IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
546	 69.87	0	609600..611003	+	467	163850003	-	Mext_0560	-	aminodeoxychorismate lyase
547	 72.16	0	611033..611779	-	248	163850004	-	Mext_0561	-	HAD family hydrolase
548	 65.58	0	611763..614150	-	795	163850005	-	Mext_0562	-	Kojibiose phosphorylase
549	 67.66	0	615009..616211	+	400	163850006	-	Mext_0563	-	acetate kinase
550	 68.99	0	616208..617239	+	343	163850007	-	Mext_0564	-	secretion protein HlyD family protein
551	 68.24	0	617247..619985	+	912	163850008	-	Mext_0565	-	ABC transporter related
552	 66.83	0	619987..621186	+	399	163850009	-	Mext_0566	-	ABC-2 type transporter
553	 66.91	0	621266..623701	+	811	163850010	-	Mext_0567	-	putative phosphoketolase
554	 72.06	0	623825..624955	+	376	163850011	-	Mext_0568	-	monooxygenase FAD-binding
555	 70.92	0	625248..626423	+	391	163850012	-	Mext_0569	-	ABC transporter related
556	 67.64	0	626526..627551	+	341	163850013	-	Mext_0570	-	extracellular solute-binding protein
557	 71.87	0	627628..629280	+	550	163850014	-	Mext_0571	-	binding-protein-dependent transport systems inner membrane component
558	 62.72	-1	629703..630158	-	151	163850015	-	Mext_0572	-	hypothetical protein
559	 66.94	0	630242..630967	-	241	163850016	-	Mext_0573	-	hypothetical protein
560	 71.84	0	631127..632092	+	321	163850017	-	Mext_0574	-	kelch repeat-containing protein
561	 75.02	+1	632180..633508	+	442	163850018	-	Mext_0575	-	amine oxidase
562	 67.61	0	633617..634252	+	211	163850019	-	Mext_0576	-	cyclic nucleotide-binding
563	 69.52	0	634256..634675	-	139	163850020	-	Mext_0577	-	cupin 2 domain-containing protein
564	 69.54	0	634913..635086	+	57	163850021	-	Mext_0578	-	hypothetical protein
565	 69.07	0	635513..635803	-	96	163850022	-	Mext_0579	-	hypothetical protein
566	 64.79	0	636438..637505	+	355	163850023	-	Mext_0581	-	sulfate ABC transporter, periplasmic sulfate-binding protein
567	 67.60	0	637510..638364	+	284	163850024	-	Mext_0582	-	sulfate ABC transporter, inner membrane subunit CysT
568	 66.45	0	638357..639259	+	300	163850025	-	Mext_0583	-	sulfate ABC transporter, inner membrane subunit CysW
569	 68.19	0	639261..640307	+	348	163850026	-	Mext_0584	-	sulfate ABC transporter, ATPase subunit
570	 66.09	0	646766..647287	-	173	163850027	-	Mext_0585	-	hypothetical protein
571	 65.07	0	647308..648120	+	270	163850028	-	Mext_0586	-	endonuclease III
572	 62.52	-1	648314..649108	+	264	163850029	-	Mext_0587	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
573	 70.95	0	649115..650770	-	551	163850030	-	Mext_0588	-	glycosyl transferase family protein
574	 70.66	0	650767..652821	-	684	163850031	-	Mext_0589	-	glycosyl transferase family protein
575	 72.04	0	652880..653512	-	210	163850032	-	Mext_0590	-	hypothetical protein
576	 66.30	0	653573..654115	-	180	163850033	-	Mext_0591	-	invasion associated locus B family protein
577	 71.08	0	654274..654771	+	165	163850034	-	Mext_0592	-	hypothetical protein
578	 71.39	0	654858..655640	-	260	163850035	-	Mext_0593	-	hypothetical protein
579	 67.87	0	655679..656923	-	414	163850036	-	Mext_0594	-	polyhydroxyalkanoate depolymerase, intracellular
580	 69.03	0	657069..658463	+	464	163850037	-	Mext_0595	-	ATPase domain-containing protein
581	 68.25	0	658473..659102	+	209	163850038	-	Mext_0596	-	response regulator receiver
582	 68.00	0	659284..659508	+	74	163850039	-	Mext_0597	-	hypothetical protein
583	 63.33	-1	659700..659939	+	79	163850040	-	Mext_0598	-	phosphoribosylformylglycinamidine synthase, purS
584	 68.72	0	659939..660619	+	226	163850041	-	Mext_0599	-	phosphoribosylformylglycinamidine synthase I
585	 67.58	0	660745..661290	-	181	163850042	-	Mext_0600	-	adenine phosphoribosyltransferase
586	 70.19	0	661373..662167	-	264	163850043	-	Mext_0601	-	inositol-phosphate phosphatase
587	 75.24	+1	662450..663067	-	205	163850044	-	Mext_0602	-	thiamine monophosphate synthase
588	 70.80	0	663074..663895	-	273	163850045	-	Mext_0603	-	thiazole biosynthesis family protein
589	 68.08	0	663898..664110	-	70	163850046	-	Mext_0604	-	thiamine biosynthesis protein ThiS
590	 72.71	0	664107..665429	-	440	163850047	-	Mext_0605	-	glycine oxidase ThiO
591	 68.74	0	665667..667067	-	466	163850048	-	Mext_0606	-	adenylyl cyclase class-3/4/guanylyl cyclase
592	 62.60	-1	667238..667606	+	122	163850049	-	Mext_0607	-	hypothetical protein
593	 70.05	0	667898..668902	+	334	163850050	-	Mext_0608	-	helix-turn-helix domain-containing protein
594	 73.96	+1	668911..670254	+	447	163850051	-	Mext_0609	-	major facilitator transporter
595	 65.74	0	670299..672455	-	718	163850052	-	Mext_0610	-	RNA polymerase sigma factor RpoD
596	 70.25	0	672501..674426	-	641	163850053	-	Mext_0611	-	DNA primase
597	 70.11	0	674561..675547	+	328	163850054	-	Mext_0612	-	gluconolactonase
598	 70.78	0	675544..676710	+	388	163850055	-	Mext_0613	-	hypothetical protein
599	 67.54	0	676898..677356	-	152	163850056	-	Mext_0614	-	GatB/YqeY
600	 69.38	0	677546..678796	+	416	163850057	-	Mext_0615	-	carbamoyl-phosphate synthase, small subunit
601	 68.00	0	678935..679309	+	124	163850058	-	Mext_0616	-	hypothetical protein
602	 73.39	+1	679350..682025	-	891	163850059	-	Mext_0617	-	hypothetical protein
603	 67.95	0	682183..682572	+	129	163850060	-	Mext_0618	-	flagellar basal body rod protein FlgB
604	 68.59	0	682569..682985	+	138	163850061	-	Mext_0619	-	flagellar basal body rod protein FlgC
605	 71.47	0	682999..683352	+	117	163850062	-	Mext_0620	-	flagellar hook-basal body complex protein FliE
606	 66.67	0	683445..684233	+	262	163850063	-	Mext_0621	-	flagellar basal body rod protein FlgG
607	 71.11	0	684299..684793	+	164	163850064	-	Mext_0622	-	FlgA, flagellar basal-body P-ring formation protein
608	 70.39	0	684790..685917	+	375	163850065	-	Mext_0623	-	flagellar basal body P-ring protein
609	 70.94	0	685917..686501	+	194	163850066	-	Mext_0624	-	hypothetical protein
610	 69.77	0	686501..687208	+	235	163850067	-	Mext_0625	-	flagellar L-ring protein
611	 68.53	0	687291..687773	+	160	163850068	-	Mext_0626	-	flagellar basal body-associated protein FliL
612	 65.52	0	687770..688552	+	260	163850069	-	Mext_0627	-	flagellar biosynthesis protein FliP
613	 65.80	0	688714..688944	-	76	163850070	-	Mext_0628	-	hypothetical protein
614	 69.23	0	689058..690737	+	559	163850071	-	Mext_0629	-	flagellar MS-ring protein
615	 75.58	+1	690737..691465	+	242	163850072	-	Mext_0630	-	hypothetical protein
616	 71.14	0	691467..692873	+	468	163850073	-	Mext_0631	-	OmpA/MotB domain-containing protein
617	 72.81	+1	692870..694252	+	460	163850074	-	Mext_0632	-	chemotaxis protein
618	 74.67	+1	694709..696145	+	478	163850075	-	Mext_0633	-	hypothetical protein
619	 67.22	0	696228..696767	+	179	163850076	-	Mext_0634	-	lytic transglycosylase catalytic
620	 66.24	0	696775..697476	-	233	163850077	-	Mext_0635	-	transcriptional regulator domain-containing protein
621	 66.67	0	697698..698144	-	148	163850078	-	Mext_0636	-	hypothetical protein
622	 66.01	0	698141..699202	-	353	163850079	-	Mext_0637	-	flagellar biosynthesis protein FlhB
623	 68.61	0	699246..700325	-	359	163850080	-	Mext_0638	-	flagellar motor switch protein FliG
624	 69.72	0	700348..700674	-	108	163850081	-	Mext_0639	-	flagellar motor switch protein FliN
625	 66.67	0	700875..701147	+	90	163850082	-	Mext_0640	-	hypothetical protein
626	 72.05	0	701161..701457	-	98	163850083	-	Mext_0641	-	hypothetical protein
627	 70.43	0	701441..702475	-	344	163850084	-	Mext_0642	-	flagellar motor switch protein FliM
628	 65.64	0	702490..703365	-	291	163850085	-	Mext_0643	-	chemotaxis MotA protein
629	 68.81	0	703563..704123	+	186	163850086	-	Mext_0644	-	ATP-dependent protease peptidase subunit
630	 68.04	0	704235..705548	+	437	163850087	-	Mext_0645	-	ATP-dependent protease ATP-binding subunit
631	 73.85	+1	705551..706441	+	296	163850088	-	Mext_0646	-	hypothetical protein
632	 71.00	0	706475..707536	-	353	163850089	-	Mext_0647	-	hypothetical protein
633	 70.17	0	707586..708671	-	361	163850090	-	Mext_0648	-	Rieske (2Fe-2S) domain-containing protein
634	 72.04	0	709233..709697	-	154	163850091	-	Mext_0649	-	hypothetical protein
635	 69.49	0	710075..710464	+	129	163850092	-	Mext_0650	-	hypothetical protein
636	 68.20	0	710483..712045	+	520	163850093	-	Mext_0651	-	signal recognition particle protein
637	 60.92	-1	712042..712389	+	115	163850094	-	Mext_0652	-	chorismate mutase
638	 71.07	0	712389..712751	+	120	163850095	-	Mext_0653	-	ribosomal protein S16
639	 72.77	0	712875..713546	+	223	163850096	-	Mext_0654	-	16S rRNA processing protein RimM
640	 68.55	0	713554..714348	-	264	163850097	-	Mext_0655	-	hypothetical protein
641	 71.65	0	714417..715259	-	280	163850098	-	Mext_0656	-	methyltransferase type 11
642	 73.53	+1	715270..715575	+	101	163850099	-	Mext_0657	-	hypothetical protein
643	 73.72	+1	715684..716406	+	240	163850100	-	Mext_0658	-	tRNA (guanine-N1)-methyltransferase
644	 69.22	0	716580..717755	+	391	163850101	-	Mext_0659	-	phosphoserine aminotransferase
645	 67.23	0	717913..719520	+	535	163850102	-	Mext_0660	-	D-3-phosphoglycerate dehydrogenase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.