IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2025	 47.33	0	2374700..2375299	+	199	88603347	-	Mhun_2099	-	uncharacterized membrane protein
2026	 50.53	0	2375292..2375948	+	218	88603348	-	Mhun_2100	-	NADH dehydrogenase I, subunit N related protein
2027	 50.30	0	2376156..2376998	+	280	88603349	-	Mhun_2101	-	respiratory-chain NADH dehydrogenase, subunit 1
2028	 49.19	0	2376995..2377240	+	81	88603350	-	Mhun_2102	-	hypothetical protein
2029	 45.24	0	2377237..2377614	+	125	88603351	-	Mhun_2103	-	hypothetical protein
2030	 53.20	+1	2377611..2378063	+	150	88603352	-	Mhun_2104	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2031	 51.84	+1	2378060..2379145	+	361	88603353	-	Mhun_2105	-	NADH-ubiquinone oxidoreductase, chain 49kDa
2032	 53.59	+1	2379149..2379760	+	203	88603354	-	Mhun_2106	-	4Fe-4S ferredoxin, iron-sulfur binding
2033	 52.56	+1	2379757..2380146	+	129	88603355	-	Mhun_2107	-	molydopterin dinucleotide-binding region
2034	 49.96	0	2380136..2381440	+	434	88603356	-	Mhun_2108	-	formylmethanofuran dehydrogenase, subunit B
2035	 52.83	+1	2381433..2383130	+	565	88603357	-	Mhun_2109	-	amidohydrolase 3
2036	 33.33	-2	2383182..2383493	+	103	88603358	-	Mhun_2110	-	hypothetical protein
2037	 37.92	-1	2383483..2383896	+	137	88603359	-	Mhun_2111	-	hypothetical protein
2038	 51.63	+1	2383899..2384663	+	254	88603360	-	Mhun_2112	-	formylmethanofuran dehydrogenase
2039	 44.37	0	2384738..2386024	+	428	88603361	-	Mhun_2113	-	UDP-glucose 6-dehydrogenase
2040	 43.53	0	2386026..2386898	+	290	88603362	-	Mhun_2114	-	UTP-glucose-1-phosphate uridylyltransferase
2041	 39.81	-1	2387002..2389086	+	694	88603363	-	Mhun_2115	-	hypothetical protein
2042	 39.78	-1	2389100..2389456	-	118	88603364	-	Mhun_2116	-	putative small multidrug resistance transmembrane protein
2043	 42.19	0	2389465..2390379	-	304	88603365	-	Mhun_2117	-	glycosyl transferase family protein
2044	 43.42	0	2390609..2391619	+	336	88603366	-	Mhun_2118	-	NAD-dependent epimerase/dehydratase
2045	 41.05	0	2391801..2392124	-	107	88603367	-	Mhun_2119	-	hypothetical protein
2046	 34.69	-2	2392238..2392384	+	48	88603368	-	Mhun_2120	-	hypothetical protein
2047	 40.81	0	2392980..2394758	+	592	88603369	-	Mhun_2121	-	ABC transporter related
2048	 32.28	-2	2395543..2396772	+	409	88603370	-	Mhun_2122	-	NDP-hexose 3-C-methyltransferase TylCIII
2049	 25.26	-2	2396899..2398161	+	420	88603371	-	Mhun_2123	-	hypothetical protein
2050	 28.37	-2	2398151..2399743	+	530	88603372	-	Mhun_2124	-	glycosyl transferase, group 1
2051	 31.44	-2	2399740..2400372	+	210	88603373	-	Mhun_2125	-	hexapaptide repeat-containing transferase
2052	 32.35	-2	2400498..2401616	+	372	88603374	-	Mhun_2126	-	DegT/DnrJ/EryC1/StrS aminotransferase
2053	 25.33	-2	2401733..2402332	+	199	88603375	-	Mhun_2127	-	hypothetical protein
2054	 29.50	-2	2402641..2403789	+	382	88603376	-	Mhun_2128	-	hypothetical protein
2055	 33.24	-2	2403888..2404988	+	366	88603377	-	Mhun_2129	-	glycosyl transferase, group 1
2056	 31.09	-2	2405171..2406283	+	370	88603378	-	Mhun_2130	-	glycosyl transferase, group 1
2057	 34.39	-2	2406320..2406982	-	220	88603379	-	Mhun_2131	-	hypothetical protein
2058	 47.76	0	2407106..2408152	+	348	88603380	-	Mhun_2132	-	GDP-mannose 4,6-dehydratase
2059	 30.21	-2	2408346..2410172	+	608	88603381	-	Mhun_2133	-	hypothetical protein
2060	 43.04	0	2411009..2412481	+	490	88603382	-	Mhun_2134	-	RNA-directed DNA polymerase
2061	 43.74	0	2414152..2415093	-	313	88603383	-	Mhun_2136	-	NAD-dependent epimerase/dehydratase
2062	 37.00	-1	2415177..2415476	+	99	88603384	-	Mhun_2137	-	hypothetical protein
2063	 36.17	-1	2415561..2416547	+	328	88603385	-	Mhun_2138	-	transposase, IS4
2064	 38.10	-1	2416641..2416976	+	111	88603386	-	Mhun_2139	-	hypothetical protein
2065	 47.94	0	2417001..2418431	-	476	88603387	-	Mhun_2140	-	UDP-glucose/GDP-mannose dehydrogenase
2066	 43.79	0	2418421..2419338	-	305	88603388	-	Mhun_2141	-	oxidoreductase-like
2067	 46.56	0	2419338..2420426	-	362	88603389	-	Mhun_2142	-	DegT/DnrJ/EryC1/StrS aminotransferase
2068	 46.06	0	2420423..2421019	-	198	88603390	-	Mhun_2143	-	hexapaptide repeat-containing transferase
2069	 52.29	+1	2421502..2422809	+	435	88603391	-	Mhun_2144	-	methyl-coenzyme M reductase, beta subunit
2070	 50.96	+1	2422828..2423298	+	156	88603392	-	Mhun_2145	-	methyl-coenzyme M reductase, protein D
2071	 51.42	+1	2423298..2423933	+	211	88603393	-	Mhun_2146	-	methyl-coenzyme M reductase operon protein C
2072	 53.36	+1	2423938..2424696	+	252	88603394	-	Mhun_2147	-	methyl-coenzyme M reductase, gamma subunit
2073	 52.99	+1	2424710..2426413	+	567	88603395	-	Mhun_2148	-	coenzyme-B sulfoethylthiotransferase
2074	 38.69	-1	2426491..2426901	-	136	88603396	-	Mhun_2149	-	PilT protein-like
2075	 30.86	-2	2426898..2427140	-	80	88603397	-	Mhun_2150	-	hypothetical protein
2076	 40.61	-1	2427753..2428178	+	141	88603398	-	Mhun_2151	-	PilT protein-like
2077	 44.30	0	2429181..2429627	+	148	88603399	-	Mhun_2153	-	metal-binding protein-like
2078	 37.35	-1	2430230..2430478	+	82	88603400	-	Mhun_2154	-	hypothetical protein
2079	 35.02	-2	2430469..2430882	+	137	88603401	-	Mhun_2155	-	hypothetical protein
2080	 46.60	0	2430913..2431854	+	313	88603402	-	Mhun_2156	-	radical SAM family protein
2081	 47.73	0	2431903..2433618	-	571	88603403	-	Mhun_2157	-	small GTP-binding protein domain-containing protein
2082	 47.01	0	2433615..2433848	-	77	88603404	-	Mhun_2158	-	hypothetical protein
2083	 46.61	0	2434111..2434464	-	117	88603405	-	Mhun_2159	-	dinitrogenase iron-molybdenum cofactor biosynthesis
2084	 52.59	+1	2434468..2434737	-	89	88603406	-	Mhun_2160	-	hypothetical protein
2085	 49.44	0	2434771..2435130	-	119	88603407	-	Mhun_2161	-	HTH DNA-binding protein
2086	 51.38	+1	2435193..2436062	-	289	88603408	-	Mhun_2162	-	cobyrinic acid a,c-diamide synthase
2087	 47.89	0	2436059..2436910	-	283	88603409	-	Mhun_2163	-	cobyrinic acid a,c-diamide synthase
2088	 46.85	0	2436936..2437268	-	110	88603410	-	Mhun_2164	-	dinitrogenase iron-molybdenum cofactor biosynthesis
2089	 48.27	0	2437407..2438216	-	269	88603411	-	Mhun_2165	-	ATP-binding protein
2090	 46.46	0	2438250..2438729	-	159	88603412	-	Mhun_2166	-	hypothetical protein
2091	 50.41	0	2438899..2440233	+	444	88603413	-	Mhun_2167	-	radical SAM family protein
2092	 51.39	+1	2440650..2441546	+	298	88603414	-	Mhun_2168	-	tetrahydromethanopterin S-methyltransferase subunit E
2093	 52.19	+1	2441543..2442385	+	280	88603415	-	Mhun_2169	-	tetrahydromethanopterin S-methyltransferase subunit D
2094	 48.44	0	2442396..2443295	+	299	88603416	-	Mhun_2170	-	tetrahydromethanopterin S-methyltransferase subunit C
2095	 50.88	+1	2443295..2443579	+	94	88603417	-	Mhun_2171	-	tetrahydromethanopterin S-methyltransferase subunit B
2096	 50.48	0	2443590..2444324	+	244	88603418	-	Mhun_2172	-	tetrahydromethanopterin S-methyltransferase subunit A
2097	 47.95	0	2444358..2444528	+	56	88603419	mtrF	Mhun_2173	-	tetrahydromethanopterin S-methyltransferase subunit F
2098	 51.54	+1	2444528..2445274	+	248	88603420	-	Mhun_2174	-	tetrahydromethanopterin S-methyltransferase subunit A
2099	 51.72	+1	2445294..2446310	+	338	88603421	-	Mhun_2175	-	tetrahydromethanopterin S-methyltransferase subunit H
2100	 46.54	0	2446648..2447919	-	423	88603422	-	Mhun_2176	-	cysteinyl-tRNA synthetase
2101	 41.23	0	2448795..2449427	-	210	88603423	-	Mhun_2177	-	hypothetical protein
2102	 44.44	0	2449496..2449801	-	101	88603424	-	Mhun_2178	-	hypothetical protein
2103	 45.15	0	2450143..2450379	-	78	88603425	-	Mhun_2179	-	hypothetical protein
2104	 47.26	0	2450693..2452063	+	456	88603426	-	Mhun_2180	-	Sep-tRNA:Cys-tRNA synthetase
2105	 47.69	0	2452069..2453364	+	431	88603427	-	Mhun_2181	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2106	 49.42	0	2453483..2454433	+	316	88603428	-	Mhun_2182	-	cysteine synthase A
2107	 46.75	0	2454476..2455213	-	245	88603429	-	Mhun_2183	-	UBA/THIF-type NAD/FAD binding fold
2108	 46.85	0	2455564..2456673	+	369	88603430	-	Mhun_2184	-	thiamine biosynthesis protein
2109	 45.26	0	2456698..2457510	+	270	88603431	-	Mhun_2185	-	hypothetical protein
2110	 44.03	0	2458390..2458548	-	52	88603432	-	Mhun_2186	-	rubredoxin-type Fe(Cys)4 protein
2111	 45.39	0	2458554..2458835	-	93	88603433	-	Mhun_2187	-	hypothetical protein
2112	 48.03	0	2458832..2459212	-	126	88603434	-	Mhun_2188	-	cupin 2, barrel
2113	 51.58	+1	2459345..2460961	-	538	88603435	-	Mhun_2189	-	hydroxylamine reductase
2114	 43.89	0	2461047..2461406	+	119	88603436	-	Mhun_2190	-	putative transcriptional regulator
2115	 41.06	0	2461449..2461694	+	81	88603437	-	Mhun_2191	-	hypothetical protein
2116	 48.44	0	2461878..2462711	+	277	88603438	-	Mhun_2192	-	4Fe-4S ferredoxin, iron-sulfur binding
2117	 47.43	0	2462959..2463717	+	252	88603439	-	Mhun_2193	-	hypothetical protein
2118	 43.28	0	2463855..2464226	+	123	88603440	-	Mhun_2194	-	hypothetical protein
2119	 48.80	0	2464223..2465392	+	389	88603441	-	Mhun_2195	-	hypothetical protein
2120	 50.22	0	2465389..2466081	+	230	88603442	-	Mhun_2196	-	ABC transporter related
2121	 47.73	0	2466157..2467149	-	330	88603443	-	Mhun_2197	-	radical SAM family protein
2122	 37.56	-1	2467314..2467763	-	149	88603444	-	Mhun_2198	-	hypothetical protein
2123	 41.52	0	2467914..2468414	-	166	88603445	-	Mhun_2199	-	hypothetical protein
2124	 43.04	0	2468919..2469608	+	229	88603446	-	Mhun_2200	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.