IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1582	 42.64	0	1853141..1853806	+	221	88602904	-	Mhun_1632	-	hypothetical protein
1583	 47.10	0	1853958..1855388	+	476	88602905	-	Mhun_1633	-	general substrate transporter
1584	 50.89	+1	1855443..1855835	+	130	88602906	-	Mhun_1634	-	hypothetical protein
1585	 46.91	0	1855844..1856491	+	215	88602907	-	Mhun_1635	-	hypothetical protein
1586	 45.00	0	1856475..1856714	+	79	88602908	-	Mhun_1636	-	hypothetical protein
1587	 41.96	0	1857065..1857319	+	84	88602909	-	Mhun_1637	-	hypothetical protein
1588	 43.97	0	1857389..1857952	+	187	88602910	-	Mhun_1638	-	NADPH-dependent FMN reductase
1589	 42.49	0	1858232..1859236	-	334	88602911	-	Mhun_1639	-	hypothetical protein
1590	 41.14	0	1859524..1859856	-	110	88602912	-	Mhun_1640	-	nitrogen regulatory protein P-II (GlnB, GlnK)
1591	 45.18	0	1860033..1862615	+	860	88602913	-	Mhun_1641	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1592	 40.53	-1	1862759..1863133	+	124	88602914	-	Mhun_1642	-	CheW protein
1593	 43.95	0	1863145..1863747	+	200	88602915	-	Mhun_1643	-	response regulator receiver domain-containing protein
1594	 47.43	0	1863808..1864701	+	297	88602916	-	Mhun_1644	-	ArsR family transcriptional regulator
1595	 49.21	0	1864698..1864949	+	83	88602917	-	Mhun_1645	-	hypothetical protein
1596	 50.41	0	1864942..1866048	+	368	88602918	-	Mhun_1646	-	radical SAM family protein
1597	 43.30	0	1866059..1867975	-	638	88602919	-	Mhun_1647	-	PAS/PAC sensor signal transduction histidine kinase
1598	 50.46	0	1868063..1870468	-	801	88602920	-	Mhun_1648	-	methyl-accepting chemotaxis sensory transducer
1599	 47.07	0	1870458..1872110	-	550	88602921	-	Mhun_1649	-	response regulator receiver sensor signal transduction histidine kinase
1600	 49.78	0	1872116..1872346	-	76	88602922	-	Mhun_1650	-	hypothetical protein
1601	 45.47	0	1872367..1873182	-	271	88602923	-	Mhun_1651	-	histidine kinase, HAMP region
1602	 50.18	0	1873409..1874263	+	284	88602924	-	Mhun_1652	-	phosphate binding protein
1603	 49.20	0	1874328..1875014	-	228	88602925	-	Mhun_1653	-	ABC transporter related
1604	 45.42	0	1875011..1876210	-	399	88602926	-	Mhun_1654	-	hypothetical protein
1605	 51.54	+1	1876207..1877502	-	431	88602927	-	Mhun_1655	-	S-layer-like domain-containing protein
1606	 45.35	0	1877587..1878177	+	196	88602928	-	Mhun_1656	-	TetR family transcriptional regulator
1607	 44.28	0	1878195..1878806	+	203	88602929	-	Mhun_1657	-	hypothetical protein
1608	 47.19	0	1878994..1881078	-	694	88602930	-	Mhun_1658	-	hypothetical protein
1609	 53.23	+1	1881075..1882049	-	324	88602931	-	Mhun_1659	-	hypothetical protein
1610	 45.19	0	1882326..1883219	+	297	88602932	-	Mhun_1660	-	hypothetical protein
1611	 37.35	-1	1883409..1884704	-	431	88602933	-	Mhun_1661	-	hypothetical protein
1612	 35.14	-2	1885613..1885888	+	91	88602934	-	Mhun_1662	-	hypothetical protein
1613	 34.16	-2	1885878..1886240	+	120	88602935	-	Mhun_1663	-	PilT protein-like
1614	 47.62	0	1886790..1886999	+	69	88602936	-	Mhun_1664	-	type I site-specific deoxyribonuclease
1615	 41.57	0	1889158..1889655	+	165	88602937	-	Mhun_1666	-	hypothetical protein
1616	 46.95	0	1889645..1890415	+	256	88602938	-	Mhun_1667	-	hypothetical protein
1617	 40.42	-1	1890418..1890657	+	79	88602939	-	Mhun_1668	-	hypothetical protein
1618	 32.40	-2	1891256..1892002	+	248	88602940	-	Mhun_1670	-	transposase, putative
1619	 45.96	0	1892971..1893366	-	131	88602941	-	Mhun_1672	-	zinc finger, SWIM-type
1620	 49.48	0	1893513..1896659	+	1048	88602942	-	Mhun_1673	-	SNF2-related
1621	 49.33	0	1896656..1897549	+	297	88602943	-	Mhun_1674	-	zinc finger, SWIM-type
1622	 43.94	0	1897868..1899112	+	414	88602944	-	Mhun_1675	-	hypothetical protein
1623	 42.76	0	1899176..1899886	+	236	88602945	-	Mhun_1676	-	alpha/beta hydrolase
1624	 41.88	0	1900164..1900736	+	190	88602946	-	Mhun_1677	-	hypothetical protein
1625	 42.98	0	1900911..1902362	-	483	88602947	-	Mhun_1678	-	adenosine/AMP deaminase
1626	 40.59	-1	1902457..1902759	-	100	88602948	-	Mhun_1679	-	hypothetical protein
1627	 42.56	0	1902870..1903259	-	129	88602949	-	Mhun_1680	-	HEPN
1628	 36.11	-1	1903267..1903590	-	107	88602950	-	Mhun_1681	-	DNA polymerase, beta-like region
1629	 52.04	+1	1904719..1905354	-	211	88602951	-	Mhun_1683	-	PKD
1630	 47.67	0	1906023..1906817	-	264	88602952	-	Mhun_1685	-	hypothetical protein
1631	 50.81	+1	1906937..1907428	-	163	88602953	-	Mhun_1686	-	HNH endonuclease
1632	 46.98	0	1907552..1908445	+	297	88602954	-	Mhun_1687	-	metal dependent phosphohydrolase
1633	 42.52	0	1908603..1909157	+	184	88602955	-	Mhun_1688	-	hypothetical protein
1634	 42.97	0	1909330..1909962	-	210	88602956	-	Mhun_1689	-	hypothetical protein
1635	 52.93	+1	1909976..1910674	-	232	88602957	-	Mhun_1690	-	hypothetical protein
1636	 45.44	0	1910786..1911727	-	313	88602958	-	Mhun_1691	-	hypothetical protein
1637	 47.55	0	1911965..1913884	+	639	88602959	-	Mhun_1692	-	peptidase U34, dipeptidase
1638	 49.39	0	1913899..1915698	+	599	88602960	-	Mhun_1693	-	hypothetical protein
1639	 47.50	0	1915768..1916487	+	239	88602961	-	Mhun_1694	-	iron-sulfur cluster binding protein
1640	 46.78	0	1916484..1916825	+	113	88602962	-	Mhun_1695	-	4Fe-4S ferredoxin, iron-sulfur binding
1641	 43.19	0	1917012..1918097	+	361	88602963	-	Mhun_1696	-	hypothetical protein
1642	 41.14	0	1918208..1918963	+	251	88602964	-	Mhun_1697	-	acylphosphatase-like protein
1643	 39.22	-1	1921029..1921283	+	84	88602965	-	Mhun_1699	-	hypothetical protein
1644	 34.75	-2	1921289..1921570	+	93	88602966	-	Mhun_1700	-	hypothetical protein
1645	 42.93	0	1922441..1923034	+	197	88602967	-	Mhun_1702	-	hypothetical protein
1646	 41.78	0	1923146..1923370	+	74	88602968	-	Mhun_1703	-	hypothetical protein
1647	 47.42	0	1923600..1924259	-	219	88602969	-	Mhun_1705	-	beta-lactamase-like
1648	 48.37	0	1924267..1924878	-	203	88602970	-	Mhun_1706	-	response regulator receiver domain-containing protein
1649	 53.05	+1	1925131..1926849	+	572	88602971	-	Mhun_1707	-	glycyl-tRNA synthetase
1650	 52.24	+1	1926849..1929101	+	750	88602972	-	Mhun_1708	-	Hef nuclease
1651	 52.53	+1	1929071..1929466	-	131	88602973	-	Mhun_1709	-	hypothetical protein
1652	 50.38	0	1929530..1929793	+	87	88602974	-	Mhun_1710	-	hypothetical protein
1653	 48.97	0	1929868..1930353	-	161	88602975	-	Mhun_1711	-	hypothetical protein
1654	 52.07	+1	1930346..1931626	-	426	88602976	-	Mhun_1712	-	thiamine biosynthesis protein ThiC
1655	 48.88	0	1931850..1932518	+	222	88602977	-	Mhun_1713	-	radical SAM family protein
1656	 53.83	+1	1932496..1933017	+	173	88602978	-	Mhun_1714	-	hypothetical protein
1657	 49.55	0	1933014..1933784	+	256	88602979	-	Mhun_1715	-	xylose isomerase-like TIM barrel
1658	 51.31	+1	1933775..1934725	+	316	88602980	-	Mhun_1716	-	ribonuclease Z
1659	 50.79	+1	1934943..1936781	+	612	88602981	-	Mhun_1717	-	phosphoesterase, RecJ-like
1660	 44.84	0	1936867..1937118	+	83	88602982	-	Mhun_1718	-	hypothetical protein
1661	 41.95	0	1937399..1937839	-	146	88602983	-	Mhun_1719	-	hypothetical protein
1662	 51.67	+1	1937890..1939149	-	419	88602984	-	Mhun_1720	-	major facilitator transporter
1663	 51.64	+1	1939169..1941058	-	629	88602985	-	Mhun_1721	-	acetate--CoA ligase
1664	 47.57	0	1941341..1942780	+	479	88602986	-	Mhun_1722	-	putative PAS/PAC sensor protein
1665	 46.71	0	1942841..1945135	+	764	88602987	-	Mhun_1723	-	signal transduction histidine kinase
1666	 49.29	0	1945132..1946190	+	352	88602988	-	Mhun_1724	-	response regulator receiver domain-containing protein
1667	 45.94	0	1946172..1946750	-	192	88602989	-	Mhun_1725	-	hypothetical protein
1668	 44.89	0	1946938..1947309	-	123	88602990	-	Mhun_1726	-	hypothetical protein
1669	 48.64	0	1947309..1947785	-	158	88602991	-	Mhun_1727	-	acylphosphatase
1670	 50.85	+1	1947823..1949460	-	545	88602992	pheT	Mhun_1728	-	phenylalanyl-tRNA synthetase subunit beta
1671	 53.03	+1	1949460..1950896	-	478	88602993	pheS	Mhun_1729	-	phenylalanyl-tRNA synthetase subunit alpha
1672	 43.48	0	1951871..1953013	-	380	88602994	-	Mhun_1731	-	filamentation induced by cAMP protein Fic
1673	 50.91	+1	1953444..1954712	-	422	88602995	-	Mhun_1732	-	tryptophan--tRNA ligase
1674	 48.61	0	1954717..1955724	-	335	88602996	-	Mhun_1733	-	tRNA splicing endonuclease
1675	 46.20	0	1956428..1957702	+	424	88602997	-	Mhun_1734	-	hypothetical protein
1676	 43.01	0	1957866..1958330	+	154	88602998	-	Mhun_1735	-	hypothetical protein
1677	 48.66	0	1958432..1959442	+	336	88602999	-	Mhun_1736	-	hypothetical protein
1678	 47.22	0	1959494..1960177	+	227	88603000	-	Mhun_1737	-	nitrite and sulphite reductase 4Fe-4S region
1679	 45.43	0	1960180..1960518	+	112	88603001	-	Mhun_1738	-	cupin 2, barrel
1680	 43.63	0	1960558..1963083	-	841	88603002	-	Mhun_1739	-	multi-sensor signal transduction histidine kinase
1681	 48.56	0	1963356..1964189	+	277	88603003	-	Mhun_1740	-	nitroreductase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.