IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1986	 43.71	0	2326519..2326836	+	105	88603308	-	Mhun_2059	-	excisionase/Xis, DNA-binding
1987	 50.86	+1	2326973..2329927	-	984	88603309	-	Mhun_2060	-	tetratricopeptide TPR_2
1988	 50.56	0	2330191..2336232	-	2013	88603310	-	Mhun_2061	-	putative DNA helicase
1989	 46.57	0	2336567..2337397	+	276	88603311	-	Mhun_2062	-	hypothetical protein
1990	 42.10	0	2337460..2338098	+	212	88603312	-	Mhun_2063	-	hypothetical protein
1991	 42.67	0	2338079..2338378	-	99	88603313	-	Mhun_2064	-	hypothetical protein
1992	 50.72	0	2338407..2339861	-	484	88603314	-	Mhun_2065	-	FAD dependent oxidoreductase
1993	 49.46	0	2340319..2341062	-	247	88603315	-	Mhun_2067	-	4Fe-4S ferredoxin, iron-sulfur binding
1994	 49.90	0	2341099..2341593	-	164	88603316	-	Mhun_2068	-	hypothetical protein
1995	 48.55	0	2341772..2343874	+	700	88603317	-	Mhun_2069	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1996	 47.03	0	2343895..2345106	-	403	88603318	-	Mhun_2070	-	hypothetical protein
1997	 43.09	0	2345145..2346005	-	286	88603319	-	Mhun_2071	-	hypothetical protein
1998	 48.10	0	2346034..2347740	-	568	88603320	-	Mhun_2072	-	TrkA-N
1999	 44.78	0	2347818..2348612	+	264	88603321	-	Mhun_2073	-	hypothetical protein
2000	 45.27	0	2348624..2350516	-	630	88603322	-	Mhun_2074	-	clostripain
2001	 47.58	0	2350578..2351918	+	446	88603323	-	Mhun_2075	-	ThiJ/PfpI
2002	 46.37	0	2351919..2353790	-	623	88603324	-	Mhun_2076	-	hypothetical protein
2003	 49.74	0	2353847..2354791	-	314	88603325	-	Mhun_2077	-	tetratricopeptide TPR_2
2004	 47.67	0	2354849..2356264	-	471	88603326	-	Mhun_2078	-	TPR repeat-containing protein
2005	 52.07	+1	2356488..2357720	+	410	88603327	-	Mhun_2079	-	nuclease SbcCD, D subunit
2006	 46.91	0	2357725..2361384	+	1219	88603328	-	Mhun_2080	-	exonuclease SbcC
2007	 49.58	0	2361426..2361782	+	118	88603329	-	Mhun_2081	-	hypothetical protein
2008	 48.00	0	2362051..2362500	+	149	88603330	-	Mhun_2082	-	formylmethanofuran dehydrogenase subunit E-like
2009	 51.75	+1	2362497..2363240	+	247	88603331	-	Mhun_2083	-	ABC transporter related
2010	 50.18	0	2363240..2364070	+	276	88603332	-	Mhun_2084	-	hypothetical protein
2011	 49.32	0	2364096..2364977	+	293	88603333	-	Mhun_2085	-	periplasmic solute binding protein
2012	 50.24	0	2365202..2366035	-	277	88603334	-	Mhun_2086	-	hypothetical protein
2013	 50.06	0	2366032..2366808	-	258	88603335	-	Mhun_2087	-	ABC transporter related
2014	 49.07	0	2366805..2367776	-	323	88603336	-	Mhun_2088	-	periplasmic solute binding protein
2015	 47.18	0	2367779..2368204	-	141	88603337	-	Mhun_2089	-	iron dependent repressor
2016	 48.23	0	2368286..2369218	-	310	88603338	-	Mhun_2090	-	hypothetical protein
2017	 44.54	0	2369215..2369910	-	231	88603339	-	Mhun_2091	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2018	 44.73	0	2370008..2371894	+	628	88603340	-	Mhun_2092	-	putative PAS/PAC sensor protein
2019	 49.75	0	2372049..2372834	+	261	88603341	-	Mhun_2093	-	hypothetical protein
2020	 51.23	+1	2372974..2373459	+	161	88603342	-	Mhun_2094	-	hypothetical protein
2021	 50.46	0	2373456..2373782	+	108	88603343	-	Mhun_2095	-	membrane protein-like
2022	 48.25	0	2373779..2374006	+	75	88603344	-	Mhun_2096	-	hypothetical protein
2023	 45.99	0	2374003..2374239	+	78	88603345	-	Mhun_2097	-	hypothetical protein
2024	 46.37	0	2374236..2374703	+	155	88603346	-	Mhun_2098	-	hypothetical protein
2025	 47.33	0	2374700..2375299	+	199	88603347	-	Mhun_2099	-	uncharacterized membrane protein
2026	 50.53	0	2375292..2375948	+	218	88603348	-	Mhun_2100	-	NADH dehydrogenase I, subunit N related protein
2027	 50.30	0	2376156..2376998	+	280	88603349	-	Mhun_2101	-	respiratory-chain NADH dehydrogenase, subunit 1
2028	 49.19	0	2376995..2377240	+	81	88603350	-	Mhun_2102	-	hypothetical protein
2029	 45.24	0	2377237..2377614	+	125	88603351	-	Mhun_2103	-	hypothetical protein
2030	 53.20	+1	2377611..2378063	+	150	88603352	-	Mhun_2104	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2031	 51.84	+1	2378060..2379145	+	361	88603353	-	Mhun_2105	-	NADH-ubiquinone oxidoreductase, chain 49kDa
2032	 53.59	+1	2379149..2379760	+	203	88603354	-	Mhun_2106	-	4Fe-4S ferredoxin, iron-sulfur binding
2033	 52.56	+1	2379757..2380146	+	129	88603355	-	Mhun_2107	-	molydopterin dinucleotide-binding region
2034	 49.96	0	2380136..2381440	+	434	88603356	-	Mhun_2108	-	formylmethanofuran dehydrogenase, subunit B
2035	 52.83	+1	2381433..2383130	+	565	88603357	-	Mhun_2109	-	amidohydrolase 3
2036	 33.33	-2	2383182..2383493	+	103	88603358	-	Mhun_2110	-	hypothetical protein
2037	 37.92	-1	2383483..2383896	+	137	88603359	-	Mhun_2111	-	hypothetical protein
2038	 51.63	+1	2383899..2384663	+	254	88603360	-	Mhun_2112	-	formylmethanofuran dehydrogenase
2039	 44.37	0	2384738..2386024	+	428	88603361	-	Mhun_2113	-	UDP-glucose 6-dehydrogenase
2040	 43.53	0	2386026..2386898	+	290	88603362	-	Mhun_2114	-	UTP-glucose-1-phosphate uridylyltransferase
2041	 39.81	-1	2387002..2389086	+	694	88603363	-	Mhun_2115	-	hypothetical protein
2042	 39.78	-1	2389100..2389456	-	118	88603364	-	Mhun_2116	-	putative small multidrug resistance transmembrane protein
2043	 42.19	0	2389465..2390379	-	304	88603365	-	Mhun_2117	-	glycosyl transferase family protein
2044	 43.42	0	2390609..2391619	+	336	88603366	-	Mhun_2118	-	NAD-dependent epimerase/dehydratase
2045	 41.05	0	2391801..2392124	-	107	88603367	-	Mhun_2119	-	hypothetical protein
2046	 34.69	-2	2392238..2392384	+	48	88603368	-	Mhun_2120	-	hypothetical protein
2047	 40.81	0	2392980..2394758	+	592	88603369	-	Mhun_2121	-	ABC transporter related
2048	 32.28	-2	2395543..2396772	+	409	88603370	-	Mhun_2122	-	NDP-hexose 3-C-methyltransferase TylCIII
2049	 25.26	-2	2396899..2398161	+	420	88603371	-	Mhun_2123	-	hypothetical protein
2050	 28.37	-2	2398151..2399743	+	530	88603372	-	Mhun_2124	-	glycosyl transferase, group 1
2051	 31.44	-2	2399740..2400372	+	210	88603373	-	Mhun_2125	-	hexapaptide repeat-containing transferase
2052	 32.35	-2	2400498..2401616	+	372	88603374	-	Mhun_2126	-	DegT/DnrJ/EryC1/StrS aminotransferase
2053	 25.33	-2	2401733..2402332	+	199	88603375	-	Mhun_2127	-	hypothetical protein
2054	 29.50	-2	2402641..2403789	+	382	88603376	-	Mhun_2128	-	hypothetical protein
2055	 33.24	-2	2403888..2404988	+	366	88603377	-	Mhun_2129	-	glycosyl transferase, group 1
2056	 31.09	-2	2405171..2406283	+	370	88603378	-	Mhun_2130	-	glycosyl transferase, group 1
2057	 34.39	-2	2406320..2406982	-	220	88603379	-	Mhun_2131	-	hypothetical protein
2058	 47.76	0	2407106..2408152	+	348	88603380	-	Mhun_2132	-	GDP-mannose 4,6-dehydratase
2059	 30.21	-2	2408346..2410172	+	608	88603381	-	Mhun_2133	-	hypothetical protein
2060	 43.04	0	2411009..2412481	+	490	88603382	-	Mhun_2134	-	RNA-directed DNA polymerase
2061	 43.74	0	2414152..2415093	-	313	88603383	-	Mhun_2136	-	NAD-dependent epimerase/dehydratase
2062	 37.00	-1	2415177..2415476	+	99	88603384	-	Mhun_2137	-	hypothetical protein
2063	 36.17	-1	2415561..2416547	+	328	88603385	-	Mhun_2138	-	transposase, IS4
2064	 38.10	-1	2416641..2416976	+	111	88603386	-	Mhun_2139	-	hypothetical protein
2065	 47.94	0	2417001..2418431	-	476	88603387	-	Mhun_2140	-	UDP-glucose/GDP-mannose dehydrogenase
2066	 43.79	0	2418421..2419338	-	305	88603388	-	Mhun_2141	-	oxidoreductase-like
2067	 46.56	0	2419338..2420426	-	362	88603389	-	Mhun_2142	-	DegT/DnrJ/EryC1/StrS aminotransferase
2068	 46.06	0	2420423..2421019	-	198	88603390	-	Mhun_2143	-	hexapaptide repeat-containing transferase
2069	 52.29	+1	2421502..2422809	+	435	88603391	-	Mhun_2144	-	methyl-coenzyme M reductase, beta subunit
2070	 50.96	+1	2422828..2423298	+	156	88603392	-	Mhun_2145	-	methyl-coenzyme M reductase, protein D
2071	 51.42	+1	2423298..2423933	+	211	88603393	-	Mhun_2146	-	methyl-coenzyme M reductase operon protein C
2072	 53.36	+1	2423938..2424696	+	252	88603394	-	Mhun_2147	-	methyl-coenzyme M reductase, gamma subunit
2073	 52.99	+1	2424710..2426413	+	567	88603395	-	Mhun_2148	-	coenzyme-B sulfoethylthiotransferase
2074	 38.69	-1	2426491..2426901	-	136	88603396	-	Mhun_2149	-	PilT protein-like
2075	 30.86	-2	2426898..2427140	-	80	88603397	-	Mhun_2150	-	hypothetical protein
2076	 40.61	-1	2427753..2428178	+	141	88603398	-	Mhun_2151	-	PilT protein-like
2077	 44.30	0	2429181..2429627	+	148	88603399	-	Mhun_2153	-	metal-binding protein-like
2078	 37.35	-1	2430230..2430478	+	82	88603400	-	Mhun_2154	-	hypothetical protein
2079	 35.02	-2	2430469..2430882	+	137	88603401	-	Mhun_2155	-	hypothetical protein
2080	 46.60	0	2430913..2431854	+	313	88603402	-	Mhun_2156	-	radical SAM family protein
2081	 47.73	0	2431903..2433618	-	571	88603403	-	Mhun_2157	-	small GTP-binding protein domain-containing protein
2082	 47.01	0	2433615..2433848	-	77	88603404	-	Mhun_2158	-	hypothetical protein
2083	 46.61	0	2434111..2434464	-	117	88603405	-	Mhun_2159	-	dinitrogenase iron-molybdenum cofactor biosynthesis
2084	 52.59	+1	2434468..2434737	-	89	88603406	-	Mhun_2160	-	hypothetical protein
2085	 49.44	0	2434771..2435130	-	119	88603407	-	Mhun_2161	-	HTH DNA-binding protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.