IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1444	 39.49	-1	1712732..1712926	+	64	88602766	-	Mhun_1491	-	30S ribosomal protein S17e
1445	 49.09	0	1712932..1713807	+	291	88602767	-	Mhun_1492	-	dihydrodipicolinate synthase
1446	 51.11	+1	1713800..1714564	+	254	88602768	-	Mhun_1493	-	dihydrodipicolinate reductase
1447	 43.68	0	1714616..1714789	+	57	88602769	-	Mhun_1494	-	4Fe-4S ferredoxin, iron-sulfur binding
1448	 52.02	+1	1714965..1715981	+	338	88602770	-	Mhun_1495	-	aspartate-semialdehyde dehydrogenase
1449	 42.11	0	1715987..1716271	+	94	88602771	-	Mhun_1496	-	chromatin protein
1450	 47.49	0	1716332..1716769	+	145	88602772	-	Mhun_1497	-	hypothetical protein
1451	 49.09	0	1716788..1717447	+	219	88602773	-	Mhun_1498	-	multiple antibiotic resistance (MarC)-related proteins
1452	 46.05	0	1717468..1717695	-	75	88602774	-	Mhun_1499	-	hydrogenase assembly chaperone hypC/hupF
1453	 48.20	0	1717779..1718780	+	333	88602775	-	Mhun_1500	-	hypothetical protein
1454	 47.22	0	1718792..1719259	-	155	88602776	-	Mhun_1501	-	FHA domain-containing protein
1455	 47.44	0	1719309..1721102	-	597	88602777	-	Mhun_1502	-	ATPase AAA-2
1456	 47.05	0	1721288..1723876	-	862	88602778	-	Mhun_1503	-	TPR repeat-containing serine/threonin protein kinase
1457	 45.44	0	1723915..1725525	-	536	88602779	-	Mhun_1504	-	hypothetical protein
1458	 47.15	0	1725525..1726313	-	262	88602780	-	Mhun_1505	-	protein serine/threonine phosphatases
1459	 47.33	0	1726456..1726755	+	99	88602781	-	Mhun_1506	-	hypothetical protein
1460	 50.99	+1	1726857..1727411	+	184	88602782	-	Mhun_1507	-	hypothetical protein
1461	 51.50	+1	1727408..1728007	+	199	88602783	-	Mhun_1508	-	metal dependent phosphohydrolase
1462	 51.66	+1	1728337..1729362	+	341	88602784	-	Mhun_1509	-	tetratricopeptide TPR_2
1463	 52.35	+1	1731871..1735698	-	1275	88602785	-	Mhun_1511	-	hypothetical protein
1464	 28.69	-2	1735874..1739236	-	1120	88602786	-	Mhun_1512	-	hypothetical protein
1465	 34.26	-2	1739241..1741175	-	644	88602787	-	Mhun_1513	-	hypothetical protein
1466	 34.13	-2	1741178..1744426	-	1082	88602788	-	Mhun_1514	-	helicase-like
1467	 40.64	-1	1744463..1744900	-	145	88602789	-	Mhun_1515	-	hypothetical protein
1468	 32.84	-2	1744995..1745600	-	201	88602790	-	Mhun_1516	-	hypothetical protein
1469	 36.45	-1	1745564..1745980	-	138	88602791	-	Mhun_1517	-	hypothetical protein
1470	 35.76	-1	1746330..1746494	+	54	88602792	-	Mhun_1518	-	transposon-encoded protein
1471	 39.38	-1	1746484..1748004	+	506	88602793	-	Mhun_1519	-	transposase IS66
1472	 40.35	-1	1748896..1749123	+	75	88602794	-	Mhun_1520	-	hypothetical protein
1473	 36.17	-1	1750382..1751368	-	328	88602795	-	Mhun_1522	-	transposase, IS4
1474	 39.17	-1	1751529..1753139	+	536	88602796	-	Mhun_1523	-	transposase, IS4
1475	 37.30	-1	1753568..1755205	+	545	88602797	-	Mhun_1524	-	transposase
1476	 51.74	+1	1757392..1757793	-	133	88602798	-	Mhun_1526	-	hypothetical protein
1477	 34.91	-2	1758140..1758457	+	105	88602799	-	Mhun_1527	-	hypothetical protein
1478	 47.33	0	1758673..1759422	-	249	88602800	-	Mhun_1528	-	hypothetical protein
1479	 49.04	0	1759424..1760410	-	328	88602801	-	Mhun_1529	-	daunorubicin resistance ABC transporter ATP-binding subunit
1480	 43.33	0	1760496..1760975	-	159	88602802	-	Mhun_1530	-	PadR-like family transcriptional regulator
1481	 39.70	-1	1761143..1761613	-	156	88602803	-	Mhun_1531	-	hypothetical protein
1482	 49.21	0	1762017..1764410	-	797	88602804	-	Mhun_1532	-	ATP-dependent protease La
1483	 45.48	0	1764460..1764879	-	139	88602805	-	Mhun_1533	-	MarR family transcriptional regulator
1484	 46.07	0	1765025..1765699	+	224	88602806	-	Mhun_1534	-	hypothetical protein
1485	 46.44	0	1765704..1766771	-	355	88602807	-	Mhun_1535	-	hypothetical protein
1486	 34.82	-2	1766960..1768570	+	536	88602808	-	Mhun_1536	-	transposase, IS4
1487	 42.58	0	1768712..1770106	-	464	88602809	-	Mhun_1537	-	ATPase
1488	 48.95	0	1770177..1771508	-	443	88602810	-	Mhun_1538	-	hypothetical protein
1489	 46.67	0	1771621..1772055	-	144	88602811	-	Mhun_1539	-	hypothetical protein
1490	 45.59	0	1772251..1772715	+	154	88602812	-	Mhun_1540	-	hypothetical protein
1491	 54.10	+1	1772729..1773094	-	121	88602813	-	Mhun_1541	-	putative transcriptional regulator
1492	 46.27	0	1773234..1773434	+	66	88602814	-	Mhun_1542	-	4-oxalocrotonate tautomerase
1493	 48.97	0	1773499..1774323	+	274	88602815	-	Mhun_1543	-	nitroreductase
1494	 47.66	0	1774326..1775672	-	448	88602816	-	Mhun_1544	-	dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein
1495	 50.76	0	1775868..1776590	-	240	88602817	-	Mhun_1545	-	hypothetical protein
1496	 42.93	0	1776684..1777517	-	277	88602818	-	Mhun_1546	-	hypothetical protein
1497	 48.22	0	1777630..1778778	-	382	88602819	-	Mhun_1547	-	hypothetical protein
1498	 43.84	0	1778786..1779061	-	91	88602820	-	Mhun_1548	-	hypothetical protein
1499	 47.49	0	1779128..1779685	-	185	88602821	-	Mhun_1549	-	isochorismatase hydrolase
1500	 51.34	+1	1779682..1780542	-	286	88602822	-	Mhun_1550	-	GCN5-related N-acetyltransferase
1501	 41.04	0	1780627..1781145	+	172	88602823	-	Mhun_1551	-	hypothetical protein
1502	 35.80	-1	1781140..1781706	-	188	88602824	-	Mhun_1552	-	hypothetical protein
1503	 46.48	0	1781739..1782575	-	278	88602825	-	Mhun_1553	-	ArsR family transcriptional regulator
1504	 48.26	0	1782610..1783842	+	410	88602826	-	Mhun_1554	-	beta-lactamase-like
1505	 47.64	0	1783850..1785352	-	500	88602827	-	Mhun_1555	-	transglutaminase-like
1506	 45.58	0	1785520..1785813	+	97	88602828	-	Mhun_1556	-	hypothetical protein
1507	 51.11	+1	1785927..1786601	+	224	88602829	-	Mhun_1557	-	multiple antibiotic resistance (MarC)-related proteins
1508	 51.14	+1	1786603..1787349	-	248	88602830	-	Mhun_1558	-	sulphohydrolase/glycosulfatase, Zn-dependent hydrolase
1509	 46.20	0	1787440..1787991	-	183	88602831	-	Mhun_1559	-	hypothetical protein
1510	 49.70	0	1788028..1789194	-	388	88602832	-	Mhun_1560	-	radical SAM family protein
1511	 46.50	0	1789244..1790557	-	437	88602833	-	Mhun_1561	-	acetyl-CoA hydrolase/transferase
1512	 43.43	0	1790871..1791593	+	240	88602834	-	Mhun_1562	-	hypothetical protein
1513	 44.81	0	1791682..1793406	+	574	88602835	-	Mhun_1563	-	multi-sensor signal transduction histidine kinase
1514	 45.82	0	1793412..1794452	-	346	88602836	-	Mhun_1564	-	hypothetical protein
1515	 50.26	0	1794563..1795147	+	194	88602837	-	Mhun_1565	-	hypothetical protein
1516	 50.27	0	1795387..1795941	+	184	88602838	-	Mhun_1566	-	RNA recognition motif-containing protein
1517	 49.76	0	1796000..1796827	-	275	88602839	-	Mhun_1567	-	acetyltransferases and hydrolases with the alpha/beta hydrolase fold-like
1518	 48.11	0	1796830..1797411	-	193	88602840	-	Mhun_1568	-	hypothetical protein
1519	 42.57	0	1797552..1798580	+	342	88602841	-	Mhun_1569	-	MscS mechanosensitive ion channel
1520	 46.60	0	1798636..1798944	+	102	88602842	-	Mhun_1570	-	carboxymuconolactone decarboxylase
1521	 48.72	0	1798941..1800149	+	402	88602843	-	Mhun_1571	-	hypothetical protein
1522	 44.96	0	1800225..1800869	+	214	88602844	-	Mhun_1572	-	response regulator receiver domain-containing protein
1523	 50.44	0	1800889..1801227	-	112	88602845	-	Mhun_1573	-	RNA recognition motif-containing protein
1524	 44.44	0	1801428..1801976	-	182	88602846	-	Mhun_1574	-	hypothetical protein
1525	 45.95	0	1802020..1802946	-	308	88602847	-	Mhun_1575	-	cupin 2, barrel
1526	 45.93	0	1802999..1803268	-	89	88602848	-	Mhun_1576	-	hypothetical protein
1527	 44.36	0	1803355..1804479	+	374	88602849	-	Mhun_1577	-	hypothetical protein
1528	 36.73	-1	1804484..1804807	-	107	88602850	-	Mhun_1578	-	hypothetical protein
1529	 46.10	0	1804820..1805383	-	187	88602851	-	Mhun_1579	-	hypothetical protein
1530	 47.98	0	1805441..1806082	-	213	88602852	-	Mhun_1580	-	hypothetical protein
1531	 46.72	0	1807086..1807787	+	233	88602853	-	Mhun_1581	-	hypothetical protein
1532	 49.75	0	1807784..1808569	-	261	88602854	-	Mhun_1582	-	NUDIX hydrolase
1533	 48.25	0	1808659..1809228	-	189	88602855	-	Mhun_1583	-	glutamine amidotransferase class-I
1534	 50.74	0	1809231..1809908	-	225	88602856	-	Mhun_1584	-	protein of unknown function DUF71, ATP-binding region
1535	 47.99	0	1809905..1810675	-	256	88602857	-	Mhun_1585	-	hypothetical protein
1536	 49.79	0	1810700..1811908	-	402	88602858	-	Mhun_1586	-	TraB family protein
1537	 49.26	0	1811901..1812440	-	179	88602859	-	Mhun_1587	-	hypothetical protein
1538	 49.56	0	1812437..1813003	-	188	88602860	-	Mhun_1588	-	GMP synthase subunit A
1539	 51.87	+1	1813040..1814053	-	337	88602861	-	Mhun_1589	-	hypothetical protein
1540	 53.42	+1	1814135..1814866	+	243	88602862	-	Mhun_1590	-	cobalamin 5'-phosphate synthase
1541	 48.77	0	1814905..1815228	-	107	88602863	-	Mhun_1591	-	hypothetical protein
1542	 52.19	+1	1815411..1816688	+	425	88602864	-	Mhun_1592	-	elongation factor 1-alpha
1543	 51.78	+1	1816706..1817014	+	102	88602865	rps10p	Mhun_1593	-	30S ribosomal protein S10P
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.