IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1495	 50.76	0	1775868..1776590	-	240	88602817	-	Mhun_1545	-	hypothetical protein
1496	 42.93	0	1776684..1777517	-	277	88602818	-	Mhun_1546	-	hypothetical protein
1497	 48.22	0	1777630..1778778	-	382	88602819	-	Mhun_1547	-	hypothetical protein
1498	 43.84	0	1778786..1779061	-	91	88602820	-	Mhun_1548	-	hypothetical protein
1499	 47.49	0	1779128..1779685	-	185	88602821	-	Mhun_1549	-	isochorismatase hydrolase
1500	 51.34	+1	1779682..1780542	-	286	88602822	-	Mhun_1550	-	GCN5-related N-acetyltransferase
1501	 41.04	0	1780627..1781145	+	172	88602823	-	Mhun_1551	-	hypothetical protein
1502	 35.80	-1	1781140..1781706	-	188	88602824	-	Mhun_1552	-	hypothetical protein
1503	 46.48	0	1781739..1782575	-	278	88602825	-	Mhun_1553	-	ArsR family transcriptional regulator
1504	 48.26	0	1782610..1783842	+	410	88602826	-	Mhun_1554	-	beta-lactamase-like
1505	 47.64	0	1783850..1785352	-	500	88602827	-	Mhun_1555	-	transglutaminase-like
1506	 45.58	0	1785520..1785813	+	97	88602828	-	Mhun_1556	-	hypothetical protein
1507	 51.11	+1	1785927..1786601	+	224	88602829	-	Mhun_1557	-	multiple antibiotic resistance (MarC)-related proteins
1508	 51.14	+1	1786603..1787349	-	248	88602830	-	Mhun_1558	-	sulphohydrolase/glycosulfatase, Zn-dependent hydrolase
1509	 46.20	0	1787440..1787991	-	183	88602831	-	Mhun_1559	-	hypothetical protein
1510	 49.70	0	1788028..1789194	-	388	88602832	-	Mhun_1560	-	radical SAM family protein
1511	 46.50	0	1789244..1790557	-	437	88602833	-	Mhun_1561	-	acetyl-CoA hydrolase/transferase
1512	 43.43	0	1790871..1791593	+	240	88602834	-	Mhun_1562	-	hypothetical protein
1513	 44.81	0	1791682..1793406	+	574	88602835	-	Mhun_1563	-	multi-sensor signal transduction histidine kinase
1514	 45.82	0	1793412..1794452	-	346	88602836	-	Mhun_1564	-	hypothetical protein
1515	 50.26	0	1794563..1795147	+	194	88602837	-	Mhun_1565	-	hypothetical protein
1516	 50.27	0	1795387..1795941	+	184	88602838	-	Mhun_1566	-	RNA recognition motif-containing protein
1517	 49.76	0	1796000..1796827	-	275	88602839	-	Mhun_1567	-	acetyltransferases and hydrolases with the alpha/beta hydrolase fold-like
1518	 48.11	0	1796830..1797411	-	193	88602840	-	Mhun_1568	-	hypothetical protein
1519	 42.57	0	1797552..1798580	+	342	88602841	-	Mhun_1569	-	MscS mechanosensitive ion channel
1520	 46.60	0	1798636..1798944	+	102	88602842	-	Mhun_1570	-	carboxymuconolactone decarboxylase
1521	 48.72	0	1798941..1800149	+	402	88602843	-	Mhun_1571	-	hypothetical protein
1522	 44.96	0	1800225..1800869	+	214	88602844	-	Mhun_1572	-	response regulator receiver domain-containing protein
1523	 50.44	0	1800889..1801227	-	112	88602845	-	Mhun_1573	-	RNA recognition motif-containing protein
1524	 44.44	0	1801428..1801976	-	182	88602846	-	Mhun_1574	-	hypothetical protein
1525	 45.95	0	1802020..1802946	-	308	88602847	-	Mhun_1575	-	cupin 2, barrel
1526	 45.93	0	1802999..1803268	-	89	88602848	-	Mhun_1576	-	hypothetical protein
1527	 44.36	0	1803355..1804479	+	374	88602849	-	Mhun_1577	-	hypothetical protein
1528	 36.73	-1	1804484..1804807	-	107	88602850	-	Mhun_1578	-	hypothetical protein
1529	 46.10	0	1804820..1805383	-	187	88602851	-	Mhun_1579	-	hypothetical protein
1530	 47.98	0	1805441..1806082	-	213	88602852	-	Mhun_1580	-	hypothetical protein
1531	 46.72	0	1807086..1807787	+	233	88602853	-	Mhun_1581	-	hypothetical protein
1532	 49.75	0	1807784..1808569	-	261	88602854	-	Mhun_1582	-	NUDIX hydrolase
1533	 48.25	0	1808659..1809228	-	189	88602855	-	Mhun_1583	-	glutamine amidotransferase class-I
1534	 50.74	0	1809231..1809908	-	225	88602856	-	Mhun_1584	-	protein of unknown function DUF71, ATP-binding region
1535	 47.99	0	1809905..1810675	-	256	88602857	-	Mhun_1585	-	hypothetical protein
1536	 49.79	0	1810700..1811908	-	402	88602858	-	Mhun_1586	-	TraB family protein
1537	 49.26	0	1811901..1812440	-	179	88602859	-	Mhun_1587	-	hypothetical protein
1538	 49.56	0	1812437..1813003	-	188	88602860	-	Mhun_1588	-	GMP synthase subunit A
1539	 51.87	+1	1813040..1814053	-	337	88602861	-	Mhun_1589	-	hypothetical protein
1540	 53.42	+1	1814135..1814866	+	243	88602862	-	Mhun_1590	-	cobalamin 5'-phosphate synthase
1541	 48.77	0	1814905..1815228	-	107	88602863	-	Mhun_1591	-	hypothetical protein
1542	 52.19	+1	1815411..1816688	+	425	88602864	-	Mhun_1592	-	elongation factor 1-alpha
1543	 51.78	+1	1816706..1817014	+	102	88602865	rps10p	Mhun_1593	-	30S ribosomal protein S10P
1544	 45.61	0	1817213..1818760	+	515	88602866	-	Mhun_1594	-	glycosyl transferase family protein
1545	 44.89	0	1819016..1820209	-	397	88602867	-	Mhun_1595	-	hypothetical protein
1546	 47.38	0	1820217..1821398	-	393	88602868	-	Mhun_1596	-	tubulin/FtsZ, GTPase
1547	 47.38	0	1821519..1822757	+	412	88602869	-	Mhun_1597	-	hypothetical protein
1548	 51.40	+1	1822758..1823471	+	237	88602870	-	Mhun_1598	-	glycosyl transferase family protein
1549	 50.00	0	1823461..1824420	+	319	88602871	-	Mhun_1599	-	hypothetical protein
1550	 50.00	0	1824424..1826511	+	695	88602872	-	Mhun_1600	-	hypothetical protein
1551	 50.68	0	1826664..1827032	+	122	88602873	rpl7ae	Mhun_1601	-	50S ribosomal protein L7Ae
1552	 52.94	+1	1827038..1827241	+	67	88602874	rps28e	Mhun_1602	-	30S ribosomal protein S28e
1553	 50.00	0	1827247..1827438	+	63	88602875	-	Mhun_1603	-	ribosomal protein L24E
1554	 47.78	0	1827441..1827890	+	149	88602876	-	Mhun_1604	-	nucleoside-diphosphate kinase
1555	 45.45	0	1827987..1828745	+	252	88602877	-	Mhun_1605	-	tetratricopeptide TPR_2
1556	 47.30	0	1828814..1829536	+	240	88602878	-	Mhun_1606	-	tetratricopeptide TPR_2
1557	 48.84	0	1829547..1830107	-	186	88602879	-	Mhun_1607	-	response regulator receiver domain-containing protein
1558	 46.89	0	1830190..1830978	-	262	88602880	-	Mhun_1608	-	cobalt transport protein
1559	 52.96	+1	1830975..1832411	-	478	88602881	-	Mhun_1609	-	ABC transporter related
1560	 48.72	0	1832408..1832953	-	181	88602882	-	Mhun_1610	-	hypothetical protein
1561	 50.62	0	1833155..1833877	-	240	88602883	-	Mhun_1611	-	hypothetical protein
1562	 46.09	0	1833980..1835476	+	498	88602884	-	Mhun_1612	-	hypothetical protein
1563	 48.11	0	1835489..1836124	-	211	88602885	-	Mhun_1613	-	response regulator receiver domain-containing protein
1564	 49.45	0	1836198..1837283	-	361	88602886	-	Mhun_1614	-	band 7 protein
1565	 47.37	0	1837284..1837739	-	151	88602887	-	Mhun_1615	-	hypothetical protein
1566	 47.25	0	1837799..1838653	-	284	88602888	-	Mhun_1616	-	hypothetical protein
1567	 50.28	0	1838972..1839331	+	119	88602889	-	Mhun_1617	-	roadblock/LC7 domain-contain protein
1568	 46.25	0	1839331..1839957	+	208	88602890	-	Mhun_1618	-	response regulator receiver domain-containing protein
1569	 51.20	+1	1840034..1841242	+	402	88602891	-	Mhun_1619	-	threonine synthase
1570	 47.52	0	1841365..1841787	+	140	88602892	-	Mhun_1620	-	hypothetical protein
1571	 45.80	0	1842306..1842746	+	146	88602893	-	Mhun_1621	-	hypothetical protein
1572	 51.67	+1	1842810..1843349	-	179	88602894	-	Mhun_1622	-	ThiJ/PfpI
1573	 43.68	0	1843432..1843866	-	144	88602895	-	Mhun_1623	-	amino acid-binding ACT
1574	 50.00	0	1843866..1845167	-	433	88602896	-	Mhun_1624	-	phenylacetate--CoA ligase
1575	 50.39	0	1845167..1846456	-	429	88602897	-	Mhun_1625	-	phenylacetate--CoA ligase
1576	 47.96	0	1846726..1847388	+	220	88602898	-	Mhun_1626	-	NADPH-dependent FMN reductase
1577	 50.41	0	1847399..1849114	-	571	88602899	-	Mhun_1627	-	AMP-dependent synthetase and ligase
1578	 51.78	+1	1849451..1850632	+	393	88602900	-	Mhun_1628	-	bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase
1579	 46.79	0	1850720..1852324	+	534	88602901	-	Mhun_1629	-	hypothetical protein
1580	 39.42	-1	1852337..1852681	-	114	88602902	-	Mhun_1630	-	transcriptional modulator of MazE/toxin, MazF
1581	 37.73	-1	1852681..1852953	-	90	88602903	-	Mhun_1631	-	hypothetical protein
1582	 42.64	0	1853141..1853806	+	221	88602904	-	Mhun_1632	-	hypothetical protein
1583	 47.10	0	1853958..1855388	+	476	88602905	-	Mhun_1633	-	general substrate transporter
1584	 50.89	+1	1855443..1855835	+	130	88602906	-	Mhun_1634	-	hypothetical protein
1585	 46.91	0	1855844..1856491	+	215	88602907	-	Mhun_1635	-	hypothetical protein
1586	 45.00	0	1856475..1856714	+	79	88602908	-	Mhun_1636	-	hypothetical protein
1587	 41.96	0	1857065..1857319	+	84	88602909	-	Mhun_1637	-	hypothetical protein
1588	 43.97	0	1857389..1857952	+	187	88602910	-	Mhun_1638	-	NADPH-dependent FMN reductase
1589	 42.49	0	1858232..1859236	-	334	88602911	-	Mhun_1639	-	hypothetical protein
1590	 41.14	0	1859524..1859856	-	110	88602912	-	Mhun_1640	-	nitrogen regulatory protein P-II (GlnB, GlnK)
1591	 45.18	0	1860033..1862615	+	860	88602913	-	Mhun_1641	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1592	 40.53	-1	1862759..1863133	+	124	88602914	-	Mhun_1642	-	CheW protein
1593	 43.95	0	1863145..1863747	+	200	88602915	-	Mhun_1643	-	response regulator receiver domain-containing protein
1594	 47.43	0	1863808..1864701	+	297	88602916	-	Mhun_1644	-	ArsR family transcriptional regulator
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.