IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
959	 43.31	0	1112389..1114863	-	824	88602281	-	Mhun_0990	-	methyl-accepting chemotaxis sensory transducer
960	 42.93	0	1114966..1115517	-	183	88602282	-	Mhun_0991	-	CheW protein
961	 44.68	0	1115527..1117068	-	513	88602283	-	Mhun_0992	-	MCP methyltransferase, CheR-type
962	 44.25	0	1117065..1117568	-	167	88602284	-	Mhun_0993	-	CheW protein
963	 48.15	0	1117549..1118520	-	323	88602285	rfc	Mhun_0994	-	replication factor C small subunit
964	 46.02	0	1118609..1120453	-	614	88602286	-	Mhun_0995	-	tetratricopeptide TPR_2
965	 45.98	0	1120537..1122441	-	634	88602287	-	Mhun_0996	-	TPR repeat-containing protein
966	 43.85	0	1122915..1123532	-	205	88602288	-	Mhun_0997	-	hypothetical protein
967	 41.16	0	1124307..1124600	-	97	88602289	-	Mhun_0998	-	hypothetical protein
968	 40.32	-1	1124769..1125212	+	147	88602290	-	Mhun_0999	-	hypothetical protein
969	 44.24	0	1125628..1127799	-	723	88602291	-	Mhun_1000	-	Phage/plasmid primase P4-like
970	 41.47	0	1127792..1128172	-	126	88602292	-	Mhun_1001	-	hypothetical protein
971	 41.97	0	1128540..1129766	-	408	88602293	-	Mhun_1002	-	phage integrase
972	 44.73	0	1130675..1132060	-	461	88602294	-	Mhun_1003	-	hypothetical protein
973	 44.26	0	1132084..1132797	-	237	88602295	-	Mhun_1004	-	ABC transporter related
974	 47.06	0	1132975..1134744	-	589	88602296	-	Mhun_1005	-	aldehyde ferredoxin oxidoreductase
975	 49.72	0	1134734..1135093	-	119	88602297	-	Mhun_1006	-	4Fe-4S ferredoxin, iron-sulfur binding
976	 46.21	0	1135226..1137058	-	610	88602298	-	Mhun_1007	-	threonyl-tRNA synthetase
977	 46.06	0	1137178..1137735	-	185	88602299	-	Mhun_1008	-	deoxycytidine triphosphate deaminase
978	 47.22	0	1137757..1138512	-	251	88602300	-	Mhun_1009	-	RNA methyltransferase TrmH, group 1
979	 47.31	0	1138516..1139202	-	228	88602301	-	Mhun_1010	-	geranylgeranylglyceryl phosphate synthase-like protein
980	 47.93	0	1139275..1142070	-	931	88602302	-	Mhun_1011	-	DNA topoisomerase
981	 48.49	0	1142075..1143499	-	474	88602303	gatB	Mhun_1012	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
982	 48.77	0	1143499..1144794	-	431	88602304	-	Mhun_1013	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
983	 43.70	0	1144796..1145065	-	89	88602305	-	Mhun_1014	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
984	 48.18	0	1145073..1146062	-	329	88602306	-	Mhun_1015	-	asparagine synthase
985	 44.51	0	1146202..1147239	+	345	88602307	-	Mhun_1016	-	hypothetical protein
986	 40.62	-1	1147256..1147735	+	159	88602308	-	Mhun_1017	-	hypothetical protein
987	 46.60	0	1147730..1149010	-	426	88602309	-	Mhun_1018	-	phosphopyruvate hydratase
988	 46.42	0	1149022..1149678	-	218	88602310	-	Mhun_1019	-	hypothetical protein
989	 45.22	0	1149783..1150682	+	299	88602311	-	Mhun_1020	-	8-oxoguanine DNA glycosylase-like
990	 46.00	0	1150657..1151832	-	391	88602312	-	Mhun_1021	-	phosphate transporter
991	 42.70	0	1151838..1152467	-	209	88602313	-	Mhun_1022	-	hypothetical protein
992	 47.84	0	1152516..1153721	-	401	88602314	-	Mhun_1023	-	phosphate transporter
993	 39.49	-1	1153725..1154357	-	210	88602315	-	Mhun_1024	-	phosphate transport regulator-like
994	 42.62	0	1154431..1154979	-	182	88602316	-	Mhun_1025	-	hypothetical protein
995	 43.99	0	1155139..1156818	+	559	88602317	-	Mhun_1026	-	putative PAS/PAC sensor protein
996	 46.35	0	1156819..1157502	-	227	88602318	-	Mhun_1027	-	triosephosphate isomerase
997	 45.83	0	1157581..1160085	-	834	88602319	-	Mhun_1028	-	peptidase U32
998	 47.92	0	1160095..1161102	-	335	88602320	-	Mhun_1029	-	chorismate synthase
999	 47.03	0	1161099..1162463	-	454	88602321	-	Mhun_1030	-	shikimate 5-dehydrogenase
1000	 49.11	0	1162457..1163749	-	430	88602322	-	Mhun_1031	-	3-phosphoshikimate 1-carboxyvinyltransferase
1001	 45.41	0	1163740..1164534	-	264	88602323	-	Mhun_1032	-	prephenate dehydratase
1002	 48.36	0	1164531..1165355	-	274	88602324	-	Mhun_1033	-	prephenate dehydrogenase
1003	 50.15	0	1165357..1166343	-	328	88602325	-	Mhun_1034	-	3-dehydroquinate synthase
1004	 47.93	0	1166350..1167123	-	257	88602326	-	Mhun_1035	-	fructose-bisphosphate aldolase
1005	 51.06	+1	1167120..1167920	-	266	88602327	-	Mhun_1036	-	fructose-bisphosphate aldolase
1006	 50.48	0	1168213..1168731	-	172	88602328	-	Mhun_1037	-	XRE family transcriptional regulator
1007	 49.31	0	1168766..1170004	+	412	88602329	-	Mhun_1038	-	proteasome-activating nucleotidase
1008	 46.63	0	1170005..1170508	-	167	88602330	-	Mhun_1039	-	hypothetical protein
1009	 48.63	0	1170520..1171683	-	387	88602331	-	Mhun_1040	-	proteasome-activating nucleotidase
1010	 50.60	0	1171726..1172142	+	138	88602332	-	Mhun_1041	-	hypothetical protein
1011	 43.51	0	1172146..1172823	-	225	88602333	-	Mhun_1042	-	hypothetical protein
1012	 44.41	0	1173035..1173919	+	294	88602334	-	Mhun_1043	-	hypothetical protein
1013	 47.44	0	1174010..1176037	+	675	88602335	-	Mhun_1044	-	DNA gyrase, B subunit
1014	 48.73	0	1176027..1178546	+	839	88602336	-	Mhun_1045	-	DNA gyrase, A subunit
1015	 34.31	-2	1178593..1179000	+	135	88602337	-	Mhun_1046	-	DNA polymerase, beta-like region
1016	 32.86	-2	1178997..1179419	+	140	88602338	-	Mhun_1047	-	hypothetical protein
1017	 44.92	0	1179411..1182206	-	931	88602339	-	Mhun_1048	-	multi-sensor signal transduction histidine kinase
1018	 44.59	0	1182417..1183091	-	224	88602340	-	Mhun_1049	-	purine phosphorylase family 2
1019	 47.69	0	1183395..1184042	-	215	88602341	-	Mhun_1050	-	endonuclease III
1020	 50.21	0	1184172..1184882	-	236	88602342	-	Mhun_1051	-	uridylate kinase, putative
1021	 49.50	0	1184984..1185991	+	335	88602343	-	Mhun_1052	-	radical SAM family protein
1022	 43.84	0	1186027..1186464	+	145	88602344	-	Mhun_1053	-	hypothetical protein
1023	 45.45	0	1186481..1186942	-	153	88602345	-	Mhun_1054	-	hypothetical protein
1024	 43.59	0	1187075..1187347	+	90	88602346	groES	Mhun_1055	-	co-chaperonin GroES
1025	 50.16	0	1187357..1188967	+	536	88602347	groEL	Mhun_1056	-	chaperonin GroEL
1026	 42.47	0	1188994..1189212	-	72	88602348	-	Mhun_1057	-	hypothetical protein
1027	 49.70	0	1189243..1191051	-	602	88602349	-	Mhun_1058	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1028	 48.77	0	1191109..1193712	-	867	88602350	-	Mhun_1059	-	hypothetical protein
1029	 53.56	+1	1193806..1195125	+	439	88602351	-	Mhun_1060	-	AIR synthase related protein
1030	 51.26	+1	1195283..1198222	+	979	88602352	-	Mhun_1061	-	phosphoribosylformylglycinamidine synthase II
1031	 49.47	0	1198225..1199073	+	282	88602353	-	Mhun_1062	-	phosphoribosylformylglycinamidine synthase I
1032	 43.72	0	1199217..1200698	+	493	88602354	-	Mhun_1063	-	hypothetical protein
1033	 42.16	0	1200899..1201306	-	135	88602355	-	Mhun_1064	-	hypothetical protein
1034	 39.55	-1	1201933..1202592	-	219	88602356	-	Mhun_1065	-	hypothetical protein
1035	 40.55	-1	1202897..1203409	-	170	88602357	-	Mhun_1066	-	PEGA
1036	 39.95	-1	1203744..1204151	-	135	88602358	-	Mhun_1067	-	hypothetical protein
1037	 34.78	-2	1204619..1204894	-	91	88602359	-	Mhun_1068	-	hypothetical protein
1038	 42.41	0	1205091..1206137	-	348	88602360	-	Mhun_1069	-	putative PAS/PAC sensor protein
1039	 36.51	-1	1206218..1207951	+	577	88602361	-	Mhun_1070	-	transposase, IS4
1040	 43.06	0	1207938..1208420	-	160	88602362	-	Mhun_1071	-	hypothetical protein
1041	 39.53	-1	1209865..1210623	-	252	88602363	-	Mhun_1073	-	regulatory protein, ArsR
1042	 49.38	0	1210918..1211160	+	80	88602364	-	Mhun_1074	-	MTH865-like
1043	 45.55	0	1211369..1212121	-	250	88602365	-	Mhun_1075	-	hypothetical protein
1044	 41.12	0	1212761..1213312	-	183	88602366	-	Mhun_1076	-	hypothetical protein
1045	 44.38	0	1213815..1215860	-	681	88602367	-	Mhun_1077	-	putative ATP-dependent Lon protease
1046	 44.16	0	1215866..1218175	-	769	88602368	-	Mhun_1078	-	hypothetical protein
1047	 35.83	-1	1218177..1218857	-	226	88602369	-	Mhun_1079	-	hypothetical protein
1048	 42.52	0	1218862..1219971	-	369	88602370	-	Mhun_1080	-	hypothetical protein
1049	 46.36	0	1219968..1223291	-	1107	88602371	-	Mhun_1081	-	hypothetical protein
1050	 42.32	0	1223458..1223724	-	88	88602372	-	Mhun_1082	-	hypothetical protein
1051	 44.53	0	1223800..1227300	-	1166	88602373	-	Mhun_1083	-	hypothetical protein
1052	 40.54	-1	1227287..1227841	-	184	88602374	-	Mhun_1084	-	hypothetical protein
1053	 39.97	-1	1227838..1228530	-	230	88602375	-	Mhun_1085	-	hypothetical protein
1054	 49.14	0	1229330..1229620	-	96	88602376	-	Mhun_1086	-	hypothetical protein
1055	 53.48	+1	1229795..1230355	-	186	88602377	-	Mhun_1087	-	hypothetical protein
1056	 47.82	0	1230381..1230884	-	167	88602378	-	Mhun_1088	-	hypothetical protein
1057	 48.23	0	1230992..1231555	-	187	88602379	-	Mhun_1089	-	hypothetical protein
1058	 50.30	0	1231552..1234770	-	1072	88602380	-	Mhun_1090	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.