IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1369	 46.33	0	1618669..1624887	-	2072	88602691	-	Mhun_1415	-	multi-sensor signal transduction histidine kinase
1370	 46.00	0	1625168..1626343	-	391	88602692	-	Mhun_1416	-	uracil-xanthine permease
1371	 47.03	0	1626497..1629664	-	1055	88602693	-	Mhun_1417	-	multi-sensor signal transduction histidine kinase
1372	 42.17	0	1629766..1630116	-	116	88602694	-	Mhun_1418	-	hypothetical protein
1373	 45.89	0	1630363..1632672	-	769	88602695	-	Mhun_1419	-	multi-sensor signal transduction histidine kinase
1374	 46.17	0	1632669..1636034	-	1121	88602696	-	Mhun_1420	-	multi-sensor signal transduction histidine kinase
1375	 42.22	0	1636123..1637889	-	588	88602697	-	Mhun_1421	-	putative PAS/PAC sensor protein
1376	 45.44	0	1638059..1640173	+	704	88602698	-	Mhun_1422	-	methyl-accepting chemotaxis sensory transducer
1377	 47.19	0	1640195..1640764	+	189	88602699	-	Mhun_1423	-	CheW protein
1378	 43.94	0	1641035..1641628	-	197	88602700	-	Mhun_1424	-	hypothetical protein
1379	 47.87	0	1642080..1643324	+	414	88602701	-	Mhun_1425	-	S-layer-like domain-containing protein
1380	 46.07	0	1643327..1644535	+	402	88602702	-	Mhun_1426	-	hypothetical protein
1381	 49.59	0	1644535..1645260	+	241	88602703	-	Mhun_1427	-	ABC transporter related
1382	 42.98	0	1645246..1646811	-	521	88602704	-	Mhun_1428	-	hypothetical protein
1383	 42.11	0	1646808..1648505	-	565	88602705	-	Mhun_1429	-	hypothetical protein
1384	 43.81	0	1648559..1649617	-	352	88602706	-	Mhun_1430	-	hypothetical protein
1385	 48.23	0	1649640..1651787	+	715	88602707	-	Mhun_1431	-	polyphosphate kinase
1386	 44.79	0	1651812..1652291	+	159	88602708	-	Mhun_1432	-	hypothetical protein
1387	 45.33	0	1652472..1655396	+	974	88602709	-	Mhun_1433	-	multi-sensor signal transduction histidine kinase
1388	 47.78	0	1655469..1656188	+	239	88602710	-	Mhun_1434	-	putative PAS/PAC sensor protein
1389	 47.82	0	1656268..1657806	-	512	88602711	-	Mhun_1435	-	periplasmic sensor signal transduction histidine kinase
1390	 53.59	+1	1657864..1658490	-	208	88602712	-	Mhun_1436	-	lysine exporter protein LysE/YggA
1391	 47.90	0	1658736..1659140	+	134	88602713	-	Mhun_1437	-	ribonuclease H
1392	 47.88	0	1659193..1660374	+	393	88602714	-	Mhun_1438	-	putative PAS/PAC sensor protein
1393	 41.32	0	1660387..1660749	+	120	88602715	-	Mhun_1439	-	response regulator receiver domain-containing protein
1394	 48.05	0	1660900..1662333	+	477	88602716	-	Mhun_1440	-	putative PAS/PAC sensor protein
1395	 49.77	0	1662336..1662992	+	218	88602717	-	Mhun_1441	-	hypothetical protein
1396	 43.82	0	1662993..1665338	-	781	88602718	-	Mhun_1442	-	multi-sensor signal transduction histidine kinase
1397	 45.39	0	1665505..1665927	+	140	88602719	-	Mhun_1443	-	hypothetical protein
1398	 46.67	0	1665931..1666155	-	74	88602720	-	Mhun_1444	-	rubredoxin-type Fe(Cys)4 protein
1399	 48.15	0	1666528..1666824	+	98	88602721	-	Mhun_1446	-	hypothetical protein
1400	 51.70	+1	1666826..1668682	-	618	88602722	-	Mhun_1447	-	PT repeat-containing protein
1401	 48.45	0	1668861..1669376	+	171	88602723	-	Mhun_1448	-	dual specificity protein phosphatase
1402	 49.34	0	1669412..1672615	-	1067	88602724	-	Mhun_1449	-	tetratricopeptide TPR_2
1403	 45.03	0	1672996..1673448	-	150	88602725	-	Mhun_1450	-	GCN5-related N-acetyltransferase
1404	 46.71	0	1673526..1674011	+	161	88602726	-	Mhun_1451	-	MarR family transcriptional regulator
1405	 45.71	0	1674091..1674591	+	166	88602727	-	Mhun_1452	-	GCN5-related N-acetyltransferase
1406	 40.14	-1	1674933..1675079	-	48	88602728	-	Mhun_1453	-	2-oxoisovalerate dehydrogenase, E1 component beta subunit
1407	 34.29	-2	1675693..1676112	-	139	88602729	-	Mhun_1454	-	PilT protein-like
1408	 33.80	-2	1676096..1676308	-	70	88602730	-	Mhun_1455	-	hypothetical protein
1409	 46.67	0	1676746..1678530	+	594	88602731	-	Mhun_1456	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1410	 49.51	0	1678540..1679052	+	170	88602732	-	Mhun_1457	-	hypothetical protein
1411	 44.00	0	1679062..1679361	+	99	88602733	-	Mhun_1458	-	hypothetical protein
1412	 50.11	0	1679388..1680728	+	446	88602734	-	Mhun_1459	-	aminotransferase, class I and II
1413	 52.17	+1	1681545..1682744	+	399	88602735	-	Mhun_1460	-	aminotransferase, class I and II
1414	 48.38	0	1682783..1683367	+	194	88602736	-	Mhun_1461	-	tetratricopeptide TPR_2
1415	 51.26	+1	1683394..1684464	-	356	88602737	-	Mhun_1462	-	hypothetical protein
1416	 51.02	+1	1684458..1686272	-	604	88602738	-	Mhun_1463	-	hypothetical protein
1417	 50.23	0	1686355..1687236	+	293	88602739	-	Mhun_1464	-	ABC transporter related
1418	 52.63	+1	1687238..1688284	-	348	88602740	-	Mhun_1465	-	phosphofructokinase, pyrophosphate dependent
1419	 49.61	0	1688277..1689185	-	302	88602741	-	Mhun_1466	-	aldolase
1420	 45.68	0	1689268..1689510	-	80	88602742	-	Mhun_1467	-	hypothetical protein
1421	 50.17	0	1689568..1689870	-	100	88602743	-	Mhun_1468	-	hypothetical protein
1422	 49.86	0	1689938..1691044	-	368	88602744	-	Mhun_1469	-	DNA-directed DNA polymerase
1423	 45.10	0	1691493..1691849	+	118	88602745	-	Mhun_1470	-	hypothetical protein
1424	 49.76	0	1691900..1693963	+	687	88602746	-	Mhun_1471	-	CoA-binding
1425	 44.70	0	1693970..1694620	-	216	88602747	-	Mhun_1472	-	response regulator receiver domain-containing protein
1426	 37.78	-1	1694796..1695020	-	74	88602748	-	Mhun_1473	-	hypothetical protein
1427	 46.61	0	1695017..1695679	-	220	88602749	-	Mhun_1474	-	hypothetical protein
1428	 49.05	0	1695727..1696407	+	226	88602750	-	Mhun_1475	-	HhH-GPD
1429	 47.32	0	1696432..1697382	+	316	88602751	-	Mhun_1476	-	hypothetical protein
1430	 44.98	0	1697370..1698236	-	288	88602752	-	Mhun_1477	-	cobalt transport protein
1431	 47.48	0	1698233..1699066	-	277	88602753	-	Mhun_1478	-	cobalt transporter ATP-binding subunit
1432	 45.61	0	1699221..1699562	-	113	88602754	-	Mhun_1479	-	cobalt transport protein CbiN
1433	 48.44	0	1699559..1700200	-	213	88602755	-	Mhun_1480	-	cobalt transport protein CbiM
1434	 46.31	0	1700309..1704586	-	1425	88602756	-	Mhun_1481	-	multi-sensor signal transduction histidine kinase
1435	 52.30	+1	1704698..1706110	+	470	88602757	-	Mhun_1482	-	hypothetical protein
1436	 49.25	0	1706107..1706772	+	221	88602758	-	Mhun_1483	-	TPR repeat-containing protein
1437	 50.09	0	1706773..1707948	-	391	88602759	-	Mhun_1484	-	peptidase M20
1438	 44.05	0	1707959..1708462	-	167	88602760	-	Mhun_1485	-	hypothetical protein
1439	 50.28	0	1708505..1709383	-	292	88602761	-	Mhun_1486	-	radical SAM family protein
1440	 48.24	0	1709370..1709993	-	207	88602762	-	Mhun_1487	-	ribosomal RNA methyltransferase RrmJ/FtsJ
1441	 46.51	0	1710085..1710828	+	247	88602763	-	Mhun_1488	-	DNA polymerase sliding clamp
1442	 52.38	+1	1710833..1711987	+	384	88602764	-	Mhun_1489	-	DNA primase large subunit
1443	 49.18	0	1712171..1712719	+	182	88602765	-	Mhun_1490	-	hypothetical protein
1444	 39.49	-1	1712732..1712926	+	64	88602766	-	Mhun_1491	-	30S ribosomal protein S17e
1445	 49.09	0	1712932..1713807	+	291	88602767	-	Mhun_1492	-	dihydrodipicolinate synthase
1446	 51.11	+1	1713800..1714564	+	254	88602768	-	Mhun_1493	-	dihydrodipicolinate reductase
1447	 43.68	0	1714616..1714789	+	57	88602769	-	Mhun_1494	-	4Fe-4S ferredoxin, iron-sulfur binding
1448	 52.02	+1	1714965..1715981	+	338	88602770	-	Mhun_1495	-	aspartate-semialdehyde dehydrogenase
1449	 42.11	0	1715987..1716271	+	94	88602771	-	Mhun_1496	-	chromatin protein
1450	 47.49	0	1716332..1716769	+	145	88602772	-	Mhun_1497	-	hypothetical protein
1451	 49.09	0	1716788..1717447	+	219	88602773	-	Mhun_1498	-	multiple antibiotic resistance (MarC)-related proteins
1452	 46.05	0	1717468..1717695	-	75	88602774	-	Mhun_1499	-	hydrogenase assembly chaperone hypC/hupF
1453	 48.20	0	1717779..1718780	+	333	88602775	-	Mhun_1500	-	hypothetical protein
1454	 47.22	0	1718792..1719259	-	155	88602776	-	Mhun_1501	-	FHA domain-containing protein
1455	 47.44	0	1719309..1721102	-	597	88602777	-	Mhun_1502	-	ATPase AAA-2
1456	 47.05	0	1721288..1723876	-	862	88602778	-	Mhun_1503	-	TPR repeat-containing serine/threonin protein kinase
1457	 45.44	0	1723915..1725525	-	536	88602779	-	Mhun_1504	-	hypothetical protein
1458	 47.15	0	1725525..1726313	-	262	88602780	-	Mhun_1505	-	protein serine/threonine phosphatases
1459	 47.33	0	1726456..1726755	+	99	88602781	-	Mhun_1506	-	hypothetical protein
1460	 50.99	+1	1726857..1727411	+	184	88602782	-	Mhun_1507	-	hypothetical protein
1461	 51.50	+1	1727408..1728007	+	199	88602783	-	Mhun_1508	-	metal dependent phosphohydrolase
1462	 51.66	+1	1728337..1729362	+	341	88602784	-	Mhun_1509	-	tetratricopeptide TPR_2
1463	 52.35	+1	1731871..1735698	-	1275	88602785	-	Mhun_1511	-	hypothetical protein
1464	 28.69	-2	1735874..1739236	-	1120	88602786	-	Mhun_1512	-	hypothetical protein
1465	 34.26	-2	1739241..1741175	-	644	88602787	-	Mhun_1513	-	hypothetical protein
1466	 34.13	-2	1741178..1744426	-	1082	88602788	-	Mhun_1514	-	helicase-like
1467	 40.64	-1	1744463..1744900	-	145	88602789	-	Mhun_1515	-	hypothetical protein
1468	 32.84	-2	1744995..1745600	-	201	88602790	-	Mhun_1516	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.