IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.64   STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
866	 73.05	+1	965432..966637	+	401	163850323	-	Mext_0890	-	major facilitator transporter
867	 70.15	0	966821..967969	+	382	163850324	-	Mext_0891	-	hypothetical protein
868	 67.50	0	968003..968839	+	278	163850325	-	Mext_0892	-	ABC transporter related
869	 69.90	0	968911..969993	+	360	163850326	-	Mext_0893	-	hypothetical protein
870	 71.63	0	970114..970737	+	207	163850327	-	Mext_0894	-	hypothetical protein
871	 73.99	+1	970802..971620	-	272	163850328	-	Mext_0895	-	inositol monophosphatase
872	 71.66	0	971986..972486	+	166	163850329	-	Mext_0896	-	hypothetical protein
873	 72.13	0	972733..973683	-	316	163850330	-	Mext_0897	-	4-hydroxybenzoate polyprenyl transferase
874	 67.83	0	973719..974321	-	200	163850331	-	Mext_0898	-	putative signal peptide
875	 72.24	0	974629..975381	+	250	163850332	-	Mext_0899	-	hypothetical protein
876	 72.26	0	975411..976394	+	327	163850333	-	Mext_0900	-	asparaginase/glutaminase
877	 70.02	0	976581..977951	+	456	163850334	-	Mext_0901	-	glutamate--cysteine ligase
878	 71.05	0	978063..978473	+	136	163850335	-	Mext_0902	-	hypothetical protein
879	 74.74	+1	978535..978819	+	94	163850336	-	Mext_0903	-	SirA family protein
880	 70.19	0	978859..979425	+	188	163850337	-	Mext_0904	-	NUDIX hydrolase
881	 66.67	0	979882..980280	+	132	163850338	-	Mext_0905	-	hypothetical protein
882	 70.98	0	980430..980870	-	146	163850339	-	Mext_0906	-	hypothetical protein
883	 70.85	0	981116..981808	-	230	163850340	-	Mext_0907	-	putative transmembrane signal peptide protein
884	 71.36	0	981805..982017	-	70	163850341	-	Mext_0908	-	hypothetical protein
885	 69.62	0	982072..982749	-	225	163850342	-	Mext_0909	-	hypothetical protein
886	 74.88	+1	982764..983591	-	275	163850343	-	Mext_0910	-	cobalamin 5'-phosphate synthase
887	 73.22	+1	983759..984796	+	345	163850344	-	Mext_0911	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
888	 69.91	0	984803..986344	-	513	163850345	-	Mext_0912	-	ATPase domain-containing protein
889	 68.86	0	986687..987142	+	151	163850346	-	Mext_0913	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
890	 71.13	0	987178..989373	+	731	163850347	-	Mext_0914	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
891	 70.08	0	989554..992952	+	1132	163850348	-	Mext_0915	-	PAS sensor protein
892	 74.48	+1	993040..994281	-	413	163850349	-	Mext_0916	-	amidase
893	 70.61	0	994389..995378	+	329	163850350	-	Mext_0917	-	extensin family protein
894	 69.23	0	995559..996026	+	155	163850351	-	Mext_0918	-	hypothetical protein
895	 71.56	0	996126..996800	+	224	163850352	-	Mext_0919	-	ribonuclease T2
896	 69.89	0	997278..998084	+	268	163850353	-	Mext_0920	-	hypothetical protein
897	 69.63	0	998101..998370	-	89	163850354	-	Mext_0921	-	hypothetical protein
898	 71.43	0	998385..998615	-	76	163850355	-	Mext_0922	-	hypothetical protein
899	 68.27	0	998720..1000153	-	477	163850356	-	Mext_0923	-	FAD linked oxidase domain-containing protein
900	 66.12	0	1000469..1000831	+	120	163850357	-	Mext_0924	-	cytochrome c class I
901	 67.01	0	1000928..1001515	-	195	163850358	-	Mext_0925	-	regulatory protein MarR
902	 73.10	+1	1001959..1002564	-	201	163850359	-	Mext_0926	-	hypothetical protein
903	 74.04	+1	1002561..1003292	-	243	163850360	-	Mext_0927	-	hypothetical protein
904	 67.05	0	1003303..1005657	-	784	163850361	-	Mext_0928	-	1A family penicillin-binding protein
905	 71.83	0	1005911..1006375	+	154	163850362	-	Mext_0929	-	hypothetical protein
906	 71.84	0	1006385..1007041	-	218	163850363	-	Mext_0930	-	GCN5-related N-acetyltransferase
907	 59.42	-2	1007319..1007870	+	183	163850364	-	Mext_0931	-	TadE family protein
908	 66.91	0	1007870..1008703	+	277	163850365	-	Mext_0932	-	hypothetical protein
909	 58.16	-2	1008700..1010121	+	473	163850366	-	Mext_0933	-	hypothetical protein
910	 69.71	0	1010378..1011592	+	404	163850367	-	Mext_0934	-	AFG1 family ATPase
911	 72.57	0	1011589..1012215	-	208	163850368	-	Mext_0935	-	DNA-3-methyladenine glycosylase
912	 71.76	0	1012288..1012974	-	228	163850369	-	Mext_0936	-	ribonuclease H
913	 70.61	0	1013027..1013812	-	261	163850370	-	Mext_0937	-	hypothetical protein
914	 70.55	0	1014525..1014833	+	102	163850371	-	Mext_0938	-	hypothetical protein
915	 68.02	0	1015136..1016098	+	320	163850372	-	Mext_0939	-	glutathione synthetase
916	 71.23	0	1016970..1018547	-	525	163850373	-	Mext_0940	-	sodium/hydrogen exchanger
917	 72.24	0	1018645..1019397	-	250	163850374	-	Mext_0941	-	N-acetylmuramoyl-L-alanine amidase
918	 73.69	+1	1019394..1020119	-	241	163850375	-	Mext_0942	-	heat shock protein DnaJ domain-containing protein
919	 75.19	+1	1020322..1020591	-	89	163850376	-	Mext_0943	-	hypothetical protein
920	 68.86	0	1020823..1021461	+	212	163850377	-	Mext_0944	-	UreE urease accessory domain-containing protein
921	 65.52	0	1021495..1021755	-	86	163850378	-	Mext_0945	-	hypothetical protein
922	 70.05	0	1022583..1023647	+	354	163850379	-	Mext_0946	-	tRNA-dihydrouridine synthase A
923	 69.51	0	1023687..1025831	-	714	163850380	-	Mext_0947	-	diguanylate cyclase
924	 64.46	-1	1026146..1026598	-	150	163850381	-	Mext_0948	-	response regulator receiver
925	 61.54	-1	1026660..1027127	-	155	163850382	-	Mext_0949	-	BLUF domain-containing protein
926	 65.51	0	1027362..1028744	+	460	163850383	-	Mext_0950	-	hypothetical protein
927	 71.88	0	1028771..1030669	+	632	163850384	-	Mext_0951	-	flagellar hook-associated protein FlgK
928	 69.73	0	1030684..1032477	+	597	163850385	-	Mext_0952	-	hypothetical protein
929	 70.70	0	1032577..1033890	-	437	163850386	-	Mext_0953	-	hypothetical protein
930	 73.18	+1	1034415..1035305	-	296	163850387	-	Mext_0954	-	protein-(glutamine-N5) methyltransferase, release factor-specific
931	 69.06	0	1035320..1036405	-	361	163850388	-	Mext_0955	-	peptide chain release factor 1
932	 71.21	0	1036600..1037259	-	219	163850389	-	Mext_0956	-	hypothetical protein
933	 70.11	0	1037305..1039566	-	753	163850390	-	Mext_0957	-	phosphoenolpyruvate-protein phosphotransferase
934	 67.39	0	1039638..1040873	-	411	163850391	-	Mext_0958	-	aspartate kinase
935	 69.51	0	1041254..1041991	+	245	163850392	-	Mext_0959	-	ubiquinone biosynthesis O-methyltransferase
936	 73.30	+1	1042067..1042639	+	190	163850393	-	Mext_0960	-	PEBP family protein
937	 71.05	0	1042776..1043756	+	326	163850394	-	Mext_0961	-	alcohol dehydrogenase
938	 71.75	0	1043998..1044567	-	189	163850395	-	Mext_0962	-	crossover junction endodeoxyribonuclease RuvC
939	 65.58	0	1044657..1045298	-	213	163850396	-	Mext_0963	-	YceI family protein
940	 70.65	0	1045385..1046011	+	208	163850397	-	Mext_0964	-	Holliday junction DNA helicase motor protein
941	 67.00	0	1046028..1046324	-	98	163850398	-	Mext_0965	-	hypothetical protein
942	 54.07	-2	1046402..1046782	+	126	163850399	-	Mext_0966	-	response regulator receiver
943	 69.51	0	1046838..1048211	+	457	163850400	-	Mext_0967	-	diguanylate cyclase
944	 70.89	0	1048229..1048702	-	157	163850401	-	Mext_0968	-	rrf2 family transcriptional regulator
945	 68.47	0	1048770..1050041	+	423	163850402	-	Mext_0969	-	nitric oxide dioxygenase
946	 68.48	0	1050069..1050233	-	54	163850403	-	Mext_0970	-	hypothetical protein
947	 75.84	+1	1050276..1050602	-	108	163850404	-	Mext_0971	-	hypothetical protein
948	 70.12	0	1050592..1050996	-	134	163850405	-	Mext_0972	-	hypothetical protein
949	 67.99	0	1051088..1052068	-	326	163850406	-	Mext_0973	-	cysteine synthase A
950	 71.75	0	1052424..1052600	-	58	163850407	-	Mext_0974	-	hypothetical protein
951	 68.25	0	1052779..1053282	-	167	163850408	-	Mext_0975	-	protein of unknown function DUF306 Meta and HslJ
952	 70.34	0	1053679..1054005	+	108	163850409	-	Mext_0976	-	hypothetical protein
953	 72.46	0	1054015..1055256	-	413	163850410	-	Mext_0977	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
954	 70.00	0	1055253..1056242	-	329	163850411	-	Mext_0978	-	LysR substrate-binding
955	 70.20	0	1056451..1057497	+	348	163850412	-	Mext_0979	-	inositol phosphatase/fructose-16-bisphosphatase
956	 65.16	0	1057645..1058505	+	286	163850413	-	Mext_0980	-	phosphoribulokinase
957	 69.17	0	1058577..1059536	-	319	163850414	-	Mext_0981	-	hypothetical protein
958	 67.30	0	1059652..1060446	-	264	163850415	-	Mext_0982	-	hypothetical protein
959	 72.28	0	1060672..1060938	+	88	163850416	-	Mext_0983	-	hypothetical protein
960	 69.62	0	1060886..1061698	-	270	163850417	-	Mext_0984	-	beta-lactamase-like protein
961	 70.48	0	1062130..1062444	+	104	163850418	-	Mext_0985	-	hypothetical protein
962	 73.49	+1	1062466..1063608	-	380	163850419	-	Mext_0986	-	hypothetical protein
963	 73.71	+1	1063608..1064984	-	458	163850420	-	Mext_0987	-	polysaccharide biosynthesis protein
964	 69.30	0	1065104..1066090	-	328	163850421	-	Mext_0988	-	hypothetical protein
965	 66.75	0	1066009..1067148	-	379	163850422	-	Mext_0989	-	OpgC protein
68.64	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.