IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
982	 48.77	0	1143499..1144794	-	431	88602304	-	Mhun_1013	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
983	 43.70	0	1144796..1145065	-	89	88602305	-	Mhun_1014	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
984	 48.18	0	1145073..1146062	-	329	88602306	-	Mhun_1015	-	asparagine synthase
985	 44.51	0	1146202..1147239	+	345	88602307	-	Mhun_1016	-	hypothetical protein
986	 40.62	-1	1147256..1147735	+	159	88602308	-	Mhun_1017	-	hypothetical protein
987	 46.60	0	1147730..1149010	-	426	88602309	-	Mhun_1018	-	phosphopyruvate hydratase
988	 46.42	0	1149022..1149678	-	218	88602310	-	Mhun_1019	-	hypothetical protein
989	 45.22	0	1149783..1150682	+	299	88602311	-	Mhun_1020	-	8-oxoguanine DNA glycosylase-like
990	 46.00	0	1150657..1151832	-	391	88602312	-	Mhun_1021	-	phosphate transporter
991	 42.70	0	1151838..1152467	-	209	88602313	-	Mhun_1022	-	hypothetical protein
992	 47.84	0	1152516..1153721	-	401	88602314	-	Mhun_1023	-	phosphate transporter
993	 39.49	-1	1153725..1154357	-	210	88602315	-	Mhun_1024	-	phosphate transport regulator-like
994	 42.62	0	1154431..1154979	-	182	88602316	-	Mhun_1025	-	hypothetical protein
995	 43.99	0	1155139..1156818	+	559	88602317	-	Mhun_1026	-	putative PAS/PAC sensor protein
996	 46.35	0	1156819..1157502	-	227	88602318	-	Mhun_1027	-	triosephosphate isomerase
997	 45.83	0	1157581..1160085	-	834	88602319	-	Mhun_1028	-	peptidase U32
998	 47.92	0	1160095..1161102	-	335	88602320	-	Mhun_1029	-	chorismate synthase
999	 47.03	0	1161099..1162463	-	454	88602321	-	Mhun_1030	-	shikimate 5-dehydrogenase
1000	 49.11	0	1162457..1163749	-	430	88602322	-	Mhun_1031	-	3-phosphoshikimate 1-carboxyvinyltransferase
1001	 45.41	0	1163740..1164534	-	264	88602323	-	Mhun_1032	-	prephenate dehydratase
1002	 48.36	0	1164531..1165355	-	274	88602324	-	Mhun_1033	-	prephenate dehydrogenase
1003	 50.15	0	1165357..1166343	-	328	88602325	-	Mhun_1034	-	3-dehydroquinate synthase
1004	 47.93	0	1166350..1167123	-	257	88602326	-	Mhun_1035	-	fructose-bisphosphate aldolase
1005	 51.06	+1	1167120..1167920	-	266	88602327	-	Mhun_1036	-	fructose-bisphosphate aldolase
1006	 50.48	0	1168213..1168731	-	172	88602328	-	Mhun_1037	-	XRE family transcriptional regulator
1007	 49.31	0	1168766..1170004	+	412	88602329	-	Mhun_1038	-	proteasome-activating nucleotidase
1008	 46.63	0	1170005..1170508	-	167	88602330	-	Mhun_1039	-	hypothetical protein
1009	 48.63	0	1170520..1171683	-	387	88602331	-	Mhun_1040	-	proteasome-activating nucleotidase
1010	 50.60	0	1171726..1172142	+	138	88602332	-	Mhun_1041	-	hypothetical protein
1011	 43.51	0	1172146..1172823	-	225	88602333	-	Mhun_1042	-	hypothetical protein
1012	 44.41	0	1173035..1173919	+	294	88602334	-	Mhun_1043	-	hypothetical protein
1013	 47.44	0	1174010..1176037	+	675	88602335	-	Mhun_1044	-	DNA gyrase, B subunit
1014	 48.73	0	1176027..1178546	+	839	88602336	-	Mhun_1045	-	DNA gyrase, A subunit
1015	 34.31	-2	1178593..1179000	+	135	88602337	-	Mhun_1046	-	DNA polymerase, beta-like region
1016	 32.86	-2	1178997..1179419	+	140	88602338	-	Mhun_1047	-	hypothetical protein
1017	 44.92	0	1179411..1182206	-	931	88602339	-	Mhun_1048	-	multi-sensor signal transduction histidine kinase
1018	 44.59	0	1182417..1183091	-	224	88602340	-	Mhun_1049	-	purine phosphorylase family 2
1019	 47.69	0	1183395..1184042	-	215	88602341	-	Mhun_1050	-	endonuclease III
1020	 50.21	0	1184172..1184882	-	236	88602342	-	Mhun_1051	-	uridylate kinase, putative
1021	 49.50	0	1184984..1185991	+	335	88602343	-	Mhun_1052	-	radical SAM family protein
1022	 43.84	0	1186027..1186464	+	145	88602344	-	Mhun_1053	-	hypothetical protein
1023	 45.45	0	1186481..1186942	-	153	88602345	-	Mhun_1054	-	hypothetical protein
1024	 43.59	0	1187075..1187347	+	90	88602346	groES	Mhun_1055	-	co-chaperonin GroES
1025	 50.16	0	1187357..1188967	+	536	88602347	groEL	Mhun_1056	-	chaperonin GroEL
1026	 42.47	0	1188994..1189212	-	72	88602348	-	Mhun_1057	-	hypothetical protein
1027	 49.70	0	1189243..1191051	-	602	88602349	-	Mhun_1058	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1028	 48.77	0	1191109..1193712	-	867	88602350	-	Mhun_1059	-	hypothetical protein
1029	 53.56	+1	1193806..1195125	+	439	88602351	-	Mhun_1060	-	AIR synthase related protein
1030	 51.26	+1	1195283..1198222	+	979	88602352	-	Mhun_1061	-	phosphoribosylformylglycinamidine synthase II
1031	 49.47	0	1198225..1199073	+	282	88602353	-	Mhun_1062	-	phosphoribosylformylglycinamidine synthase I
1032	 43.72	0	1199217..1200698	+	493	88602354	-	Mhun_1063	-	hypothetical protein
1033	 42.16	0	1200899..1201306	-	135	88602355	-	Mhun_1064	-	hypothetical protein
1034	 39.55	-1	1201933..1202592	-	219	88602356	-	Mhun_1065	-	hypothetical protein
1035	 40.55	-1	1202897..1203409	-	170	88602357	-	Mhun_1066	-	PEGA
1036	 39.95	-1	1203744..1204151	-	135	88602358	-	Mhun_1067	-	hypothetical protein
1037	 34.78	-2	1204619..1204894	-	91	88602359	-	Mhun_1068	-	hypothetical protein
1038	 42.41	0	1205091..1206137	-	348	88602360	-	Mhun_1069	-	putative PAS/PAC sensor protein
1039	 36.51	-1	1206218..1207951	+	577	88602361	-	Mhun_1070	-	transposase, IS4
1040	 43.06	0	1207938..1208420	-	160	88602362	-	Mhun_1071	-	hypothetical protein
1041	 39.53	-1	1209865..1210623	-	252	88602363	-	Mhun_1073	-	regulatory protein, ArsR
1042	 49.38	0	1210918..1211160	+	80	88602364	-	Mhun_1074	-	MTH865-like
1043	 45.55	0	1211369..1212121	-	250	88602365	-	Mhun_1075	-	hypothetical protein
1044	 41.12	0	1212761..1213312	-	183	88602366	-	Mhun_1076	-	hypothetical protein
1045	 44.38	0	1213815..1215860	-	681	88602367	-	Mhun_1077	-	putative ATP-dependent Lon protease
1046	 44.16	0	1215866..1218175	-	769	88602368	-	Mhun_1078	-	hypothetical protein
1047	 35.83	-1	1218177..1218857	-	226	88602369	-	Mhun_1079	-	hypothetical protein
1048	 42.52	0	1218862..1219971	-	369	88602370	-	Mhun_1080	-	hypothetical protein
1049	 46.36	0	1219968..1223291	-	1107	88602371	-	Mhun_1081	-	hypothetical protein
1050	 42.32	0	1223458..1223724	-	88	88602372	-	Mhun_1082	-	hypothetical protein
1051	 44.53	0	1223800..1227300	-	1166	88602373	-	Mhun_1083	-	hypothetical protein
1052	 40.54	-1	1227287..1227841	-	184	88602374	-	Mhun_1084	-	hypothetical protein
1053	 39.97	-1	1227838..1228530	-	230	88602375	-	Mhun_1085	-	hypothetical protein
1054	 49.14	0	1229330..1229620	-	96	88602376	-	Mhun_1086	-	hypothetical protein
1055	 53.48	+1	1229795..1230355	-	186	88602377	-	Mhun_1087	-	hypothetical protein
1056	 47.82	0	1230381..1230884	-	167	88602378	-	Mhun_1088	-	hypothetical protein
1057	 48.23	0	1230992..1231555	-	187	88602379	-	Mhun_1089	-	hypothetical protein
1058	 50.30	0	1231552..1234770	-	1072	88602380	-	Mhun_1090	-	hypothetical protein
1059	 51.59	+1	1234767..1235111	-	114	88602381	-	Mhun_1091	-	hypothetical protein
1060	 50.97	+1	1235710..1236894	+	394	88602382	-	Mhun_1092	-	major facilitator transporter
1061	 45.20	0	1237059..1237901	+	280	88602383	-	Mhun_1093	-	hypothetical protein
1062	 46.09	0	1237947..1238189	+	80	88602384	-	Mhun_1094	-	hypothetical protein
1063	 45.90	0	1238446..1240212	+	588	88602385	-	Mhun_1095	-	dynamin
1064	 45.96	0	1240758..1242752	-	664	88602386	-	Mhun_1096	-	GTP-binding protein, HSR1-related
1065	 43.57	0	1242847..1243305	-	152	88602387	-	Mhun_1097	-	hypothetical protein
1066	 43.26	0	1243336..1243758	+	140	88602388	-	Mhun_1098	-	camphor resistance CrcB protein
1067	 45.45	0	1243746..1244108	+	120	88602389	-	Mhun_1099	-	crcB protein
1068	 44.75	0	1244109..1244432	+	107	88602390	-	Mhun_1100	-	hypothetical protein
1069	 49.26	0	1244507..1245787	-	426	88602391	-	Mhun_1101	-	phosphopyruvate hydratase
1070	 44.92	0	1246011..1246364	+	117	88602392	-	Mhun_1102	-	hypothetical protein
1071	 51.40	+1	1246467..1247789	+	440	88602393	-	Mhun_1103	-	DNA primase
1072	 45.61	0	1247847..1248131	+	94	88602394	-	Mhun_1104	-	hypothetical protein
1073	 50.32	0	1248138..1248926	-	262	88602395	-	Mhun_1105	-	S6 modification enzyme RimK
1074	 47.38	0	1248947..1250434	-	495	88602396	-	Mhun_1106	-	radical SAM family protein
1075	 51.53	+1	1250461..1251048	+	195	88602397	-	Mhun_1107	-	hypothetical protein
1076	 50.29	0	1251042..1251560	+	172	88602398	-	Mhun_1108	-	orotate phosphoribosyltransferase
1077	 44.57	0	1251610..1253175	+	521	88602399	-	Mhun_1109	-	NHL repeat-containing protein
1078	 49.38	0	1253191..1253994	-	267	88602400	-	Mhun_1110	-	hypothetical protein
1079	 41.25	0	1254035..1255588	-	517	88602401	-	Mhun_1111	-	hypothetical protein
1080	 48.58	0	1255935..1257233	+	432	88602402	-	Mhun_1112	-	phosphoribosylamine--glycine ligase
1081	 50.94	+1	1257230..1258138	+	302	88602403	-	Mhun_1113	-	ornithine carbamoyltransferase
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.