IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1274	 45.13	0	1500073..1501098	+	341	88602596	-	Mhun_1315	-	O-methyltransferase family protein
1275	 38.53	-1	1501211..1502383	+	390	88602597	-	Mhun_1316	-	periplasmic binding protein
1276	 43.45	0	1502395..1503234	+	279	88602598	-	Mhun_1317	-	ribosomal RNA adenine dimethylase
1277	 45.52	0	1503279..1504361	+	360	88602599	-	Mhun_1318	-	transport system permease protein
1278	 46.59	0	1504358..1505134	+	258	88602600	-	Mhun_1319	-	ABC transporter related
1279	 37.79	-1	1505166..1506041	-	291	88602601	-	Mhun_1320	-	putative methyltransferase
1280	 40.69	-1	1506179..1507279	+	366	88602602	-	Mhun_1321	-	periplasmic binding protein
1281	 42.57	0	1507570..1508511	+	313	88602603	-	Mhun_1322	-	aminoglycoside phosphotransferase
1282	 46.27	0	1508552..1509301	-	249	88602604	-	Mhun_1323	-	hypothetical protein
1283	 43.88	0	1509693..1510109	+	138	88602605	-	Mhun_1324	-	iron dependent repressor
1284	 45.26	0	1510306..1514370	+	1354	88602606	-	Mhun_1325	-	CoA enzyme activase
1285	 44.29	0	1514393..1514812	+	139	88602607	-	Mhun_1326	-	hypothetical protein
1286	 39.47	-1	1515013..1515501	+	162	88602608	-	Mhun_1327	-	PadR-like family transcriptional regulator
1287	 44.01	0	1515552..1516094	+	180	88602609	-	Mhun_1328	-	hypothetical protein
1288	 44.90	0	1516108..1516920	+	270	88602610	-	Mhun_1329	-	formylmethanofuran dehydrogenase, subunit E region
1289	 42.07	0	1516936..1517553	+	205	88602611	-	Mhun_1330	-	UbiE/COQ5 methyltransferase
1290	 41.74	0	1517719..1518765	-	348	88602612	-	Mhun_1331	-	ABC transporter related
1291	 44.40	0	1518775..1519569	-	264	88602613	-	Mhun_1332	-	NifC-like ABC-type porter
1292	 39.93	-1	1519566..1520111	-	181	88602614	-	Mhun_1333	-	hypothetical protein
1293	 42.20	0	1520159..1521004	-	281	88602615	-	Mhun_1334	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1294	 43.25	0	1521479..1522951	-	490	88602616	-	Mhun_1335	-	RNA-directed DNA polymerase
1295	 43.43	0	1523695..1524714	-	339	88602617	-	Mhun_1336	-	O-methyltransferase family protein
1296	 51.21	+1	1524718..1525752	-	344	88602618	-	Mhun_1337	-	hypothetical protein
1297	 41.08	0	1525995..1527272	+	425	88602619	-	Mhun_1338	-	ATPase
1298	 44.50	0	1527317..1527952	-	211	88602620	-	Mhun_1339	-	hypothetical protein
1299	 47.21	0	1528043..1528669	-	208	88602621	-	Mhun_1340	-	ThiJ/PfpI
1300	 49.38	0	1529029..1529271	+	80	88602622	-	Mhun_1341	-	hypothetical protein
1301	 46.85	0	1529279..1529500	+	73	88602623	-	Mhun_1342	-	hypothetical protein
1302	 48.47	0	1529511..1531499	+	662	88602624	-	Mhun_1343	-	ferrous iron transport protein B
1303	 49.77	0	1531502..1531945	+	147	88602625	-	Mhun_1344	-	hypothetical protein
1304	 44.72	0	1531938..1532297	+	119	88602626	-	Mhun_1345	-	hypothetical protein
1305	 46.29	0	1532290..1533462	+	390	88602627	-	Mhun_1346	-	histidine kinase
1306	 46.39	0	1534621..1535049	+	142	88602628	-	Mhun_1347	-	MarR family transcriptional regulator
1307	 49.12	0	1535066..1536997	+	643	88602629	-	Mhun_1348	-	heavy metal translocating P-type ATPase
1308	 46.25	0	1537204..1540539	+	1111	88602630	-	Mhun_1349	-	multi-sensor signal transduction histidine kinase
1309	 44.49	0	1540697..1545973	+	1758	88602631	-	Mhun_1350	-	multi-sensor signal transduction histidine kinase
1310	 43.14	0	1546054..1547613	+	519	88602632	-	Mhun_1351	-	hypothetical protein
1311	 49.39	0	1548268..1550466	-	732	88602633	-	Mhun_1352	-	multi-sensor signal transduction histidine kinase
1312	 47.88	0	1550612..1553848	-	1078	88602634	-	Mhun_1353	-	multi-sensor signal transduction histidine kinase
1313	 46.83	0	1553845..1557675	-	1276	88602635	-	Mhun_1354	-	multi-sensor signal transduction histidine kinase
1314	 43.11	0	1557950..1558174	-	74	88602636	-	Mhun_1355	-	hypothetical protein
1315	 47.74	0	1558336..1559154	-	272	88602637	-	Mhun_1356	-	methyl-accepting chemotaxis sensory transducer
1316	 50.66	0	1560131..1561711	+	526	88602638	-	Mhun_1357	-	UvrD/REP helicase
1317	 48.97	0	1561687..1562850	+	387	88602639	-	Mhun_1358	-	DNA helicase II
1318	 38.10	-1	1562866..1563222	+	118	88602640	-	Mhun_1359	-	hypothetical protein
1319	 38.10	-1	1563213..1563443	+	76	88602641	-	Mhun_1360	-	hypothetical protein
1320	 34.04	-2	1563436..1563861	+	141	88602642	-	Mhun_1361	-	hypothetical protein
1321	 47.50	0	1564062..1564421	+	119	88602643	-	Mhun_1362	-	hypothetical protein
1322	 40.93	0	1564827..1565669	-	280	88602644	-	Mhun_1363	-	hypothetical protein
1323	 53.04	+1	1566559..1567512	-	317	88602645	-	Mhun_1364	-	hypothetical protein
1324	 39.63	-1	1568118..1568546	-	142	88602646	-	Mhun_1365	-	hypothetical protein
1325	 51.11	+1	1569377..1569691	+	104	88602647	-	Mhun_1366	-	hypothetical protein
1326	 47.07	0	1569756..1570301	+	181	88602648	-	Mhun_1367	-	hypothetical protein
1327	 54.47	+1	1570369..1570614	+	81	88602649	-	Mhun_1368	-	hypothetical protein
1328	 51.46	+1	1570727..1571035	+	102	88602650	-	Mhun_1369	-	hypothetical protein
1329	 49.14	0	1571103..1571507	+	134	88602651	-	Mhun_1370	-	hypothetical protein
1330	 46.41	0	1571891..1572127	+	78	88602652	-	Mhun_1371	-	hypothetical protein
1331	 52.26	+1	1572730..1572972	+	80	88602653	-	Mhun_1372	-	hypothetical protein
1332	 53.21	+1	1572972..1573454	+	160	88602654	-	Mhun_1373	-	hypothetical protein
1333	 47.28	0	1573458..1573751	-	97	88602655	-	Mhun_1374	-	hypothetical protein
1334	 49.11	0	1573758..1574657	-	299	88602656	-	Mhun_1375	-	CRISPR-associated Cas1 family protein
1335	 43.67	0	1574654..1575340	-	228	88602657	-	Mhun_1376	-	CRISPR-associated Cse3 family protein
1336	 47.35	0	1575343..1576020	-	225	88602658	-	Mhun_1377	-	CRISPR-associated Cas5e family protein
1337	 42.99	0	1576077..1577225	-	382	88602659	-	Mhun_1378	-	CRISPR-associated Cse4 family protein
1338	 40.95	0	1577218..1577742	-	174	88602660	-	Mhun_1379	-	hypothetical protein
1339	 39.15	-1	1577739..1579337	-	532	88602661	-	Mhun_1380	-	hypothetical protein
1340	 35.12	-2	1583020..1583580	+	186	88602662	-	Mhun_1383	-	hypothetical protein
1341	 38.94	-1	1584064..1584384	-	106	88602663	-	Mhun_1384	-	hypothetical protein
1342	 45.63	0	1584548..1584856	+	102	88602664	-	Mhun_1385	-	hypothetical protein
1343	 45.98	0	1585235..1585495	+	86	88602665	-	Mhun_1386	-	hypothetical protein
1344	 33.09	-2	1585577..1585987	-	136	88602666	-	Mhun_1387	-	PilT protein-like
1345	 35.00	-2	1585991..1586230	-	79	88602667	-	Mhun_1388	-	transcriptional regulator AbrB
1346	 42.43	0	1586616..1587791	-	391	88602668	-	Mhun_1389	-	hypothetical protein
1347	 38.14	-1	1587788..1588141	-	117	88602669	-	Mhun_1390	-	hypothetical protein
1348	 43.11	0	1588360..1589730	-	456	88602670	-	Mhun_1391	-	hypothetical protein
1349	 52.18	+1	1590064..1590567	+	167	88602671	-	Mhun_1392	-	hypothetical protein
1350	 46.74	0	1590591..1591142	+	183	88602672	-	Mhun_1393	-	hypothetical protein
1351	 50.91	+1	1592044..1592373	+	109	88602673	-	Mhun_1394	-	hypothetical protein
1352	 46.97	0	1592370..1592633	+	87	88602674	-	Mhun_1395	-	hypothetical protein
1353	 49.83	0	1592643..1595885	+	1080	88602675	-	Mhun_1396	-	hypothetical protein
1354	 52.80	+1	1595875..1596213	+	112	88602676	-	Mhun_1397	-	hypothetical protein
1355	 43.33	0	1596267..1597136	+	289	88602677	-	Mhun_1398	-	putative transposase
1356	 43.54	0	1597344..1598225	+	293	88602678	-	Mhun_1399	-	putative transposase
1357	 43.71	0	1598434..1599339	+	301	88602679	-	Mhun_1400	-	putative transposase
1358	 46.02	0	1599604..1600194	+	196	88602680	-	Mhun_1401	-	ATPase
1359	 32.89	-2	1600929..1601378	-	149	88602681	-	Mhun_1403	-	hypothetical protein
1360	 42.11	0	1601375..1601773	-	132	88602682	-	Mhun_1404	-	DNA polymerase, beta-like region
1361	 35.59	-2	1602372..1602725	-	117	88602683	-	Mhun_1405	-	hypothetical protein
1362	 46.98	0	1602780..1606055	-	1091	88602684	-	Mhun_1406	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1363	 40.02	-1	1606272..1607483	+	403	88602685	-	Mhun_1407	-	hypothetical protein
1364	 41.09	0	1607930..1608703	-	257	88602686	-	Mhun_1409	-	4Fe-4S ferredoxin, iron-sulfur binding
1365	 43.24	0	1609293..1610231	+	312	88602687	-	Mhun_1411	-	hypothetical protein
1366	 45.90	0	1610427..1612853	+	808	88602688	-	Mhun_1412	-	methyl-accepting chemotaxis sensory transducer
1367	 43.90	0	1612984..1616739	+	1251	88602689	-	Mhun_1413	-	putative PAS/PAC sensor protein
1368	 45.03	0	1617034..1618674	+	546	88602690	-	Mhun_1414	-	signal transduction histidine kinase regulating citrate/malate metabolism
1369	 46.33	0	1618669..1624887	-	2072	88602691	-	Mhun_1415	-	multi-sensor signal transduction histidine kinase
1370	 46.00	0	1625168..1626343	-	391	88602692	-	Mhun_1416	-	uracil-xanthine permease
1371	 47.03	0	1626497..1629664	-	1055	88602693	-	Mhun_1417	-	multi-sensor signal transduction histidine kinase
1372	 42.17	0	1629766..1630116	-	116	88602694	-	Mhun_1418	-	hypothetical protein
1373	 45.89	0	1630363..1632672	-	769	88602695	-	Mhun_1419	-	multi-sensor signal transduction histidine kinase
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.