IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1077	 44.57	0	1251610..1253175	+	521	88602399	-	Mhun_1109	-	NHL repeat-containing protein
1078	 49.38	0	1253191..1253994	-	267	88602400	-	Mhun_1110	-	hypothetical protein
1079	 41.25	0	1254035..1255588	-	517	88602401	-	Mhun_1111	-	hypothetical protein
1080	 48.58	0	1255935..1257233	+	432	88602402	-	Mhun_1112	-	phosphoribosylamine--glycine ligase
1081	 50.94	+1	1257230..1258138	+	302	88602403	-	Mhun_1113	-	ornithine carbamoyltransferase
1082	 38.68	-1	1258328..1258645	+	105	88602404	-	Mhun_1114	-	nucleotidyltransferases-like
1083	 45.66	0	1258720..1259733	-	337	88602405	-	Mhun_1115	-	hypothetical protein
1084	 52.85	+1	1259800..1260255	-	151	88602406	-	Mhun_1116	-	ribonuclease III
1085	 52.38	+1	1260259..1261602	-	447	88602407	-	Mhun_1117	-	glutamate synthase (NADPH), homotetrameric
1086	 49.29	0	1261603..1262442	-	279	88602408	-	Mhun_1118	-	ferredoxin--NADP(+) reductase subunit alpha
1087	 53.93	+1	1262481..1264121	-	546	88602409	-	Mhun_1119	-	hypothetical protein
1088	 53.20	+1	1264108..1265577	-	489	88602410	-	Mhun_1120	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
1089	 41.90	0	1265889..1267592	+	567	88602411	-	Mhun_1121	-	hypothetical protein
1090	 50.87	+1	1267779..1268354	-	191	88602412	-	Mhun_1122	-	AMMECR1
1091	 49.55	0	1268407..1269615	-	402	88602413	-	Mhun_1123	-	geranylgeranyl reductase
1092	 50.00	0	1269612..1269785	-	57	88602414	-	Mhun_1124	-	4Fe-4S ferredoxin, iron-sulfur binding
1093	 49.43	0	1269812..1270954	-	380	88602415	-	Mhun_1125	-	PHP-like
1094	 48.94	0	1270957..1271712	-	251	88602416	-	Mhun_1126	-	hypothetical protein
1095	 45.33	0	1271779..1271928	-	49	88602417	-	Mhun_1127	-	nucleolar RNA-binding protein Nop10p
1096	 48.43	0	1271925..1272719	-	264	88602418	-	Mhun_1128	-	translation initiation factor IF-2 subunit alpha
1097	 46.03	0	1272727..1272915	-	62	88602419	rps27e	Mhun_1129	-	30S ribosomal protein S27e
1098	 48.03	0	1272921..1273199	-	92	88602420	rpl44e	Mhun_1130	-	50S ribosomal protein L44e
1099	 50.81	+1	1273238..1273918	-	226	88602421	-	Mhun_1131	-	hypothetical protein
1100	 50.30	0	1273908..1275074	-	388	88602422	-	Mhun_1132	-	DNA primase, small subunit, putative
1101	 53.28	+1	1275078..1276646	-	522	88602423	-	Mhun_1133	-	ELP3 family histone acetyltransferase
1102	 41.67	0	1276651..1276938	-	95	88602424	-	Mhun_1134	-	hypothetical protein
1103	 50.42	0	1277081..1277554	-	157	88602425	-	Mhun_1135	-	hypothetical protein
1104	 52.31	+1	1277559..1278638	-	359	88602426	-	Mhun_1136	-	3-dehydroquinate synthase
1105	 46.69	0	1278653..1279498	+	281	88602427	-	Mhun_1137	-	hypothetical protein
1106	 44.56	0	1279491..1280060	+	189	88602428	-	Mhun_1138	-	hypothetical protein
1107	 49.13	0	1280071..1281507	+	478	88602429	-	Mhun_1139	-	prolyl-tRNA synthetase
1108	 45.48	0	1281555..1282328	+	257	88602430	-	Mhun_1140	-	phosphomethylpyrimidine kinase
1109	 46.49	0	1282586..1285336	+	916	88602431	-	Mhun_1141	-	pyruvate phosphate dikinase
1110	 44.44	0	1285353..1285802	-	149	88602432	-	Mhun_1142	-	hypothetical protein
1111	 43.33	0	1287932..1288501	-	189	88602433	-	Mhun_1144	-	flavin reductase-like, FMN-binding
1112	 44.76	0	1288599..1290077	+	492	88602434	-	Mhun_1145	-	ribonuclease II
1113	 39.75	-1	1290102..1290506	-	134	88602435	-	Mhun_1146	-	anti-sigma-factor antagonist domain-containing protein
1114	 37.73	-1	1290639..1291661	+	340	88602436	-	Mhun_1147	-	putative PAS/PAC sensor protein
1115	 42.82	0	1291671..1293230	-	519	88602437	-	Mhun_1148	-	GHMP kinase group 1
1116	 41.17	0	1293690..1294901	+	403	88602438	-	Mhun_1149	-	thiamine biosynthesis protein ThiC
1117	 39.95	-1	1295017..1295877	-	286	88602439	-	Mhun_1150	-	nucleoside 2-deoxyribosyltransferase
1118	 38.66	-1	1296037..1296693	-	218	88602440	-	Mhun_1151	-	CheC, inhibitor of MCP methylation
1119	 31.97	-2	1296765..1297205	-	146	88602441	-	Mhun_1152	-	hypothetical protein
1120	 47.77	0	1303164..1303925	-	253	88602442	-	Mhun_1153	-	dihydroorotate dehydrogenase electron transfer subunit
1121	 48.87	0	1303918..1304805	-	295	88602443	-	Mhun_1154	-	dihydroorotate dehydrogenase 1B
1122	 44.22	0	1304862..1305734	+	290	88602444	-	Mhun_1155	-	lactate/malate dehydrogenase
1123	 44.81	0	1305745..1308201	+	818	88602445	-	Mhun_1156	-	DNA polymerase B region
1124	 49.52	0	1308209..1309561	+	450	88602446	-	Mhun_1157	-	cobyrinic acid a,c-diamide synthase
1125	 46.19	0	1309565..1311190	-	541	88602447	-	Mhun_1158	-	putative manganese-dependent inorganic pyrophosphatase
1126	 42.74	0	1311283..1311909	+	208	88602448	-	Mhun_1159	-	hypothetical protein
1127	 48.04	0	1312122..1314983	+	953	88602449	-	Mhun_1160	-	excinuclease ABC, A subunit
1128	 44.27	0	1314985..1316547	+	520	88602450	uvrC	Mhun_1161	-	excinuclease ABC subunit C
1129	 44.53	0	1316544..1318472	+	642	88602451	-	Mhun_1162	-	excinuclease ABC subunit B
1130	 44.31	0	1318487..1322056	-	1189	88602452	-	Mhun_1163	-	PKD
1131	 38.34	-1	1322319..1325354	-	1011	88602453	-	Mhun_1164	-	PKD
1132	 43.95	0	1325601..1326071	+	156	88602454	-	Mhun_1165	-	peptidylprolyl isomerase
1133	 44.30	0	1326075..1326758	-	227	88602455	-	Mhun_1166	-	peptidylprolyl isomerase, FKBP-type
1134	 40.91	0	1326809..1327336	+	175	88602456	-	Mhun_1167	-	adenylyl cyclase CyaB, putative
1135	 47.98	0	1327326..1327967	-	213	88602457	-	Mhun_1168	-	metallophosphoesterase
1136	 47.81	0	1327974..1329092	-	372	88602458	-	Mhun_1169	-	radical SAM family protein
1137	 40.76	0	1329095..1329808	-	237	88602459	-	Mhun_1170	-	putative circadian clock protein, KaiC
1138	 40.95	0	1329805..1330671	-	288	88602460	-	Mhun_1171	-	HTR-like protein
1139	 42.54	0	1330877..1332799	+	640	88602461	-	Mhun_1172	-	type II secretion system protein E
1140	 43.30	0	1332796..1334721	+	641	88602462	-	Mhun_1173	-	type II secretion system protein
1141	 42.85	0	1334741..1336789	-	682	88602463	-	Mhun_1174	-	hypothetical protein
1142	 45.60	0	1336951..1338531	-	526	88602464	-	Mhun_1175	-	methyl-accepting chemotaxis sensory transducer
1143	 37.42	-1	1338705..1340342	+	545	88602465	-	Mhun_1176	-	transposase
1144	 45.76	0	1340477..1340806	+	109	88602466	-	Mhun_1177	-	V-type H+-transporting ATPase subunit E
1145	 45.88	0	1340793..1342817	+	674	88602467	-	Mhun_1178	-	V-type ATP synthase subunit I
1146	 53.49	+1	1342843..1343100	+	85	88602468	-	Mhun_1179	-	H+-transporting two-sector ATPase, C subunit
1147	 48.26	0	1343115..1343690	+	191	88602469	-	Mhun_1180	-	H+-transporting two-sector ATPase, E subunit
1148	 47.92	0	1343709..1344764	+	351	88602470	-	Mhun_1181	-	V-type ATP synthase subunit C
1149	 46.53	0	1344766..1345068	+	100	88602471	-	Mhun_1182	-	V-type ATP synthase subunit F
1150	 50.89	+1	1345059..1346807	+	582	88602472	-	Mhun_1183	-	V-type ATP synthase subunit A
1151	 50.47	0	1346808..1348190	+	460	88602473	-	Mhun_1184	-	V-type ATP synthase subunit B
1152	 46.35	0	1348197..1348826	+	209	88602474	-	Mhun_1185	-	V-type ATP synthase subunit D
1153	 41.89	0	1349007..1349228	+	73	88602475	-	Mhun_1186	-	AbrB family transcriptional regulator
1154	 44.32	0	1350442..1351524	+	360	88602476	-	Mhun_1187	-	hypothetical protein
1155	 39.44	-1	1351448..1353067	-	539	88602477	-	Mhun_1188	-	hypothetical protein
1156	 35.63	-2	1353555..1353815	+	86	88602478	-	Mhun_1189	-	hypothetical protein
1157	 39.24	-1	1353875..1354297	+	140	88602479	-	Mhun_1190	-	hypothetical protein
1158	 40.00	-1	1354547..1356151	+	534	88602480	-	Mhun_1191	-	hypothetical protein
1159	 42.07	0	1358193..1359761	-	522	88602481	-	Mhun_1193	-	hypothetical protein
1160	 46.45	0	1359932..1361158	+	408	88602482	-	Mhun_1194	-	phosphoglycerate kinase
1161	 46.19	0	1361223..1362140	+	305	88602483	-	Mhun_1195	-	glyoxalase/bleomycin resistance protein/dioxygenase
1162	 41.01	0	1362194..1363105	+	303	88602484	-	Mhun_1196	-	CRISPR-associated Cas1 family protein
1163	 46.92	0	1363300..1364661	-	453	88602485	-	Mhun_1197	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1164	 45.48	0	1364648..1365256	-	202	88602486	-	Mhun_1198	-	hypothetical protein
1165	 43.45	0	1365445..1368351	-	968	88602487	-	Mhun_1199	-	multi-sensor signal transduction histidine kinase
1166	 44.71	0	1368406..1369152	-	248	88602488	-	Mhun_1200	-	response regulator receiver domain-containing protein
1167	 48.01	0	1369370..1370275	+	301	88602489	-	Mhun_1201	-	phage integrase
1168	 44.64	0	1370272..1370616	+	114	88602490	-	Mhun_1202	-	hypothetical protein
1169	 46.03	0	1370887..1373076	+	729	88602491	-	Mhun_1203	-	Alpha-glucan phosphorylase
1170	 45.53	0	1373081..1373449	-	122	88602492	-	Mhun_1204	-	hypothetical protein
1171	 42.50	0	1373458..1373697	-	79	88602493	-	Mhun_1205	-	like-Sm ribonucleoprotein, core
1172	 44.87	0	1373758..1374693	-	311	88602494	-	Mhun_1206	-	inositol phosphatase/fructose-1,6-bisphosphatase
1173	 43.04	0	1375335..1376807	+	490	88602495	-	Mhun_1207	-	RNA-directed DNA polymerase
1174	 44.89	0	1376910..1378769	+	619	88602496	-	Mhun_1208	-	multi-sensor signal transduction histidine kinase
1175	 48.37	0	1378794..1378946	+	50	88602497	-	Mhun_1209	-	rubredoxin-type Fe(Cys)4 protein
1176	 46.03	0	1378948..1380570	-	540	88602498	-	Mhun_1210	-	putative PAS/PAC sensor protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.