IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1197	 44.63	0	1405904..1406824	-	306	88602519	-	Mhun_1232	-	PHP-like
1198	 42.74	0	1406885..1407490	-	201	88602520	-	Mhun_1233	-	hypothetical protein
1199	 40.51	-1	1407560..1409218	+	552	88602521	-	Mhun_1234	-	multi-sensor signal transduction histidine kinase
1200	 42.12	0	1409215..1410102	+	295	88602522	-	Mhun_1235	-	beta-lactamase-like
1201	 42.64	0	1410108..1410698	-	196	88602523	-	Mhun_1236	-	TetR family transcriptional regulator
1202	 43.70	0	1410721..1411926	-	401	88602524	-	Mhun_1237	-	aldo/keto reductase
1203	 46.01	0	1412066..1412341	+	91	88602525	-	Mhun_1238	-	flagellin (flaB1-1)
1204	 40.65	-1	1413026..1413736	-	236	88602526	-	Mhun_1240	-	hypothetical protein
1205	 47.02	0	1414021..1414524	-	167	88602527	-	Mhun_1241	-	acetolactate synthase 3 regulatory subunit
1206	 50.59	0	1414526..1416217	-	563	88602528	-	Mhun_1242	-	acetolactate synthase, large subunit, biosynthetic type
1207	 51.22	+1	1416189..1417703	-	504	88602529	-	Mhun_1243	-	isopropylmalate/citramalate/homocitrate synthase
1208	 49.57	0	1417858..1418553	-	231	88602530	-	Mhun_1244	-	hypothetical protein
1209	 48.59	0	1418756..1419751	+	331	88602531	-	Mhun_1245	-	ketol-acid reductoisomerase
1210	 48.90	0	1419779..1421005	-	408	88602532	-	Mhun_1246	-	CRISPR-associated TM1812 family protein
1211	 47.19	0	1421026..1422201	+	391	88602533	-	Mhun_1247	-	glycosyl transferase, group 1
1212	 42.54	0	1422218..1422532	+	104	88602534	-	Mhun_1248	-	hypothetical protein
1213	 45.81	0	1422581..1423045	+	154	88602535	-	Mhun_1249	-	hypothetical protein
1214	 42.52	0	1423064..1423858	-	264	88602536	-	Mhun_1250	-	hypothetical protein
1215	 46.74	0	1424982..1425272	-	96	88602537	-	Mhun_1252	-	hypothetical protein
1216	 49.12	0	1425426..1427123	-	565	88602538	-	Mhun_1253	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1217	 45.57	0	1427203..1427856	+	217	88602539	-	Mhun_1254	-	hypothetical protein
1218	 46.80	0	1427866..1428303	-	145	88602540	-	Mhun_1255	-	hypothetical protein
1219	 43.43	0	1428356..1429078	-	240	88602541	-	Mhun_1256	-	glycosyl transferase family protein
1220	 46.05	0	1429169..1430269	+	366	88602542	-	Mhun_1257	-	hypothetical protein
1221	 48.89	0	1430294..1431013	-	239	88602543	-	Mhun_1258	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1222	 49.55	0	1431010..1431675	-	221	88602544	-	Mhun_1259	-	hypothetical protein
1223	 44.84	0	1431902..1432327	+	141	88602545	-	Mhun_1260	-	hypothetical protein
1224	 40.35	-1	1432933..1433559	-	208	88602546	-	Mhun_1262	-	GCN5-related N-acetyltransferase
1225	 43.50	0	1433603..1433956	-	117	88602547	-	Mhun_1263	-	4Fe-4S ferredoxin, iron-sulfur binding
1226	 44.17	0	1433935..1434423	-	162	88602548	-	Mhun_1264	-	hypothetical protein
1227	 37.54	-1	1435368..1435652	-	94	88602549	-	Mhun_1265	-	hypothetical protein
1228	 43.64	0	1435733..1436392	-	219	88602550	-	Mhun_1266	-	methyltransferase type 11
1229	 42.98	0	1436558..1439107	-	849	88602551	-	Mhun_1267	-	putative PAS/PAC sensor protein
1230	 43.75	0	1439360..1440031	+	223	88602552	-	Mhun_1268	-	hypothetical protein
1231	 44.98	0	1440232..1440789	+	185	88602553	-	Mhun_1269	-	hypothetical protein
1232	 45.55	0	1441475..1443439	+	654	88602554	-	Mhun_1270	-	beta-lactamase-like
1233	 47.52	0	1443568..1444173	+	201	88602555	-	Mhun_1271	-	4Fe-4S ferredoxin, iron-sulfur binding
1234	 47.48	0	1444189..1446075	+	628	88602556	-	Mhun_1272	-	carbon-monoxide dehydrogenase, catalytic subunit
1235	 45.76	0	1446096..1446578	+	160	88602557	-	Mhun_1273	-	NADH dehydrogenase (ubiquinone), 24 kDa subunit
1236	 49.50	0	1446575..1448263	+	562	88602558	-	Mhun_1274	-	NADH dehydrogenase (quinone)
1237	 47.11	0	1448265..1449077	+	270	88602559	-	Mhun_1275	-	ferredoxin
1238	 47.62	0	1449118..1449936	+	272	88602560	-	Mhun_1276	-	cobyrinic acid a,c-diamide synthase
1239	 42.20	0	1450028..1450309	+	93	88602561	-	Mhun_1277	-	prevent-host-death protein
1240	 41.20	0	1450217..1450699	-	160	88602562	-	Mhun_1278	-	hypothetical protein
1241	 50.18	0	1450776..1451624	-	282	88602563	-	Mhun_1279	-	Pirin-like
1242	 44.02	0	1451736..1452446	-	236	88602564	-	Mhun_1280	-	4Fe-4S ferredoxin, iron-sulfur binding
1243	 43.89	0	1452629..1453291	+	220	88602565	-	Mhun_1281	-	carbonate dehydratase
1244	 44.58	0	1453357..1453596	-	79	88602566	-	Mhun_1282	-	hypothetical protein
1245	 41.67	0	1453719..1453946	-	75	88602567	-	Mhun_1283	-	hypothetical protein
1246	 44.92	0	1453943..1454434	-	163	88602568	-	Mhun_1284	-	hypothetical protein
1247	 45.85	0	1454680..1455294	+	204	88602569	-	Mhun_1285	-	GTPase EngC
1248	 42.78	0	1455658..1456356	+	232	88602570	-	Mhun_1286	-	hypothetical protein
1249	 42.06	0	1456363..1459170	-	935	88602571	-	Mhun_1287	-	multi-sensor signal transduction histidine kinase
1250	 44.52	0	1459427..1459846	+	139	88602572	-	Mhun_1288	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1251	 47.50	0	1460122..1462719	-	865	88602573	-	Mhun_1289	-	ATPase AAA-2
1252	 43.35	0	1463147..1463785	+	212	88602574	-	Mhun_1290	-	response regulator receiver domain-containing protein
1253	 49.19	0	1463843..1470904	-	2353	88602575	-	Mhun_1291	-	mucin 2, intestinal/tracheal
1254	 41.07	0	1471242..1472120	+	292	88602576	-	Mhun_1292	-	hypothetical protein
1255	 40.86	0	1472242..1473078	+	278	88602577	-	Mhun_1293	-	hypothetical protein
1256	 45.35	0	1473206..1474786	-	526	88602578	-	Mhun_1294	-	Signal transduction histidine kinase-like
1257	 47.66	0	1476293..1476655	-	120	88602579	-	Mhun_1296	-	hypothetical protein
1258	 34.03	-2	1478592..1481591	+	999	88602580	-	Mhun_1298	-	ATPase
1259	 42.01	0	1481596..1482909	+	437	88602581	-	Mhun_1299	-	McrBC 5-methylcytosine restriction system component-like
1260	 45.80	0	1482946..1483338	-	130	88602582	-	Mhun_1300	-	YjgF-like protein
1261	 46.64	0	1484368..1486404	-	678	88602583	-	Mhun_1301	-	peptidase S9, prolyl oligopeptidase active site region
1262	 44.54	0	1486500..1486847	-	115	88602584	-	Mhun_1302	-	hypothetical protein
1263	 46.93	0	1487002..1489701	-	899	88602585	-	Mhun_1303	-	hypothetical protein
1264	 43.19	0	1489810..1490529	+	239	88602586	-	Mhun_1304	-	hypothetical protein
1265	 41.16	0	1490646..1490939	+	97	88602587	-	Mhun_1305	-	hypothetical protein
1266	 48.92	0	1492038..1492916	-	292	88602588	-	Mhun_1307	-	heat shock protein HtpX
1267	 50.33	0	1493006..1493464	-	152	88602589	-	Mhun_1308	-	hypothetical protein
1268	 45.24	0	1493592..1495010	-	472	88602590	-	Mhun_1309	-	multi-sensor signal transduction histidine kinase
1269	 40.96	0	1495279..1495842	+	187	88602591	-	Mhun_1310	-	hypothetical protein
1270	 47.99	0	1495985..1496557	-	190	88602592	-	Mhun_1311	-	rubrerythrin
1271	 42.83	0	1496661..1497134	+	157	88602593	-	Mhun_1312	-	hypothetical protein
1272	 47.26	0	1497149..1497586	-	145	88602594	-	Mhun_1313	-	iron dependent repressor
1273	 42.17	0	1498914..1500056	+	380	88602595	-	Mhun_1314	-	periplasmic binding protein
1274	 45.13	0	1500073..1501098	+	341	88602596	-	Mhun_1315	-	O-methyltransferase family protein
1275	 38.53	-1	1501211..1502383	+	390	88602597	-	Mhun_1316	-	periplasmic binding protein
1276	 43.45	0	1502395..1503234	+	279	88602598	-	Mhun_1317	-	ribosomal RNA adenine dimethylase
1277	 45.52	0	1503279..1504361	+	360	88602599	-	Mhun_1318	-	transport system permease protein
1278	 46.59	0	1504358..1505134	+	258	88602600	-	Mhun_1319	-	ABC transporter related
1279	 37.79	-1	1505166..1506041	-	291	88602601	-	Mhun_1320	-	putative methyltransferase
1280	 40.69	-1	1506179..1507279	+	366	88602602	-	Mhun_1321	-	periplasmic binding protein
1281	 42.57	0	1507570..1508511	+	313	88602603	-	Mhun_1322	-	aminoglycoside phosphotransferase
1282	 46.27	0	1508552..1509301	-	249	88602604	-	Mhun_1323	-	hypothetical protein
1283	 43.88	0	1509693..1510109	+	138	88602605	-	Mhun_1324	-	iron dependent repressor
1284	 45.26	0	1510306..1514370	+	1354	88602606	-	Mhun_1325	-	CoA enzyme activase
1285	 44.29	0	1514393..1514812	+	139	88602607	-	Mhun_1326	-	hypothetical protein
1286	 39.47	-1	1515013..1515501	+	162	88602608	-	Mhun_1327	-	PadR-like family transcriptional regulator
1287	 44.01	0	1515552..1516094	+	180	88602609	-	Mhun_1328	-	hypothetical protein
1288	 44.90	0	1516108..1516920	+	270	88602610	-	Mhun_1329	-	formylmethanofuran dehydrogenase, subunit E region
1289	 42.07	0	1516936..1517553	+	205	88602611	-	Mhun_1330	-	UbiE/COQ5 methyltransferase
1290	 41.74	0	1517719..1518765	-	348	88602612	-	Mhun_1331	-	ABC transporter related
1291	 44.40	0	1518775..1519569	-	264	88602613	-	Mhun_1332	-	NifC-like ABC-type porter
1292	 39.93	-1	1519566..1520111	-	181	88602614	-	Mhun_1333	-	hypothetical protein
1293	 42.20	0	1520159..1521004	-	281	88602615	-	Mhun_1334	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1294	 43.25	0	1521479..1522951	-	490	88602616	-	Mhun_1335	-	RNA-directed DNA polymerase
1295	 43.43	0	1523695..1524714	-	339	88602617	-	Mhun_1336	-	O-methyltransferase family protein
1296	 51.21	+1	1524718..1525752	-	344	88602618	-	Mhun_1337	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.