IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
453	 63.02	-1	501034..501966	-	310	163849910	-	Mext_0461	-	regulatory protein LysR
454	 63.21	-1	502108..503439	+	443	163849911	-	Mext_0462	-	sodium:dicarboxylate symporter
455	 66.07	0	503504..504667	+	387	163849912	-	Mext_0463	-	mandelate racemase/muconate lactonizing protein
456	 62.56	-1	504774..505382	+	202	163849913	-	Mext_0464	-	glyoxalase/bleomycin resistance protein/dioxygenase
457	 64.12	-1	505493..505885	+	130	163849914	-	Mext_0465	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
458	 65.23	0	505929..506693	+	254	163849915	-	Mext_0466	-	hypothetical protein
459	 62.76	-1	506699..507466	+	255	163849916	-	Mext_0467	-	hypothetical protein
460	 58.97	-2	508251..508562	+	103	163849917	-	Mext_0468	-	hypothetical protein
461	 60.99	-1	508806..509087	-	93	163849918	-	Mext_0469	-	hypothetical protein
462	 65.72	0	509166..515303	+	2045	163849919	-	Mext_0470	-	hypothetical protein
463	 68.42	0	515701..516042	+	113	163849920	-	Mext_0471	-	hypothetical protein
464	 62.22	-1	516226..516630	+	134	163849921	-	Mext_0472	-	hypothetical protein
465	 59.52	-2	516906..518039	-	377	163849922	-	Mext_0473	-	integrase family protein
466	 53.74	-2	518691..521003	-	770	163849923	-	Mext_0474	-	hypothetical protein
467	 63.11	-1	522568..523185	-	205	163849924	-	Mext_0478	-	regulatory protein MerR
468	 58.84	-2	524101..524445	-	114	163849925	-	Mext_0479	-	TM2 domain-containing protein
469	 62.86	-1	524921..526312	+	463	163849926	-	Mext_0481	-	integrase catalytic region
470	 41.45	-2	526452..526919	-	155	163849927	-	Mext_0482	-	hypothetical protein
471	 58.56	-2	527114..527545	-	143	163849928	-	Mext_0483	-	ribonuclease H
472	 64.59	0	528568..529146	-	192	163849929	-	Mext_0484	-	hypothetical protein
473	 67.57	0	529146..530366	-	406	163849930	-	Mext_0485	-	hypothetical protein
474	 64.77	0	530424..531320	+	298	163849931	-	Mext_0486	-	LysR substrate-binding
475	 64.17	-1	531608..532087	-	159	163849932	-	Mext_0487	-	multimeric flavodoxin
476	 59.26	-2	532197..532439	-	80	163849933	-	Mext_0488	-	hypothetical protein
477	 62.39	-1	533775..534593	+	272	163849934	-	Mext_0489	-	UspA domain-containing protein
478	 59.15	-2	535771..535983	-	70	163849935	-	Mext_0491	-	hypothetical protein
479	 59.68	-2	536033..536533	-	166	163849936	-	Mext_0492	-	hypothetical protein
480	 61.73	-1	536930..537253	+	107	163849937	-	Mext_0493	-	hypothetical protein
481	 64.58	0	537456..537647	+	63	163849938	-	Mext_0494	-	hypothetical protein
482	 67.94	0	537817..539541	+	574	163849939	-	Mext_0495	-	diguanylate cyclase
483	 59.79	-2	540368..540658	+	96	163849940	-	Mext_0496	-	hypothetical protein
484	 60.95	-1	540990..541199	+	69	163849941	-	Mext_0497	-	hypothetical protein
485	 61.03	-1	541630..542445	-	271	163849942	-	Mext_0498	-	hypothetical protein
486	 58.48	-2	542458..543459	-	333	163849943	-	Mext_0499	-	hypothetical protein
487	 67.52	0	543899..544837	-	312	163849944	-	Mext_0500	-	hypothetical protein
488	 65.10	0	544837..545601	-	254	163849945	-	Mext_0501	-	methyltransferase type 12
489	 72.28	0	545598..546203	-	201	163849946	-	Mext_0502	-	phosphoglycerate mutase
490	 69.51	0	546200..547291	-	363	163849947	-	Mext_0503	-	myo-inositol-1-phosphate synthase
491	 71.15	0	547291..548361	-	356	163849948	-	Mext_0504	-	NAD-dependent epimerase/dehydratase
492	 71.75	0	548484..549605	-	373	163849949	-	Mext_0505	-	hypothetical protein
493	 71.43	0	549602..550714	-	370	163849950	-	Mext_0506	-	hypothetical protein
494	 72.37	0	550711..551832	-	373	163849951	-	Mext_0507	-	hypothetical protein
495	 74.58	+1	551829..552965	-	378	163849952	-	Mext_0508	-	glycosyl transferase group 1
496	 69.99	0	552956..554248	-	430	163849953	-	Mext_0509	-	radical SAM domain-containing protein
497	 72.83	+1	554245..555348	-	367	163849954	-	Mext_0510	-	NAD-dependent epimerase/dehydratase
498	 69.41	0	555345..556511	-	388	163849955	-	Mext_0511	-	NAD-dependent epimerase/dehydratase
499	 66.27	0	556903..557151	-	82	163849956	-	Mext_0512	-	short chain oxidoreductase
500	 63.11	-1	558034..558399	-	121	163849957	-	Mext_0514	-	hypothetical protein
501	 67.30	0	558559..560289	-	576	163849958	-	Mext_0515	-	cytochrome c biogenesis protein transmembrane region
502	 65.32	0	560545..561288	+	247	163849959	-	Mext_0516	-	response regulator receiver
503	 69.36	0	561288..562586	+	432	163849960	-	Mext_0517	-	ATPase domain-containing protein
504	 66.67	0	562616..564217	-	533	163849961	-	Mext_0518	-	ABC transporter related
505	 66.86	0	564594..565619	+	341	163849962	-	Mext_0519	-	alpha/beta hydrolase fold
506	 67.62	0	565603..566124	+	173	163849963	-	Mext_0520	-	putative cytochrome P460
507	 64.27	-1	566114..567241	+	375	163849964	-	Mext_0521	-	adenylyl cyclase class-3/4/guanylyl cyclase
508	 63.83	-1	567786..568067	-	93	163849965	-	Mext_0522	-	hypothetical protein
509	 68.37	0	568212..569384	-	390	163849966	-	Mext_0523	-	helix-turn-helix domain-containing protein
510	 67.01	0	569640..570524	-	294	163849967	-	Mext_0524	-	hypothetical protein
511	 65.41	0	570601..571077	-	158	163849968	-	Mext_0525	-	hypothetical protein
512	 63.95	-1	571349..573043	-	564	163849969	-	Mext_0526	-	sulfatase
513	 65.24	0	573046..574023	-	325	163849970	-	Mext_0527	-	hypothetical protein
514	 68.73	0	574468..576837	-	789	163849971	-	Mext_0528	-	RND superfamily transporter
515	 70.86	0	576874..577446	-	190	163849972	-	Mext_0529	-	hypothetical protein
516	 67.51	0	578813..579877	+	354	163849973	-	Mext_0530	-	helix-turn-helix domain-containing protein
517	 64.84	0	580688..581725	+	345	163849974	-	Mext_0531	-	hypothetical protein
518	 62.54	-1	581806..582096	-	96	163849975	-	Mext_0532	-	hypothetical protein
519	 62.27	-1	582224..582496	-	90	163849976	-	Mext_0533	-	Na+/H+ antiporter
520	 63.85	-1	582663..583124	-	153	163849977	-	Mext_0534	-	hypothetical protein
521	 63.75	-1	583860..584168	-	102	163849978	-	Mext_0535	-	hypothetical protein
522	 62.25	-1	584530..584778	-	82	163849979	-	Mext_0536	-	hypothetical protein
523	 61.34	-1	585179..586042	-	287	163849980	-	Mext_0537	-	peptidase M23B
524	 60.36	-1	586445..586777	+	110	163849981	-	Mext_0538	-	hypothetical protein
525	 70.48	0	586872..587291	+	139	163849982	-	Mext_0539	-	hypothetical protein
526	 69.70	0	587437..587733	+	98	163849983	-	Mext_0540	-	hypothetical protein
527	 66.67	0	588418..589326	+	302	163849984	-	Mext_0541	-	hypothetical protein
528	 71.10	0	589405..592041	+	878	163849985	-	Mext_0542	-	aminopeptidase N
529	 69.25	0	592227..594587	+	786	163849986	-	Mext_0543	-	PAS sensor protein
530	 70.66	0	594996..595922	+	308	163849987	-	Mext_0544	-	arginase
531	 67.79	0	595986..597593	-	535	163849988	-	Mext_0545	-	glucose-6-phosphate 1-dehydrogenase
532	 63.26	-1	597734..598291	-	185	163849989	-	Mext_0546	-	hypothetical protein
533	 67.28	0	598561..598722	+	53	163849990	-	Mext_0547	-	hypothetical protein
534	 68.52	0	598802..599125	-	107	163849991	-	Mext_0548	-	CutA1 divalent ion tolerance protein
535	 68.22	0	599230..600000	+	256	163849992	-	Mext_0549	-	NAD(+) kinase
536	 71.93	0	600069..600296	-	75	163849993	-	Mext_0550	-	hypothetical protein
537	 73.71	+1	600473..601750	+	425	163849994	-	Mext_0551	-	Fmu (Sun) domain-containing protein
538	 69.09	0	601810..601974	-	54	163849995	-	Mext_0552	-	hypothetical protein
539	 66.47	0	602321..603355	+	344	163849996	-	Mext_0553	-	hypothetical protein
540	 72.03	0	603725..604918	+	397	163849997	-	Mext_0554	-	aminotransferase class I and II
541	 68.18	0	604979..605308	-	109	163849998	-	Mext_0555	-	hypothetical protein
542	 71.92	0	605654..606586	+	310	163849999	-	Mext_0556	-	malonyl CoA-acyl carrier protein transacylase
543	 69.77	0	606696..607436	+	246	163850000	-	Mext_0557	-	3-oxoacyl-(acyl-carrier-protein) reductase
544	 60.76	-1	607700..607936	+	78	163850001	-	Mext_0558	-	acyl carrier protein
545	 68.17	0	608075..609337	+	420	163850002	-	Mext_0559	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
546	 69.87	0	609600..611003	+	467	163850003	-	Mext_0560	-	aminodeoxychorismate lyase
547	 72.16	0	611033..611779	-	248	163850004	-	Mext_0561	-	HAD family hydrolase
548	 65.58	0	611763..614150	-	795	163850005	-	Mext_0562	-	Kojibiose phosphorylase
549	 67.66	0	615009..616211	+	400	163850006	-	Mext_0563	-	acetate kinase
550	 68.99	0	616208..617239	+	343	163850007	-	Mext_0564	-	secretion protein HlyD family protein
551	 68.24	0	617247..619985	+	912	163850008	-	Mext_0565	-	ABC transporter related
552	 66.83	0	619987..621186	+	399	163850009	-	Mext_0566	-	ABC-2 type transporter
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.