IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1328	 51.46	+1	1570727..1571035	+	102	88602650	-	Mhun_1369	-	hypothetical protein
1329	 49.14	0	1571103..1571507	+	134	88602651	-	Mhun_1370	-	hypothetical protein
1330	 46.41	0	1571891..1572127	+	78	88602652	-	Mhun_1371	-	hypothetical protein
1331	 52.26	+1	1572730..1572972	+	80	88602653	-	Mhun_1372	-	hypothetical protein
1332	 53.21	+1	1572972..1573454	+	160	88602654	-	Mhun_1373	-	hypothetical protein
1333	 47.28	0	1573458..1573751	-	97	88602655	-	Mhun_1374	-	hypothetical protein
1334	 49.11	0	1573758..1574657	-	299	88602656	-	Mhun_1375	-	CRISPR-associated Cas1 family protein
1335	 43.67	0	1574654..1575340	-	228	88602657	-	Mhun_1376	-	CRISPR-associated Cse3 family protein
1336	 47.35	0	1575343..1576020	-	225	88602658	-	Mhun_1377	-	CRISPR-associated Cas5e family protein
1337	 42.99	0	1576077..1577225	-	382	88602659	-	Mhun_1378	-	CRISPR-associated Cse4 family protein
1338	 40.95	0	1577218..1577742	-	174	88602660	-	Mhun_1379	-	hypothetical protein
1339	 39.15	-1	1577739..1579337	-	532	88602661	-	Mhun_1380	-	hypothetical protein
1340	 35.12	-2	1583020..1583580	+	186	88602662	-	Mhun_1383	-	hypothetical protein
1341	 38.94	-1	1584064..1584384	-	106	88602663	-	Mhun_1384	-	hypothetical protein
1342	 45.63	0	1584548..1584856	+	102	88602664	-	Mhun_1385	-	hypothetical protein
1343	 45.98	0	1585235..1585495	+	86	88602665	-	Mhun_1386	-	hypothetical protein
1344	 33.09	-2	1585577..1585987	-	136	88602666	-	Mhun_1387	-	PilT protein-like
1345	 35.00	-2	1585991..1586230	-	79	88602667	-	Mhun_1388	-	transcriptional regulator AbrB
1346	 42.43	0	1586616..1587791	-	391	88602668	-	Mhun_1389	-	hypothetical protein
1347	 38.14	-1	1587788..1588141	-	117	88602669	-	Mhun_1390	-	hypothetical protein
1348	 43.11	0	1588360..1589730	-	456	88602670	-	Mhun_1391	-	hypothetical protein
1349	 52.18	+1	1590064..1590567	+	167	88602671	-	Mhun_1392	-	hypothetical protein
1350	 46.74	0	1590591..1591142	+	183	88602672	-	Mhun_1393	-	hypothetical protein
1351	 50.91	+1	1592044..1592373	+	109	88602673	-	Mhun_1394	-	hypothetical protein
1352	 46.97	0	1592370..1592633	+	87	88602674	-	Mhun_1395	-	hypothetical protein
1353	 49.83	0	1592643..1595885	+	1080	88602675	-	Mhun_1396	-	hypothetical protein
1354	 52.80	+1	1595875..1596213	+	112	88602676	-	Mhun_1397	-	hypothetical protein
1355	 43.33	0	1596267..1597136	+	289	88602677	-	Mhun_1398	-	putative transposase
1356	 43.54	0	1597344..1598225	+	293	88602678	-	Mhun_1399	-	putative transposase
1357	 43.71	0	1598434..1599339	+	301	88602679	-	Mhun_1400	-	putative transposase
1358	 46.02	0	1599604..1600194	+	196	88602680	-	Mhun_1401	-	ATPase
1359	 32.89	-2	1600929..1601378	-	149	88602681	-	Mhun_1403	-	hypothetical protein
1360	 42.11	0	1601375..1601773	-	132	88602682	-	Mhun_1404	-	DNA polymerase, beta-like region
1361	 35.59	-2	1602372..1602725	-	117	88602683	-	Mhun_1405	-	hypothetical protein
1362	 46.98	0	1602780..1606055	-	1091	88602684	-	Mhun_1406	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1363	 40.02	-1	1606272..1607483	+	403	88602685	-	Mhun_1407	-	hypothetical protein
1364	 41.09	0	1607930..1608703	-	257	88602686	-	Mhun_1409	-	4Fe-4S ferredoxin, iron-sulfur binding
1365	 43.24	0	1609293..1610231	+	312	88602687	-	Mhun_1411	-	hypothetical protein
1366	 45.90	0	1610427..1612853	+	808	88602688	-	Mhun_1412	-	methyl-accepting chemotaxis sensory transducer
1367	 43.90	0	1612984..1616739	+	1251	88602689	-	Mhun_1413	-	putative PAS/PAC sensor protein
1368	 45.03	0	1617034..1618674	+	546	88602690	-	Mhun_1414	-	signal transduction histidine kinase regulating citrate/malate metabolism
1369	 46.33	0	1618669..1624887	-	2072	88602691	-	Mhun_1415	-	multi-sensor signal transduction histidine kinase
1370	 46.00	0	1625168..1626343	-	391	88602692	-	Mhun_1416	-	uracil-xanthine permease
1371	 47.03	0	1626497..1629664	-	1055	88602693	-	Mhun_1417	-	multi-sensor signal transduction histidine kinase
1372	 42.17	0	1629766..1630116	-	116	88602694	-	Mhun_1418	-	hypothetical protein
1373	 45.89	0	1630363..1632672	-	769	88602695	-	Mhun_1419	-	multi-sensor signal transduction histidine kinase
1374	 46.17	0	1632669..1636034	-	1121	88602696	-	Mhun_1420	-	multi-sensor signal transduction histidine kinase
1375	 42.22	0	1636123..1637889	-	588	88602697	-	Mhun_1421	-	putative PAS/PAC sensor protein
1376	 45.44	0	1638059..1640173	+	704	88602698	-	Mhun_1422	-	methyl-accepting chemotaxis sensory transducer
1377	 47.19	0	1640195..1640764	+	189	88602699	-	Mhun_1423	-	CheW protein
1378	 43.94	0	1641035..1641628	-	197	88602700	-	Mhun_1424	-	hypothetical protein
1379	 47.87	0	1642080..1643324	+	414	88602701	-	Mhun_1425	-	S-layer-like domain-containing protein
1380	 46.07	0	1643327..1644535	+	402	88602702	-	Mhun_1426	-	hypothetical protein
1381	 49.59	0	1644535..1645260	+	241	88602703	-	Mhun_1427	-	ABC transporter related
1382	 42.98	0	1645246..1646811	-	521	88602704	-	Mhun_1428	-	hypothetical protein
1383	 42.11	0	1646808..1648505	-	565	88602705	-	Mhun_1429	-	hypothetical protein
1384	 43.81	0	1648559..1649617	-	352	88602706	-	Mhun_1430	-	hypothetical protein
1385	 48.23	0	1649640..1651787	+	715	88602707	-	Mhun_1431	-	polyphosphate kinase
1386	 44.79	0	1651812..1652291	+	159	88602708	-	Mhun_1432	-	hypothetical protein
1387	 45.33	0	1652472..1655396	+	974	88602709	-	Mhun_1433	-	multi-sensor signal transduction histidine kinase
1388	 47.78	0	1655469..1656188	+	239	88602710	-	Mhun_1434	-	putative PAS/PAC sensor protein
1389	 47.82	0	1656268..1657806	-	512	88602711	-	Mhun_1435	-	periplasmic sensor signal transduction histidine kinase
1390	 53.59	+1	1657864..1658490	-	208	88602712	-	Mhun_1436	-	lysine exporter protein LysE/YggA
1391	 47.90	0	1658736..1659140	+	134	88602713	-	Mhun_1437	-	ribonuclease H
1392	 47.88	0	1659193..1660374	+	393	88602714	-	Mhun_1438	-	putative PAS/PAC sensor protein
1393	 41.32	0	1660387..1660749	+	120	88602715	-	Mhun_1439	-	response regulator receiver domain-containing protein
1394	 48.05	0	1660900..1662333	+	477	88602716	-	Mhun_1440	-	putative PAS/PAC sensor protein
1395	 49.77	0	1662336..1662992	+	218	88602717	-	Mhun_1441	-	hypothetical protein
1396	 43.82	0	1662993..1665338	-	781	88602718	-	Mhun_1442	-	multi-sensor signal transduction histidine kinase
1397	 45.39	0	1665505..1665927	+	140	88602719	-	Mhun_1443	-	hypothetical protein
1398	 46.67	0	1665931..1666155	-	74	88602720	-	Mhun_1444	-	rubredoxin-type Fe(Cys)4 protein
1399	 48.15	0	1666528..1666824	+	98	88602721	-	Mhun_1446	-	hypothetical protein
1400	 51.70	+1	1666826..1668682	-	618	88602722	-	Mhun_1447	-	PT repeat-containing protein
1401	 48.45	0	1668861..1669376	+	171	88602723	-	Mhun_1448	-	dual specificity protein phosphatase
1402	 49.34	0	1669412..1672615	-	1067	88602724	-	Mhun_1449	-	tetratricopeptide TPR_2
1403	 45.03	0	1672996..1673448	-	150	88602725	-	Mhun_1450	-	GCN5-related N-acetyltransferase
1404	 46.71	0	1673526..1674011	+	161	88602726	-	Mhun_1451	-	MarR family transcriptional regulator
1405	 45.71	0	1674091..1674591	+	166	88602727	-	Mhun_1452	-	GCN5-related N-acetyltransferase
1406	 40.14	-1	1674933..1675079	-	48	88602728	-	Mhun_1453	-	2-oxoisovalerate dehydrogenase, E1 component beta subunit
1407	 34.29	-2	1675693..1676112	-	139	88602729	-	Mhun_1454	-	PilT protein-like
1408	 33.80	-2	1676096..1676308	-	70	88602730	-	Mhun_1455	-	hypothetical protein
1409	 46.67	0	1676746..1678530	+	594	88602731	-	Mhun_1456	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1410	 49.51	0	1678540..1679052	+	170	88602732	-	Mhun_1457	-	hypothetical protein
1411	 44.00	0	1679062..1679361	+	99	88602733	-	Mhun_1458	-	hypothetical protein
1412	 50.11	0	1679388..1680728	+	446	88602734	-	Mhun_1459	-	aminotransferase, class I and II
1413	 52.17	+1	1681545..1682744	+	399	88602735	-	Mhun_1460	-	aminotransferase, class I and II
1414	 48.38	0	1682783..1683367	+	194	88602736	-	Mhun_1461	-	tetratricopeptide TPR_2
1415	 51.26	+1	1683394..1684464	-	356	88602737	-	Mhun_1462	-	hypothetical protein
1416	 51.02	+1	1684458..1686272	-	604	88602738	-	Mhun_1463	-	hypothetical protein
1417	 50.23	0	1686355..1687236	+	293	88602739	-	Mhun_1464	-	ABC transporter related
1418	 52.63	+1	1687238..1688284	-	348	88602740	-	Mhun_1465	-	phosphofructokinase, pyrophosphate dependent
1419	 49.61	0	1688277..1689185	-	302	88602741	-	Mhun_1466	-	aldolase
1420	 45.68	0	1689268..1689510	-	80	88602742	-	Mhun_1467	-	hypothetical protein
1421	 50.17	0	1689568..1689870	-	100	88602743	-	Mhun_1468	-	hypothetical protein
1422	 49.86	0	1689938..1691044	-	368	88602744	-	Mhun_1469	-	DNA-directed DNA polymerase
1423	 45.10	0	1691493..1691849	+	118	88602745	-	Mhun_1470	-	hypothetical protein
1424	 49.76	0	1691900..1693963	+	687	88602746	-	Mhun_1471	-	CoA-binding
1425	 44.70	0	1693970..1694620	-	216	88602747	-	Mhun_1472	-	response regulator receiver domain-containing protein
1426	 37.78	-1	1694796..1695020	-	74	88602748	-	Mhun_1473	-	hypothetical protein
1427	 46.61	0	1695017..1695679	-	220	88602749	-	Mhun_1474	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.