrolase
2364	 52.57	+1	2716076..2716969	+	297	88603686	-	Mhun_2444	-	LPPG:FO 2-phospho-L-lactate transferase
2365	 51.56	+1	2717244..2718593	-	449	88603687	-	Mhun_2445	-	amidohydrolase
2366	 51.04	+1	2718695..2719987	+	430	88603688	aspC	Mhun_2446	-	aspartyl-tRNA synthetase
2367	 52.19	+1	2719990..2720901	+	303	88603689	-	Mhun_2447	-	methionine synthase
2368	 48.57	0	2720944..2721501	+	185	88603690	-	Mhun_2448	-	hypothetical protein
2369	 48.79	0	2721509..2721838	+	109	88603691	-	Mhun_2449	-	hypothetical protein
2370	 51.99	+1	2721795..2723348	-	517	88603692	-	Mhun_2450	-	AMP-dependent synthetase and ligase
2371	 54.62	+1	2723441..2725855	-	804	88603693	-	Mhun_2451	-	AAA family ATPase, CDC48 subfamily protein
2372	 55.30	+1	2725899..2727086	+	395	88603694	-	Mhun_2452	-	hypothetical protein
2373	 50.07	0	2727083..2727787	+	234	88603695	-	Mhun_2453	-	ATPase
2374	 49.93	0	2727835..2729238	+	467	88603696	-	Mhun_2454	-	hypothetical protein
2375	 53.77	+1	2729255..2729572	-	105	88603697	-	Mhun_2455	-	RNA recognition motif-containing protein
2376	 38.89	-1	2730843..2731094	-	83	88603698	-	Mhun_2457	-	hypothetical protein
2377	 49.52	0	2731816..2732025	+	69	88603699	-	Mhun_2458	-	transcription factor CBF/NF-Y histone
2378	 53.88	+1	2732687..2733961	-	424	88603700	-	Mhun_2459	-	thiamine biosynthesis protein ThiC
2379	 52.08	+1	2734029..2734604	+	191	88603701	-	Mhun_2460	-	beta-lactamase-like
2380	 45.64	0	2734597..2735043	+	148	88603702	-	Mhun_2461	-	hypothetical protein
2381	 51.37	+1	2735131..2736150	+	339	88603703	-	Mhun_2462	-	glyceraldehyde-3-phosphate dehydrogenase
2382	 50.42	0	2736193..2737134	+	313	88603704	-	Mhun_2463	-	tyrosyl-tRNA synthetase
2383	 46.43	0	2737150..2737920	+	256	88603705	-	Mhun_2464	-	protein of unknown function RIO1
2384	 47.59	0	2737950..2738489	+	179	88603706	-	Mhun_2465	-	putative RNA-processing protein
2385	 50.79	+1	2738534..2740933	+	799	88603707	-	Mhun_2466	-	ski2-like helicase
2386	 49.35	0	2740927..2741463	+	178	88603708	-	Mhun_2467	-	hypothetical protein
2387	 44.16	0	2741466..2741696	-	76	88603709	-	Mhun_2468	-	hypothetical protein
2388	 46.42	0	2741708..2742517	-	269	88603710	-	Mhun_2469	-	histidine kinase, HAMP region
2389	 42.54	0	2742599..2743087	-	162	88603711	-	Mhun_2470	-	molybdopterin binding domain-containing protein
2390	 45.10	0	2743473..2744747	+	424	88603712	-	Mhun_2471	-	AAA ATPase, central region
2391	 48.78	0	2744767..2745258	+	163	88603713	-	Mhun_2472	-	AsnC family transcriptional regulator
2392	 52.37	+1	2745224..2746426	+	400	88603714	-	Mhun_2473	-	aminotransferase, class I and II
2393	 50.51	0	2746446..2746841	-	131	88603715	-	Mhun_2474	-	phosphoribosylaminoimidazole carboxylase
2394	 53.53	+1	2747010..2748143	+	377	88603716	-	Mhun_2475	-	Serine--glyoxylate transaminase
2395	 51.42	+1	2748140..2748598	+	152	88603717	-	Mhun_2476	-	riboflavin synthase
2396	 49.41	0	2748611..2749033	+	140	88603718	ribH	Mhun_2477	-	riboflavin synthase subunit beta
2397	 51.50	+1	2749030..2750163	+	377	88603719	-	Mhun_2478	-	aspartate aminotransferase
2398	 46.15	0	2750171..2752480	-	769	88603720	-	Mhun_2479	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2399	 48.04	0	2752732..2753826	+	364	88603721	-	Mhun_2480	-	hypothetical protein
2400	 51.48	+1	2753948..2754961	-	337	88603722	tfb	Mhun_2481	-	transcription initiation factor IIB
2401	 50.69	0	2755305..2755955	-	216	88603723	-	Mhun_2482	-	hypothetical protein
2402	 47.87	0	2755957..2756238	-	93	88603724	-	Mhun_2483	-	ribonucleoprotein complex SRP, Srp19 component
2403	 47.99	0	2756294..2756941	+	215	88603725	-	Mhun_2484	-	hydrogenase accessory protein HypB
2404	 51.85	+1	2757039..2757416	+	125	88603726	-	Mhun_2485	-	30S ribosomal protein S8e
2405	 45.97	0	2757435..2757893	-	152	88603727	-	Mhun_2486	-	hypothetical protein
2406	 45.81	0	2758077..2758541	+	154	88603728	-	Mhun_2487	-	hypothetical protein
2407	 53.68	+1	2758547..2758954	-	135	88603729	-	Mhun_2488	-	30S ribosomal protein S6e
2408	 49.92	0	2759079..2760893	-	604	88603730	-	Mhun_2489	-	translation initiation factor IF-2
2409	 41.03	0	2761328..2761600	+	90	88603731	-	Mhun_2490	-	hypothetical protein
2410	 50.00	0	2761610..2762977	-	455	88603732	-	Mhun_2491	-	beta-lactamase-like
2411	 45.05	0	2762988..2765240	-	750	88603733	-	Mhun_2492	-	hypothetical protein
2412	 45.38	0	2765393..2765857	+	154	88603734	-	Mhun_2493	-	thioredoxin
2413	 47.23	0	2765891..2767279	-	462	88603735	-	Mhun_2494	-	cell surface protein
2414	 49.35	0	2767433..2768743	+	436	88603736	-	Mhun_2495	-	PEGA
2415	 47.56	0	2768873..2770390	+	505	88603737	lysS	Mhun_2496	-	lysyl-tRNA synthetase
2416	 45.54	0	2770723..2775318	+	1531	88603738	-	Mhun_2497	-	PKD
2417	 47.07	0	2775340..2776737	+	465	88603739	-	Mhun_2498	-	PKD
2418	 50.13	0	2776813..2777937	+	374	88603740	-	Mhun_2499	-	PKD
2419	 48.47	0	2777932..2780157	-	741	88603741	-	Mhun_2500	-	(NiFe) hydrogenase maturation protein HypF
2420	 43.21	0	2780235..2780720	+	161	88603742	-	Mhun_2501	-	hypothetical protein
2421	 49.00	0	2780713..2781516	+	267	88603743	-	Mhun_2502	-	regulatory protein, Crp
2422	 48.43	0	2781513..2783618	+	701	88603744	-	Mhun_2503	-	DEAD/DEAH box helicase-like
2423	 52.51	+1	2783877..2785070	+	397	88603745	-	Mhun_2504	-	ammonium transporter
2424	 44.74	0	2785083..2785415	+	110	88603746	-	Mhun_2505	-	nitrogen regulatory protein P-II (GlnB, GlnK)
2425	 45.40	0	2785496..2786332	-	278	88603747	-	Mhun_2506	-	hypothetical protein
2426	 43.97	0	2786429..2787706	-	425	88603748	-	Mhun_2507	-	seryl-tRNA synthetase
2427	 45.90	0	2787859..2788455	-	198	88603749	-	Mhun_2508	-	30S ribosomal protein S3Ae
2428	 39.85	-1	2788526..2788786	-	86	88603750	-	Mhun_2509	-	hypothetical protein
2429	 48.33	0	2788783..2790009	-	408	88603751	-	Mhun_2510	-	phosphoesterase, RecJ-like
2430	 47.71	0	2790023..2790481	-	152	88603752	rps15p	Mhun_2511	-	30S ribosomal protein S15P
2431	 46.94	0	2790669..2791895	-	408	88603753	-	Mhun_2512	-	hypothetical protein
2432	 51.69	+1	2792585..2795128	+	847	88603754	-	Mhun_2513	-	hypothetical protein
2433	 44.14	0	2795278..2796471	+	397	88603755	-	Mhun_2514	-	aminotransferase, class I and II
2434	 35.00	-2	2796557..2797456	-	299	88603756	-	Mhun_2515	-	hypothetical protein
2435	 45.05	0	2797513..2798007	-	164	88603757	-	Mhun_2516	-	hypothetical protein
2436	 46.84	0	2798004..2798795	-	263	88603758	-	Mhun_2517	-	hypothetical protein
2437	 46.62	0	2798792..2799724	-	310	88603759	-	Mhun_2518	-	ABC transporter related
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.