IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1238	 47.62	0	1449118..1449936	+	272	88602560	-	Mhun_1276	-	cobyrinic acid a,c-diamide synthase
1239	 42.20	0	1450028..1450309	+	93	88602561	-	Mhun_1277	-	prevent-host-death protein
1240	 41.20	0	1450217..1450699	-	160	88602562	-	Mhun_1278	-	hypothetical protein
1241	 50.18	0	1450776..1451624	-	282	88602563	-	Mhun_1279	-	Pirin-like
1242	 44.02	0	1451736..1452446	-	236	88602564	-	Mhun_1280	-	4Fe-4S ferredoxin, iron-sulfur binding
1243	 43.89	0	1452629..1453291	+	220	88602565	-	Mhun_1281	-	carbonate dehydratase
1244	 44.58	0	1453357..1453596	-	79	88602566	-	Mhun_1282	-	hypothetical protein
1245	 41.67	0	1453719..1453946	-	75	88602567	-	Mhun_1283	-	hypothetical protein
1246	 44.92	0	1453943..1454434	-	163	88602568	-	Mhun_1284	-	hypothetical protein
1247	 45.85	0	1454680..1455294	+	204	88602569	-	Mhun_1285	-	GTPase EngC
1248	 42.78	0	1455658..1456356	+	232	88602570	-	Mhun_1286	-	hypothetical protein
1249	 42.06	0	1456363..1459170	-	935	88602571	-	Mhun_1287	-	multi-sensor signal transduction histidine kinase
1250	 44.52	0	1459427..1459846	+	139	88602572	-	Mhun_1288	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1251	 47.50	0	1460122..1462719	-	865	88602573	-	Mhun_1289	-	ATPase AAA-2
1252	 43.35	0	1463147..1463785	+	212	88602574	-	Mhun_1290	-	response regulator receiver domain-containing protein
1253	 49.19	0	1463843..1470904	-	2353	88602575	-	Mhun_1291	-	mucin 2, intestinal/tracheal
1254	 41.07	0	1471242..1472120	+	292	88602576	-	Mhun_1292	-	hypothetical protein
1255	 40.86	0	1472242..1473078	+	278	88602577	-	Mhun_1293	-	hypothetical protein
1256	 45.35	0	1473206..1474786	-	526	88602578	-	Mhun_1294	-	Signal transduction histidine kinase-like
1257	 47.66	0	1476293..1476655	-	120	88602579	-	Mhun_1296	-	hypothetical protein
1258	 34.03	-2	1478592..1481591	+	999	88602580	-	Mhun_1298	-	ATPase
1259	 42.01	0	1481596..1482909	+	437	88602581	-	Mhun_1299	-	McrBC 5-methylcytosine restriction system component-like
1260	 45.80	0	1482946..1483338	-	130	88602582	-	Mhun_1300	-	YjgF-like protein
1261	 46.64	0	1484368..1486404	-	678	88602583	-	Mhun_1301	-	peptidase S9, prolyl oligopeptidase active site region
1262	 44.54	0	1486500..1486847	-	115	88602584	-	Mhun_1302	-	hypothetical protein
1263	 46.93	0	1487002..1489701	-	899	88602585	-	Mhun_1303	-	hypothetical protein
1264	 43.19	0	1489810..1490529	+	239	88602586	-	Mhun_1304	-	hypothetical protein
1265	 41.16	0	1490646..1490939	+	97	88602587	-	Mhun_1305	-	hypothetical protein
1266	 48.92	0	1492038..1492916	-	292	88602588	-	Mhun_1307	-	heat shock protein HtpX
1267	 50.33	0	1493006..1493464	-	152	88602589	-	Mhun_1308	-	hypothetical protein
1268	 45.24	0	1493592..1495010	-	472	88602590	-	Mhun_1309	-	multi-sensor signal transduction histidine kinase
1269	 40.96	0	1495279..1495842	+	187	88602591	-	Mhun_1310	-	hypothetical protein
1270	 47.99	0	1495985..1496557	-	190	88602592	-	Mhun_1311	-	rubrerythrin
1271	 42.83	0	1496661..1497134	+	157	88602593	-	Mhun_1312	-	hypothetical protein
1272	 47.26	0	1497149..1497586	-	145	88602594	-	Mhun_1313	-	iron dependent repressor
1273	 42.17	0	1498914..1500056	+	380	88602595	-	Mhun_1314	-	periplasmic binding protein
1274	 45.13	0	1500073..1501098	+	341	88602596	-	Mhun_1315	-	O-methyltransferase family protein
1275	 38.53	-1	1501211..1502383	+	390	88602597	-	Mhun_1316	-	periplasmic binding protein
1276	 43.45	0	1502395..1503234	+	279	88602598	-	Mhun_1317	-	ribosomal RNA adenine dimethylase
1277	 45.52	0	1503279..1504361	+	360	88602599	-	Mhun_1318	-	transport system permease protein
1278	 46.59	0	1504358..1505134	+	258	88602600	-	Mhun_1319	-	ABC transporter related
1279	 37.79	-1	1505166..1506041	-	291	88602601	-	Mhun_1320	-	putative methyltransferase
1280	 40.69	-1	1506179..1507279	+	366	88602602	-	Mhun_1321	-	periplasmic binding protein
1281	 42.57	0	1507570..1508511	+	313	88602603	-	Mhun_1322	-	aminoglycoside phosphotransferase
1282	 46.27	0	1508552..1509301	-	249	88602604	-	Mhun_1323	-	hypothetical protein
1283	 43.88	0	1509693..1510109	+	138	88602605	-	Mhun_1324	-	iron dependent repressor
1284	 45.26	0	1510306..1514370	+	1354	88602606	-	Mhun_1325	-	CoA enzyme activase
1285	 44.29	0	1514393..1514812	+	139	88602607	-	Mhun_1326	-	hypothetical protein
1286	 39.47	-1	1515013..1515501	+	162	88602608	-	Mhun_1327	-	PadR-like family transcriptional regulator
1287	 44.01	0	1515552..1516094	+	180	88602609	-	Mhun_1328	-	hypothetical protein
1288	 44.90	0	1516108..1516920	+	270	88602610	-	Mhun_1329	-	formylmethanofuran dehydrogenase, subunit E region
1289	 42.07	0	1516936..1517553	+	205	88602611	-	Mhun_1330	-	UbiE/COQ5 methyltransferase
1290	 41.74	0	1517719..1518765	-	348	88602612	-	Mhun_1331	-	ABC transporter related
1291	 44.40	0	1518775..1519569	-	264	88602613	-	Mhun_1332	-	NifC-like ABC-type porter
1292	 39.93	-1	1519566..1520111	-	181	88602614	-	Mhun_1333	-	hypothetical protein
1293	 42.20	0	1520159..1521004	-	281	88602615	-	Mhun_1334	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1294	 43.25	0	1521479..1522951	-	490	88602616	-	Mhun_1335	-	RNA-directed DNA polymerase
1295	 43.43	0	1523695..1524714	-	339	88602617	-	Mhun_1336	-	O-methyltransferase family protein
1296	 51.21	+1	1524718..1525752	-	344	88602618	-	Mhun_1337	-	hypothetical protein
1297	 41.08	0	1525995..1527272	+	425	88602619	-	Mhun_1338	-	ATPase
1298	 44.50	0	1527317..1527952	-	211	88602620	-	Mhun_1339	-	hypothetical protein
1299	 47.21	0	1528043..1528669	-	208	88602621	-	Mhun_1340	-	ThiJ/PfpI
1300	 49.38	0	1529029..1529271	+	80	88602622	-	Mhun_1341	-	hypothetical protein
1301	 46.85	0	1529279..1529500	+	73	88602623	-	Mhun_1342	-	hypothetical protein
1302	 48.47	0	1529511..1531499	+	662	88602624	-	Mhun_1343	-	ferrous iron transport protein B
1303	 49.77	0	1531502..1531945	+	147	88602625	-	Mhun_1344	-	hypothetical protein
1304	 44.72	0	1531938..1532297	+	119	88602626	-	Mhun_1345	-	hypothetical protein
1305	 46.29	0	1532290..1533462	+	390	88602627	-	Mhun_1346	-	histidine kinase
1306	 46.39	0	1534621..1535049	+	142	88602628	-	Mhun_1347	-	MarR family transcriptional regulator
1307	 49.12	0	1535066..1536997	+	643	88602629	-	Mhun_1348	-	heavy metal translocating P-type ATPase
1308	 46.25	0	1537204..1540539	+	1111	88602630	-	Mhun_1349	-	multi-sensor signal transduction histidine kinase
1309	 44.49	0	1540697..1545973	+	1758	88602631	-	Mhun_1350	-	multi-sensor signal transduction histidine kinase
1310	 43.14	0	1546054..1547613	+	519	88602632	-	Mhun_1351	-	hypothetical protein
1311	 49.39	0	1548268..1550466	-	732	88602633	-	Mhun_1352	-	multi-sensor signal transduction histidine kinase
1312	 47.88	0	1550612..1553848	-	1078	88602634	-	Mhun_1353	-	multi-sensor signal transduction histidine kinase
1313	 46.83	0	1553845..1557675	-	1276	88602635	-	Mhun_1354	-	multi-sensor signal transduction histidine kinase
1314	 43.11	0	1557950..1558174	-	74	88602636	-	Mhun_1355	-	hypothetical protein
1315	 47.74	0	1558336..1559154	-	272	88602637	-	Mhun_1356	-	methyl-accepting chemotaxis sensory transducer
1316	 50.66	0	1560131..1561711	+	526	88602638	-	Mhun_1357	-	UvrD/REP helicase
1317	 48.97	0	1561687..1562850	+	387	88602639	-	Mhun_1358	-	DNA helicase II
1318	 38.10	-1	1562866..1563222	+	118	88602640	-	Mhun_1359	-	hypothetical protein
1319	 38.10	-1	1563213..1563443	+	76	88602641	-	Mhun_1360	-	hypothetical protein
1320	 34.04	-2	1563436..1563861	+	141	88602642	-	Mhun_1361	-	hypothetical protein
1321	 47.50	0	1564062..1564421	+	119	88602643	-	Mhun_1362	-	hypothetical protein
1322	 40.93	0	1564827..1565669	-	280	88602644	-	Mhun_1363	-	hypothetical protein
1323	 53.04	+1	1566559..1567512	-	317	88602645	-	Mhun_1364	-	hypothetical protein
1324	 39.63	-1	1568118..1568546	-	142	88602646	-	Mhun_1365	-	hypothetical protein
1325	 51.11	+1	1569377..1569691	+	104	88602647	-	Mhun_1366	-	hypothetical protein
1326	 47.07	0	1569756..1570301	+	181	88602648	-	Mhun_1367	-	hypothetical protein
1327	 54.47	+1	1570369..1570614	+	81	88602649	-	Mhun_1368	-	hypothetical protein
1328	 51.46	+1	1570727..1571035	+	102	88602650	-	Mhun_1369	-	hypothetical protein
1329	 49.14	0	1571103..1571507	+	134	88602651	-	Mhun_1370	-	hypothetical protein
1330	 46.41	0	1571891..1572127	+	78	88602652	-	Mhun_1371	-	hypothetical protein
1331	 52.26	+1	1572730..1572972	+	80	88602653	-	Mhun_1372	-	hypothetical protein
1332	 53.21	+1	1572972..1573454	+	160	88602654	-	Mhun_1373	-	hypothetical protein
1333	 47.28	0	1573458..1573751	-	97	88602655	-	Mhun_1374	-	hypothetical protein
1334	 49.11	0	1573758..1574657	-	299	88602656	-	Mhun_1375	-	CRISPR-associated Cas1 family protein
1335	 43.67	0	1574654..1575340	-	228	88602657	-	Mhun_1376	-	CRISPR-associated Cse3 family protein
1336	 47.35	0	1575343..1576020	-	225	88602658	-	Mhun_1377	-	CRISPR-associated Cas5e family protein
1337	 42.99	0	1576077..1577225	-	382	88602659	-	Mhun_1378	-	CRISPR-associated Cse4 family protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.