IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.64   STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
938	 71.75	0	1043998..1044567	-	189	163850395	-	Mext_0962	-	crossover junction endodeoxyribonuclease RuvC
939	 65.58	0	1044657..1045298	-	213	163850396	-	Mext_0963	-	YceI family protein
940	 70.65	0	1045385..1046011	+	208	163850397	-	Mext_0964	-	Holliday junction DNA helicase motor protein
941	 67.00	0	1046028..1046324	-	98	163850398	-	Mext_0965	-	hypothetical protein
942	 54.07	-2	1046402..1046782	+	126	163850399	-	Mext_0966	-	response regulator receiver
943	 69.51	0	1046838..1048211	+	457	163850400	-	Mext_0967	-	diguanylate cyclase
944	 70.89	0	1048229..1048702	-	157	163850401	-	Mext_0968	-	rrf2 family transcriptional regulator
945	 68.47	0	1048770..1050041	+	423	163850402	-	Mext_0969	-	nitric oxide dioxygenase
946	 68.48	0	1050069..1050233	-	54	163850403	-	Mext_0970	-	hypothetical protein
947	 75.84	+1	1050276..1050602	-	108	163850404	-	Mext_0971	-	hypothetical protein
948	 70.12	0	1050592..1050996	-	134	163850405	-	Mext_0972	-	hypothetical protein
949	 67.99	0	1051088..1052068	-	326	163850406	-	Mext_0973	-	cysteine synthase A
950	 71.75	0	1052424..1052600	-	58	163850407	-	Mext_0974	-	hypothetical protein
951	 68.25	0	1052779..1053282	-	167	163850408	-	Mext_0975	-	protein of unknown function DUF306 Meta and HslJ
952	 70.34	0	1053679..1054005	+	108	163850409	-	Mext_0976	-	hypothetical protein
953	 72.46	0	1054015..1055256	-	413	163850410	-	Mext_0977	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
954	 70.00	0	1055253..1056242	-	329	163850411	-	Mext_0978	-	LysR substrate-binding
955	 70.20	0	1056451..1057497	+	348	163850412	-	Mext_0979	-	inositol phosphatase/fructose-16-bisphosphatase
956	 65.16	0	1057645..1058505	+	286	163850413	-	Mext_0980	-	phosphoribulokinase
957	 69.17	0	1058577..1059536	-	319	163850414	-	Mext_0981	-	hypothetical protein
958	 67.30	0	1059652..1060446	-	264	163850415	-	Mext_0982	-	hypothetical protein
959	 72.28	0	1060672..1060938	+	88	163850416	-	Mext_0983	-	hypothetical protein
960	 69.62	0	1060886..1061698	-	270	163850417	-	Mext_0984	-	beta-lactamase-like protein
961	 70.48	0	1062130..1062444	+	104	163850418	-	Mext_0985	-	hypothetical protein
962	 73.49	+1	1062466..1063608	-	380	163850419	-	Mext_0986	-	hypothetical protein
963	 73.71	+1	1063608..1064984	-	458	163850420	-	Mext_0987	-	polysaccharide biosynthesis protein
964	 69.30	0	1065104..1066090	-	328	163850421	-	Mext_0988	-	hypothetical protein
965	 66.75	0	1066009..1067148	-	379	163850422	-	Mext_0989	-	OpgC protein
966	 70.47	0	1067337..1068098	-	253	163850423	-	Mext_0990	-	HAD family hydrolase
967	 69.22	0	1068092..1068796	-	234	163850424	-	Mext_0991	-	ribulose-phosphate 3-epimerase
968	 70.14	0	1068965..1069540	-	191	163850425	-	Mext_0992	-	GCN5-related N-acetyltransferase
969	 67.35	0	1069579..1071924	-	781	163850426	-	Mext_0993	-	ornithine decarboxylase
970	 74.38	+1	1072009..1072371	-	120	163850427	-	Mext_0994	-	TonB family protein
971	 69.57	0	1072639..1073259	-	206	163850428	-	Mext_0995	-	molybdenum cofactor biosynthesis protein B
972	 67.43	0	1073359..1074666	+	435	163850429	-	Mext_0996	-	adenylosuccinate lyase
973	 68.53	0	1074724..1075581	+	285	163850430	-	Mext_0997	-	aminotransferase class IV
974	 69.50	0	1075654..1075971	+	105	163850431	-	Mext_0998	-	hypothetical protein
975	 70.53	0	1076105..1077451	+	448	163850432	-	Mext_0999	-	adenylosuccinate synthase
976	 72.01	0	1077493..1078971	+	492	163850433	-	Mext_1000	-	hypothetical protein
977	 67.90	0	1079127..1080020	-	297	163850434	-	Mext_1001	-	RNA polymerase factor sigma-32
978	 69.48	0	1080285..1082378	-	697	163850435	-	Mext_1002	-	diguanylate cyclase
979	 71.65	0	1082732..1082992	+	86	163850436	-	Mext_1003	-	hypothetical protein
980	 71.71	0	1083028..1083483	-	151	163850437	-	Mext_1004	-	GCN5-related N-acetyltransferase
981	 71.03	0	1083687..1084718	-	343	163850438	-	Mext_1005	-	RluA family pseudouridine synthase
982	 67.54	0	1085219..1086253	+	344	163850439	-	Mext_1006	-	GTPase EngC
983	 70.00	0	1092733..1093902	-	389	163850440	-	Mext_1007	-	NADH dehydrogenase
984	 71.17	0	1094154..1094819	-	221	163850441	-	Mext_1008	-	hypothetical protein
985	 71.71	0	1095062..1096231	+	389	163850442	-	Mext_1009	-	major facilitator transporter
986	 72.27	0	1096315..1098492	+	725	163850443	-	Mext_1010	-	primosome assembly protein PriA
987	 62.53	-1	1098577..1098939	+	120	163850444	-	Mext_1011	-	hypothetical protein
988	 71.39	0	1099030..1099410	-	126	163850445	-	Mext_1012	-	hypothetical protein
989	 70.63	0	1099831..1100082	-	83	163850446	-	Mext_1013	-	hypothetical protein
990	 70.43	0	1100200..1101210	-	336	163850447	-	Mext_1014	-	short-chain dehydrogenase/reductase SDR
991	 67.48	0	1101357..1101968	-	203	163850448	-	Mext_1015	-	isochorismatase hydrolase
992	 65.05	0	1102001..1103173	-	390	163850449	-	Mext_1016	-	alcohol dehydrogenase
993	 72.63	0	1103303..1103956	-	217	163850450	-	Mext_1017	-	hypothetical protein
994	 64.80	0	1104132..1104989	+	285	163850451	-	Mext_1018	-	short-chain dehydrogenase/reductase SDR
995	 71.30	0	1105057..1106049	+	330	163850452	-	Mext_1019	-	short-chain dehydrogenase/reductase SDR
996	 65.00	0	1106133..1106312	+	59	163850453	-	Mext_1020	-	hypothetical protein
997	 66.67	0	1106450..1108120	-	556	163850454	-	Mext_1021	-	hypothetical protein
998	 67.42	0	1108242..1108772	-	176	163850455	-	Mext_1022	-	hypothetical protein
999	 69.39	0	1115219..1117312	+	697	163850456	-	Mext_1023	-	peptidase M23B
1000	 66.67	0	1117335..1117829	-	164	163850457	-	Mext_1024	-	hypothetical protein
1001	 69.35	0	1117914..1118807	-	297	163850458	-	Mext_1025	-	glutamyl-tRNA synthetase class Ic
1002	 71.00	0	1118838..1119137	-	99	163850459	-	Mext_1026	-	hypothetical protein
1003	 67.12	0	1119361..1119579	+	72	163850460	-	Mext_1027	-	hypothetical protein
1004	 68.79	0	1119602..1121482	-	626	163850461	-	Mext_1028	-	heat shock protein 90
1005	 64.13	-1	1121637..1121951	-	104	163850462	-	Mext_1029	-	hypothetical protein
1006	 70.61	0	1121986..1123863	+	625	163850463	-	Mext_1030	-	gamma-glutamyltransferase
1007	 75.64	+1	1123966..1125603	+	545	163850464	-	Mext_1031	-	Glycerone kinase
1008	 71.38	0	1125612..1126460	+	282	163850465	-	Mext_1032	-	methyltransferase type 11
1009	 68.37	0	1126516..1127808	+	430	163850466	-	Mext_1033	-	major facilitator transporter
1010	 75.40	+1	1127927..1129162	+	411	163850467	-	Mext_1034	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
1011	 77.45	+2	1129159..1129566	+	135	163850468	-	Mext_1035	-	putative CobE protein
1012	 69.96	0	1129654..1130745	+	363	163850469	-	Mext_1036	-	diguanylate cyclase
1013	 69.20	0	1130820..1131728	-	302	163850470	-	Mext_1037	-	LysR substrate-binding
1014	 65.32	0	1131838..1132281	+	147	163850471	-	Mext_1038	-	transmembrane pair domain-containing protein
1015	 73.53	+1	1132362..1133162	+	266	163850472	-	Mext_1039	-	precorrin-4 C11-methyltransferase
1016	 73.38	+1	1133159..1134484	+	441	163850473	-	Mext_1040	-	cobyrinic acid a,c-diamide synthase
1017	 69.23	0	1134751..1135179	-	142	163850474	-	Mext_1041	-	helix-turn-helix domain-containing protein
1018	 64.29	-1	1135630..1135965	+	111	163850475	-	Mext_1042	-	antibiotic biosynthesis monooxygenase
1019	 68.35	0	1136119..1137366	-	415	163850476	-	Mext_1043	-	major facilitator transporter
1020	 69.46	0	1137797..1139302	+	501	163850477	-	Mext_1044	-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
1021	 73.74	+1	1139306..1139899	-	197	163850478	-	Mext_1045	-	Fe2+/Zn2+ uptake regulation protein-like protein
1022	 73.03	+1	1140235..1141146	+	303	163850479	-	Mext_1046	-	ABC transporter related
1023	 70.50	0	1141143..1142030	+	295	163850480	-	Mext_1047	-	ABC-3 protein
1024	 68.54	0	1142585..1146106	+	1173	163850481	-	Mext_1048	-	DNA polymerase III, alpha subunit
1025	 70.43	0	1146416..1147213	+	265	163850482	-	Mext_1049	-	hypothetical protein
1026	 70.83	0	1147331..1148026	-	231	163850483	-	Mext_1050	-	ChaC family protein
1027	 70.45	0	1148804..1149544	+	246	163850484	-	Mext_1051	-	DNA repair protein RecO
1028	 67.96	0	1149666..1151912	+	748	163850485	-	Mext_1052	-	DNA topoisomerase IV subunit A
1029	 65.22	0	1151989..1152264	-	91	163850486	-	Mext_1053	-	translation initiation factor IF-1
1030	 75.29	+1	1152582..1153694	-	370	163850487	-	Mext_1054	-	extracellular ligand-binding receptor
1031	 71.91	0	1153864..1154187	+	107	163850488	-	Mext_1055	-	hypothetical protein
1032	 72.70	0	1154254..1154982	+	242	163850489	-	Mext_1056	-	xanthine dehydrogenase accessory factor
1033	 74.28	+1	1154987..1155997	+	336	163850490	-	Mext_1057	-	molybdopterin binding domain-containing protein
1034	 75.76	+1	1155984..1156577	+	197	163850491	-	Mext_1058	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1035	 69.14	0	1156585..1156746	-	53	163850492	-	Mext_1059	-	hypothetical protein
1036	 70.24	0	1156751..1157617	-	288	163850493	-	Mext_1060	-	formyl transferase domain-containing protein
1037	 73.47	+1	1157782..1158516	+	244	163850494	-	Mext_1061	-	short-chain dehydrogenase/reductase SDR
68.64	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.