IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
516	 67.51	0	578813..579877	+	354	163849973	-	Mext_0530	-	helix-turn-helix domain-containing protein
517	 64.84	0	580688..581725	+	345	163849974	-	Mext_0531	-	hypothetical protein
518	 62.54	-1	581806..582096	-	96	163849975	-	Mext_0532	-	hypothetical protein
519	 62.27	-1	582224..582496	-	90	163849976	-	Mext_0533	-	Na+/H+ antiporter
520	 63.85	-1	582663..583124	-	153	163849977	-	Mext_0534	-	hypothetical protein
521	 63.75	-1	583860..584168	-	102	163849978	-	Mext_0535	-	hypothetical protein
522	 62.25	-1	584530..584778	-	82	163849979	-	Mext_0536	-	hypothetical protein
523	 61.34	-1	585179..586042	-	287	163849980	-	Mext_0537	-	peptidase M23B
524	 60.36	-1	586445..586777	+	110	163849981	-	Mext_0538	-	hypothetical protein
525	 70.48	0	586872..587291	+	139	163849982	-	Mext_0539	-	hypothetical protein
526	 69.70	0	587437..587733	+	98	163849983	-	Mext_0540	-	hypothetical protein
527	 66.67	0	588418..589326	+	302	163849984	-	Mext_0541	-	hypothetical protein
528	 71.10	0	589405..592041	+	878	163849985	-	Mext_0542	-	aminopeptidase N
529	 69.25	0	592227..594587	+	786	163849986	-	Mext_0543	-	PAS sensor protein
530	 70.66	0	594996..595922	+	308	163849987	-	Mext_0544	-	arginase
531	 67.79	0	595986..597593	-	535	163849988	-	Mext_0545	-	glucose-6-phosphate 1-dehydrogenase
532	 63.26	-1	597734..598291	-	185	163849989	-	Mext_0546	-	hypothetical protein
533	 67.28	0	598561..598722	+	53	163849990	-	Mext_0547	-	hypothetical protein
534	 68.52	0	598802..599125	-	107	163849991	-	Mext_0548	-	CutA1 divalent ion tolerance protein
535	 68.22	0	599230..600000	+	256	163849992	-	Mext_0549	-	NAD(+) kinase
536	 71.93	0	600069..600296	-	75	163849993	-	Mext_0550	-	hypothetical protein
537	 73.71	+1	600473..601750	+	425	163849994	-	Mext_0551	-	Fmu (Sun) domain-containing protein
538	 69.09	0	601810..601974	-	54	163849995	-	Mext_0552	-	hypothetical protein
539	 66.47	0	602321..603355	+	344	163849996	-	Mext_0553	-	hypothetical protein
540	 72.03	0	603725..604918	+	397	163849997	-	Mext_0554	-	aminotransferase class I and II
541	 68.18	0	604979..605308	-	109	163849998	-	Mext_0555	-	hypothetical protein
542	 71.92	0	605654..606586	+	310	163849999	-	Mext_0556	-	malonyl CoA-acyl carrier protein transacylase
543	 69.77	0	606696..607436	+	246	163850000	-	Mext_0557	-	3-oxoacyl-(acyl-carrier-protein) reductase
544	 60.76	-1	607700..607936	+	78	163850001	-	Mext_0558	-	acyl carrier protein
545	 68.17	0	608075..609337	+	420	163850002	-	Mext_0559	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
546	 69.87	0	609600..611003	+	467	163850003	-	Mext_0560	-	aminodeoxychorismate lyase
547	 72.16	0	611033..611779	-	248	163850004	-	Mext_0561	-	HAD family hydrolase
548	 65.58	0	611763..614150	-	795	163850005	-	Mext_0562	-	Kojibiose phosphorylase
549	 67.66	0	615009..616211	+	400	163850006	-	Mext_0563	-	acetate kinase
550	 68.99	0	616208..617239	+	343	163850007	-	Mext_0564	-	secretion protein HlyD family protein
551	 68.24	0	617247..619985	+	912	163850008	-	Mext_0565	-	ABC transporter related
552	 66.83	0	619987..621186	+	399	163850009	-	Mext_0566	-	ABC-2 type transporter
553	 66.91	0	621266..623701	+	811	163850010	-	Mext_0567	-	putative phosphoketolase
554	 72.06	0	623825..624955	+	376	163850011	-	Mext_0568	-	monooxygenase FAD-binding
555	 70.92	0	625248..626423	+	391	163850012	-	Mext_0569	-	ABC transporter related
556	 67.64	0	626526..627551	+	341	163850013	-	Mext_0570	-	extracellular solute-binding protein
557	 71.87	0	627628..629280	+	550	163850014	-	Mext_0571	-	binding-protein-dependent transport systems inner membrane component
558	 62.72	-1	629703..630158	-	151	163850015	-	Mext_0572	-	hypothetical protein
559	 66.94	0	630242..630967	-	241	163850016	-	Mext_0573	-	hypothetical protein
560	 71.84	0	631127..632092	+	321	163850017	-	Mext_0574	-	kelch repeat-containing protein
561	 75.02	+1	632180..633508	+	442	163850018	-	Mext_0575	-	amine oxidase
562	 67.61	0	633617..634252	+	211	163850019	-	Mext_0576	-	cyclic nucleotide-binding
563	 69.52	0	634256..634675	-	139	163850020	-	Mext_0577	-	cupin 2 domain-containing protein
564	 69.54	0	634913..635086	+	57	163850021	-	Mext_0578	-	hypothetical protein
565	 69.07	0	635513..635803	-	96	163850022	-	Mext_0579	-	hypothetical protein
566	 64.79	0	636438..637505	+	355	163850023	-	Mext_0581	-	sulfate ABC transporter, periplasmic sulfate-binding protein
567	 67.60	0	637510..638364	+	284	163850024	-	Mext_0582	-	sulfate ABC transporter, inner membrane subunit CysT
568	 66.45	0	638357..639259	+	300	163850025	-	Mext_0583	-	sulfate ABC transporter, inner membrane subunit CysW
569	 68.19	0	639261..640307	+	348	163850026	-	Mext_0584	-	sulfate ABC transporter, ATPase subunit
570	 66.09	0	646766..647287	-	173	163850027	-	Mext_0585	-	hypothetical protein
571	 65.07	0	647308..648120	+	270	163850028	-	Mext_0586	-	endonuclease III
572	 62.52	-1	648314..649108	+	264	163850029	-	Mext_0587	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
573	 70.95	0	649115..650770	-	551	163850030	-	Mext_0588	-	glycosyl transferase family protein
574	 70.66	0	650767..652821	-	684	163850031	-	Mext_0589	-	glycosyl transferase family protein
575	 72.04	0	652880..653512	-	210	163850032	-	Mext_0590	-	hypothetical protein
576	 66.30	0	653573..654115	-	180	163850033	-	Mext_0591	-	invasion associated locus B family protein
577	 71.08	0	654274..654771	+	165	163850034	-	Mext_0592	-	hypothetical protein
578	 71.39	0	654858..655640	-	260	163850035	-	Mext_0593	-	hypothetical protein
579	 67.87	0	655679..656923	-	414	163850036	-	Mext_0594	-	polyhydroxyalkanoate depolymerase, intracellular
580	 69.03	0	657069..658463	+	464	163850037	-	Mext_0595	-	ATPase domain-containing protein
581	 68.25	0	658473..659102	+	209	163850038	-	Mext_0596	-	response regulator receiver
582	 68.00	0	659284..659508	+	74	163850039	-	Mext_0597	-	hypothetical protein
583	 63.33	-1	659700..659939	+	79	163850040	-	Mext_0598	-	phosphoribosylformylglycinamidine synthase, purS
584	 68.72	0	659939..660619	+	226	163850041	-	Mext_0599	-	phosphoribosylformylglycinamidine synthase I
585	 67.58	0	660745..661290	-	181	163850042	-	Mext_0600	-	adenine phosphoribosyltransferase
586	 70.19	0	661373..662167	-	264	163850043	-	Mext_0601	-	inositol-phosphate phosphatase
587	 75.24	+1	662450..663067	-	205	163850044	-	Mext_0602	-	thiamine monophosphate synthase
588	 70.80	0	663074..663895	-	273	163850045	-	Mext_0603	-	thiazole biosynthesis family protein
589	 68.08	0	663898..664110	-	70	163850046	-	Mext_0604	-	thiamine biosynthesis protein ThiS
590	 72.71	0	664107..665429	-	440	163850047	-	Mext_0605	-	glycine oxidase ThiO
591	 68.74	0	665667..667067	-	466	163850048	-	Mext_0606	-	adenylyl cyclase class-3/4/guanylyl cyclase
592	 62.60	-1	667238..667606	+	122	163850049	-	Mext_0607	-	hypothetical protein
593	 70.05	0	667898..668902	+	334	163850050	-	Mext_0608	-	helix-turn-helix domain-containing protein
594	 73.96	+1	668911..670254	+	447	163850051	-	Mext_0609	-	major facilitator transporter
595	 65.74	0	670299..672455	-	718	163850052	-	Mext_0610	-	RNA polymerase sigma factor RpoD
596	 70.25	0	672501..674426	-	641	163850053	-	Mext_0611	-	DNA primase
597	 70.11	0	674561..675547	+	328	163850054	-	Mext_0612	-	gluconolactonase
598	 70.78	0	675544..676710	+	388	163850055	-	Mext_0613	-	hypothetical protein
599	 67.54	0	676898..677356	-	152	163850056	-	Mext_0614	-	GatB/YqeY
600	 69.38	0	677546..678796	+	416	163850057	-	Mext_0615	-	carbamoyl-phosphate synthase, small subunit
601	 68.00	0	678935..679309	+	124	163850058	-	Mext_0616	-	hypothetical protein
602	 73.39	+1	679350..682025	-	891	163850059	-	Mext_0617	-	hypothetical protein
603	 67.95	0	682183..682572	+	129	163850060	-	Mext_0618	-	flagellar basal body rod protein FlgB
604	 68.59	0	682569..682985	+	138	163850061	-	Mext_0619	-	flagellar basal body rod protein FlgC
605	 71.47	0	682999..683352	+	117	163850062	-	Mext_0620	-	flagellar hook-basal body complex protein FliE
606	 66.67	0	683445..684233	+	262	163850063	-	Mext_0621	-	flagellar basal body rod protein FlgG
607	 71.11	0	684299..684793	+	164	163850064	-	Mext_0622	-	FlgA, flagellar basal-body P-ring formation protein
608	 70.39	0	684790..685917	+	375	163850065	-	Mext_0623	-	flagellar basal body P-ring protein
609	 70.94	0	685917..686501	+	194	163850066	-	Mext_0624	-	hypothetical protein
610	 69.77	0	686501..687208	+	235	163850067	-	Mext_0625	-	flagellar L-ring protein
611	 68.53	0	687291..687773	+	160	163850068	-	Mext_0626	-	flagellar basal body-associated protein FliL
612	 65.52	0	687770..688552	+	260	163850069	-	Mext_0627	-	flagellar biosynthesis protein FliP
613	 65.80	0	688714..688944	-	76	163850070	-	Mext_0628	-	hypothetical protein
614	 69.23	0	689058..690737	+	559	163850071	-	Mext_0629	-	flagellar MS-ring protein
615	 75.58	+1	690737..691465	+	242	163850072	-	Mext_0630	-	hypothetical protein
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.