IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1908	 46.34	0	2233384..2234175	+	263	88603230	-	Mhun_1979	-	NifC-like ABC-type porter
1909	 44.29	0	2234175..2235242	+	355	88603231	-	Mhun_1980	-	ABC transporter related
1910	 50.55	0	2235254..2236252	-	332	88603232	-	Mhun_1981	-	formylmethanofuran dehydrogenase
1911	 48.79	0	2236266..2237966	-	566	88603233	-	Mhun_1982	-	amidohydrolase 3
1912	 50.61	0	2237980..2239299	-	439	88603234	-	Mhun_1983	-	molybdopterin oxidoreductase
1913	 47.26	0	2239299..2239700	-	133	88603235	-	Mhun_1984	-	molydopterin dinucleotide-binding region
1914	 43.19	0	2240705..2241343	+	212	88603236	-	Mhun_1985	-	formylmethanofuran dehydrogenase, subunit E region
1915	 40.16	-1	2241448..2242971	-	507	88603237	-	Mhun_1986	-	hypothetical protein
1916	 48.31	0	2243424..2243837	+	137	88603238	-	Mhun_1987	-	molydopterin dinucleotide-binding region
1917	 47.30	0	2243837..2245168	+	443	88603239	-	Mhun_1988	-	formylmethanofuran dehydrogenase subunit B
1918	 46.10	0	2245168..2246883	+	571	88603240	-	Mhun_1989	-	amidohydrolase 3
1919	 45.44	0	2246898..2247698	+	266	88603241	-	Mhun_1990	-	formylmethanofuran dehydrogenase
1920	 44.57	0	2247809..2248831	+	340	88603242	-	Mhun_1991	-	hypothetical protein
1921	 42.12	0	2248850..2249122	+	90	88603243	-	Mhun_1992	-	hypothetical protein
1922	 40.74	-1	2249166..2249570	+	134	88603244	-	Mhun_1993	-	molydopterin dinucleotide-binding region
1923	 43.30	0	2249576..2250979	+	467	88603245	-	Mhun_1994	-	molybdopterin oxidoreductase
1924	 46.81	0	2251289..2252371	+	360	88603246	-	Mhun_1995	-	periplasmic binding protein
1925	 44.34	0	2252378..2253022	+	214	88603247	-	Mhun_1996	-	generic methyltransferase
1926	 45.28	0	2253019..2254776	+	585	88603248	-	Mhun_1997	-	radical SAM family protein
1927	 39.44	-1	2254840..2255265	+	141	88603249	-	Mhun_1998	-	hypothetical protein
1928	 43.46	0	2255375..2256421	+	348	88603250	-	Mhun_1999	-	periplasmic binding protein
1929	 45.64	0	2256442..2258139	+	565	88603251	-	Mhun_2000	-	radical SAM family protein
1930	 39.02	-1	2258288..2258551	-	87	88603252	-	Mhun_2001	-	hypothetical protein
1931	 43.22	0	2258986..2259855	-	289	88603253	-	Mhun_2002	-	hypothetical protein
1932	 40.95	0	2260261..2260470	+	69	88603254	-	Mhun_2003	-	molybdenum-pterin binding domain-containing protein
1933	 44.33	0	2260540..2261130	+	196	88603255	-	Mhun_2004	-	formylmethanofuran dehydrogenase, subunit E region
1934	 48.76	0	2261169..2262017	+	282	88603256	-	Mhun_2005	-	hypothetical protein
1935	 46.67	0	2262038..2262877	+	279	88603257	-	Mhun_2006	-	hypothetical protein
1936	 47.69	0	2262775..2263617	-	280	88603258	-	Mhun_2007	-	hypothetical protein
1937	 46.12	0	2263654..2264310	-	218	88603259	-	Mhun_2008	-	ABC transporter related
1938	 47.79	0	2264303..2265118	-	271	88603260	-	Mhun_2009	-	NifC-like ABC-type porter
1939	 46.10	0	2265125..2265931	-	268	88603261	-	Mhun_2010	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1940	 38.10	-1	2266256..2266465	-	69	88603262	-	Mhun_2011	-	molybdenum-pterin binding domain-containing protein
1941	 46.38	0	2266805..2267371	+	188	88603263	-	Mhun_2012	-	ATPase
1942	 45.95	0	2267378..2268217	-	279	88603264	-	Mhun_2013	-	hypothetical protein
1943	 48.94	0	2268219..2269115	-	298	88603265	-	Mhun_2014	-	hypothetical protein
1944	 44.95	0	2269866..2270717	-	283	88603266	-	Mhun_2016	-	methyltransferase
1945	 43.24	0	2270977..2272086	+	369	88603267	-	Mhun_2017	-	transport system permease protein
1946	 41.13	0	2272077..2272910	+	277	88603268	-	Mhun_2018	-	ABC transporter related
1947	 45.85	0	2272933..2273715	-	260	88603269	-	Mhun_2019	-	formate dehydrogenase family accessory protein FdhD
1948	 46.43	0	2273802..2275046	-	414	88603270	-	Mhun_2020	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
1949	 47.02	0	2275048..2277108	-	686	88603271	-	Mhun_2021	-	formate dehydrogenase, alpha subunit
1950	 46.09	0	2277402..2278553	-	383	88603272	-	Mhun_2022	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
1951	 46.26	0	2278555..2280612	-	685	88603273	-	Mhun_2023	-	formate dehydrogenase, alpha subunit
1952	 39.78	-1	2281613..2283148	-	511	88603274	-	Mhun_2024	-	PAS/PAC sensor signal transduction histidine kinase
1953	 34.82	-2	2283328..2284938	+	536	88603275	-	Mhun_2025	-	transposase, IS4
1954	 40.17	-1	2284961..2286496	-	511	88603276	-	Mhun_2026	-	putative PAS/PAC sensor protein
1955	 45.15	0	2288220..2289116	-	298	88603277	-	Mhun_2028	-	modD protein
1956	 44.81	0	2289246..2290613	-	455	88603278	-	Mhun_2029	-	MATE efflux family protein
1957	 46.53	0	2290661..2292085	-	474	88603279	-	Mhun_2030	-	major facilitator transporter
1958	 32.53	-2	2292226..2292723	-	165	88603280	-	Mhun_2031	-	response regulator receiver domain-containing protein
1959	 38.21	-1	2292729..2296586	-	1285	88603281	-	Mhun_2032	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1960	 32.84	-2	2296850..2297455	-	201	88603282	-	Mhun_2033	-	hypothetical protein
1961	 36.45	-1	2297419..2297835	-	138	88603283	-	Mhun_2034	-	hypothetical protein
1962	 32.20	-2	2297914..2299320	+	468	88603284	-	Mhun_2035	-	putative PAS/PAC sensor protein
1963	 42.62	0	2299651..2300016	-	121	88603285	-	Mhun_2036	-	hypothetical protein
1964	 34.57	-2	2300013..2300498	-	161	88603286	-	Mhun_2037	-	response regulator receiver domain-containing protein
1965	 36.13	-1	2300593..2302167	+	524	88603287	-	Mhun_2038	-	signal transduction histidine kinase regulating citrate/malate metabolism
1966	 36.84	-1	2302196..2302537	+	113	88603288	-	Mhun_2039	-	hypothetical protein
1967	 34.22	-2	2302534..2302872	+	112	88603289	-	Mhun_2040	-	hypothetical protein
1968	 35.53	-2	2302865..2303092	+	75	88603290	-	Mhun_2041	-	hypothetical protein
1969	 45.90	0	2303141..2304310	-	389	88603291	-	Mhun_2042	-	molybdopterin binding domain-containing protein
1970	 45.59	0	2304771..2306018	+	415	88603292	-	Mhun_2043	-	extracellular ligand-binding receptor
1971	 43.64	0	2306130..2306585	+	151	88603293	-	Mhun_2044	-	hypothetical protein
1972	 47.83	0	2306616..2307215	+	199	88603294	-	Mhun_2045	-	tetratricopeptide TPR_2
1973	 49.10	0	2307255..2308034	+	259	88603295	-	Mhun_2046	-	hypothetical protein
1974	 49.78	0	2308049..2312608	+	1519	88603296	-	Mhun_2047	-	hypothetical protein
1975	 50.38	0	2312618..2313415	+	265	88603297	-	Mhun_2048	-	hypothetical protein
1976	 50.68	0	2313445..2314101	+	218	88603298	-	Mhun_2049	-	hypothetical protein
1977	 45.36	0	2314358..2315230	-	290	88603299	-	Mhun_2050	-	ATP phosphoribosyltransferase
1978	 45.96	0	2315902..2316297	+	131	88603300	-	Mhun_2051	-	phosphoribosyl-AMP cyclohydrolase
1979	 45.72	0	2316650..2317093	+	147	88603301	-	Mhun_2052	-	hypothetical protein
1980	 46.44	0	2317136..2319469	-	777	88603302	-	Mhun_2053	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1981	 45.95	0	2319628..2320404	+	258	88603303	-	Mhun_2054	-	extracellular solute-binding protein
1982	 41.15	0	2320360..2320602	-	80	88603304	-	Mhun_2055	-	hypothetical protein
1983	 40.64	-1	2320750..2321310	+	186	88603305	-	Mhun_2056	-	hypothetical protein
1984	 47.32	0	2321745..2323331	+	528	88603306	-	Mhun_2057	-	hypothetical protein
1985	 45.83	0	2323460..2325163	+	567	88603307	-	Mhun_2058	-	hypothetical protein
1986	 43.71	0	2326519..2326836	+	105	88603308	-	Mhun_2059	-	excisionase/Xis, DNA-binding
1987	 50.86	+1	2326973..2329927	-	984	88603309	-	Mhun_2060	-	tetratricopeptide TPR_2
1988	 50.56	0	2330191..2336232	-	2013	88603310	-	Mhun_2061	-	putative DNA helicase
1989	 46.57	0	2336567..2337397	+	276	88603311	-	Mhun_2062	-	hypothetical protein
1990	 42.10	0	2337460..2338098	+	212	88603312	-	Mhun_2063	-	hypothetical protein
1991	 42.67	0	2338079..2338378	-	99	88603313	-	Mhun_2064	-	hypothetical protein
1992	 50.72	0	2338407..2339861	-	484	88603314	-	Mhun_2065	-	FAD dependent oxidoreductase
1993	 49.46	0	2340319..2341062	-	247	88603315	-	Mhun_2067	-	4Fe-4S ferredoxin, iron-sulfur binding
1994	 49.90	0	2341099..2341593	-	164	88603316	-	Mhun_2068	-	hypothetical protein
1995	 48.55	0	2341772..2343874	+	700	88603317	-	Mhun_2069	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1996	 47.03	0	2343895..2345106	-	403	88603318	-	Mhun_2070	-	hypothetical protein
1997	 43.09	0	2345145..2346005	-	286	88603319	-	Mhun_2071	-	hypothetical protein
1998	 48.10	0	2346034..2347740	-	568	88603320	-	Mhun_2072	-	TrkA-N
1999	 44.78	0	2347818..2348612	+	264	88603321	-	Mhun_2073	-	hypothetical protein
2000	 45.27	0	2348624..2350516	-	630	88603322	-	Mhun_2074	-	clostripain
2001	 47.58	0	2350578..2351918	+	446	88603323	-	Mhun_2075	-	ThiJ/PfpI
2002	 46.37	0	2351919..2353790	-	623	88603324	-	Mhun_2076	-	hypothetical protein
2003	 49.74	0	2353847..2354791	-	314	88603325	-	Mhun_2077	-	tetratricopeptide TPR_2
2004	 47.67	0	2354849..2356264	-	471	88603326	-	Mhun_2078	-	TPR repeat-containing protein
2005	 52.07	+1	2356488..2357720	+	410	88603327	-	Mhun_2079	-	nuclease SbcCD, D subunit
2006	 46.91	0	2357725..2361384	+	1219	88603328	-	Mhun_2080	-	exonuclease SbcC
2007	 49.58	0	2361426..2361782	+	118	88603329	-	Mhun_2081	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.