IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4176	 70.73	0	4715068..4715535	-	155	163853633	-	Mext_4236	-	hypothetical protein
4177	 73.04	+1	4715532..4716692	-	386	163853634	-	Mext_4237	-	enoyl-CoA hydratase/isomerase
4178	 70.93	0	4717352..4718407	+	351	163853635	-	Mext_4238	-	delta-aminolevulinic acid dehydratase
4179	 76.12	+1	4718448..4718849	+	133	163853636	-	Mext_4239	-	hypothetical protein
4180	 67.07	0	4718963..4719457	+	164	163853637	-	Mext_4240	-	RDD domain-containing protein
4181	 67.87	0	4719596..4720342	+	248	163853638	-	Mext_4241	-	arginyl-tRNA-protein transferase
4182	 63.91	-1	4720429..4720755	+	108	163853639	-	Mext_4242	-	addiction module killer protein
4183	 62.89	-1	4720755..4721072	+	105	163853640	-	Mext_4243	-	hypothetical protein
4184	 70.21	0	4721107..4721670	-	187	163853641	-	Mext_4244	-	hexapaptide repeat-containing transferase
4185	 67.66	0	4721697..4722602	-	301	163853642	-	Mext_4245	-	protein of unknown function zinc metallopeptidase putative
4186	 71.30	0	4722708..4723679	-	323	163853643	-	Mext_4246	-	phage SPO1 DNA polymerase-related protein
4187	 66.73	0	4723891..4725564	+	557	163853644	-	Mext_4247	-	electron-transferring-flavoprotein dehydrogenase
4188	 75.05	+1	4725657..4726646	-	329	163853645	-	Mext_4248	-	peptidase S58 DmpA
4189	 70.17	0	4726643..4727527	-	294	163853646	-	Mext_4249	-	transporter DMT superfamily protein
4190	 72.57	0	4727585..4727872	-	95	163853647	-	Mext_4250	-	hypothetical protein
4191	 67.27	0	4728015..4728179	+	54	163853648	-	Mext_4251	-	hypothetical protein
4192	 70.37	0	4728276..4729463	+	395	163853649	-	Mext_4252	-	cystathionine beta-lyase
4193	 66.30	0	4729702..4730790	+	362	163853650	-	Mext_4253	-	helix-turn-helix domain-containing protein
4194	 62.02	-1	4731457..4731714	+	85	163853651	-	Mext_4254	-	hypothetical protein
4195	 67.51	0	4732856..4733209	-	117	163853652	-	Mext_4255	-	hypothetical protein
4196	 62.26	-1	4733939..4734460	-	173	163853653	-	Mext_4256	-	GCN5-related N-acetyltransferase
4197	 63.22	-1	4734604..4735212	-	202	163853654	-	Mext_4257	-	hypothetical protein
4198	 74.37	+1	4735820..4736416	-	198	163853655	-	Mext_4258	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
4199	 70.16	0	4736842..4740102	+	1086	163853656	-	Mext_4259	-	PAS sensor protein
4200	 71.15	0	4740364..4742592	-	742	163853657	-	Mext_4260	-	glycosyl transferase family protein
4201	 68.99	0	4742708..4743094	-	128	163853658	-	Mext_4261	-	cupin 2 domain-containing protein
4202	 75.40	+1	4743296..4743982	+	228	163853659	-	Mext_4262	-	protein-L-isoaspartate O-methyltransferase
4203	 67.86	0	4744174..4744677	+	167	163853660	-	Mext_4263	-	heat shock protein Hsp20
4204	 76.07	+1	4744791..4745279	+	162	163853661	-	Mext_4264	-	hypothetical protein
4205	 74.66	+1	4745342..4747405	-	687	163853662	-	Mext_4265	-	DNA mismatch repair protein MutL
4206	 70.82	0	4747547..4748773	-	408	163853663	-	Mext_4266	-	acyl-CoA dehydrogenase domain-containing protein
4207	 70.42	0	4748913..4750778	+	621	163853664	-	Mext_4267	-	ABC transporter related
4208	 72.11	0	4751169..4752197	+	342	163853665	-	Mext_4268	-	putative alpha/beta hydrolase fold
4209	 68.76	0	4752283..4752999	-	238	163853666	-	Mext_4269	-	deaminase-reductase domain-containing protein
4210	 71.52	0	4753148..4753600	+	150	163853667	-	Mext_4270	-	OsmC family protein
4211	 73.42	+1	4753634..4754107	+	157	163853668	-	Mext_4271	-	hypothetical protein
4212	 70.04	0	4754476..4756074	+	532	163853669	-	Mext_4272	-	extracellular solute-binding protein
4213	 71.43	0	4756071..4756994	+	307	163853670	-	Mext_4273	-	binding-protein-dependent transport systems inner membrane component
4214	 71.89	0	4756991..4758082	+	363	163853671	-	Mext_4274	-	binding-protein-dependent transport systems inner membrane component
4215	 72.51	0	4758090..4758380	-	96	163853672	-	Mext_4275	-	hypothetical protein
4216	 69.44	0	4758512..4759990	+	492	163853673	-	Mext_4276	-	major facilitator transporter
4217	 70.56	0	4760256..4760846	-	196	163853674	-	Mext_4277	-	hypothetical protein
4218	 67.67	0	4760986..4761684	-	232	163853675	-	Mext_4278	-	hypothetical protein
4219	 73.53	+1	4761916..4762920	-	334	163853676	-	Mext_4279	-	LysR substrate-binding
4220	 68.67	0	4763055..4763654	+	199	163853677	-	Mext_4280	-	flavoprotein WrbA
4221	 74.07	+1	4763717..4765795	-	692	163853678	-	Mext_4281	-	thiol:disulfide interchange protein, putative
4222	 71.72	0	4766069..4768819	-	916	163853679	-	Mext_4282	-	DNA mismatch repair protein MutS
4223	 74.21	+1	4769007..4769324	-	105	163853680	-	Mext_4283	-	hypothetical protein
4224	 75.32	+1	4769444..4772008	+	854	163853681	-	Mext_4284	-	ATP-dependent helicase HrpB
4225	 68.08	0	4771965..4772741	-	258	163853682	-	Mext_4285	-	hypothetical protein
4226	 73.92	+1	4772892..4773263	+	123	163853683	-	Mext_4286	-	hypothetical protein
4227	 66.67	0	4773276..4773671	-	131	163853684	-	Mext_4287	-	glyoxalase/bleomycin resistance protein/dioxygenase
4228	 74.32	+1	4773794..4774891	+	365	163853685	-	Mext_4288	-	tyrosine recombinase XerC
4229	 75.00	+1	4775207..4775830	-	207	163853686	-	Mext_4289	-	phosphoglycerate mutase
4230	 68.00	0	4775937..4776983	+	348	163853687	-	Mext_4290	-	hypothetical protein
4231	 73.16	+1	4777124..4777831	+	235	163853688	-	Mext_4291	-	MOSC domain-containing protein
4232	 66.30	0	4777835..4778662	-	275	163853689	-	Mext_4292	-	enoyl-acyl carrier protein reductase
4233	 71.71	0	4778910..4779860	-	316	163853690	-	Mext_4293	-	heat shock protein DnaJ domain-containing protein
4234	 71.74	0	4780006..4780596	-	196	163853691	-	Mext_4294	-	hypothetical protein
4235	 70.70	0	4780635..4781279	+	214	163853692	-	Mext_4295	-	pyridoxamine 5'-phosphate oxidase
4236	 67.82	0	4781314..4781661	-	115	163853693	-	Mext_4296	-	response regulator receiver
4237	 69.72	0	4781981..4782733	+	250	163853694	-	Mext_4297	-	short-chain dehydrogenase/reductase SDR
4238	 77.52	+2	4782726..4783877	+	383	163853695	-	Mext_4298	-	hypothetical protein
4239	 71.89	0	4783874..4784371	+	165	163853696	-	Mext_4299	-	NUDIX hydrolase
4240	 71.71	0	4784368..4784823	+	151	163853697	-	Mext_4300	-	hypothetical protein
4241	 68.00	0	4785117..4785416	+	99	163853698	-	Mext_4301	-	hypothetical protein
4242	 64.95	0	4785615..4787246	-	543	163853699	-	Mext_4302	-	hypothetical protein
4243	 69.96	0	4787481..4788818	-	445	163853700	-	Mext_4303	-	dihydroorotase
4244	 73.22	+1	4788920..4789774	+	284	163853701	-	Mext_4304	-	folate-binding protein YgfZ
4245	 68.57	0	4789771..4790400	+	209	163853702	-	Mext_4305	-	DNA-3-methyladenine glycosylase I
4246	 73.68	+1	4790397..4791023	+	208	163853703	-	Mext_4306	-	metal-dependent phosphohydrolase
4247	 72.12	0	4791038..4791550	+	170	163853704	-	Mext_4307	-	hypothetical protein
4248	 68.91	0	4791650..4791916	+	88	163853705	-	Mext_4308	-	exodeoxyribonuclease VII, small subunit
4249	 69.85	0	4792006..4793982	+	658	163853706	-	Mext_4309	-	1-deoxy-D-xylulose-5-phosphate synthase
4250	 68.98	0	4794028..4794633	-	201	163853707	-	Mext_4310	-	superoxide dismutase copper/zinc binding
4251	 73.57	+1	4794993..4795745	+	250	163853708	-	Mext_4311	-	hemolysin A
4252	 75.23	+1	4795745..4797040	+	431	163853709	-	Mext_4312	-	(Uracil-5)-methyltransferase
4253	 71.65	0	4797115..4798359	-	414	163853710	-	Mext_4313	-	capsular polysaccharide biosynthesis protein-like protein
4254	 68.96	0	4798675..4799676	+	333	163853711	-	Mext_4314	-	hypothetical protein
4255	 71.74	0	4799689..4800456	-	255	163853712	-	Mext_4315	-	hypothetical protein
4256	 69.53	0	4800589..4801809	+	406	163853713	-	Mext_4316	-	hypothetical protein
4257	 69.60	0	4801806..4802963	+	385	163853714	-	Mext_4317	-	amidohydrolase
4258	 74.10	+1	4803157..4804299	+	380	163853715	-	Mext_4318	-	methylated-DNA--protein-cysteine methyltransferase
4259	 68.43	0	4804304..4805326	-	340	163853716	-	Mext_4319	-	cation diffusion facilitator family transporter
4260	 69.00	0	4805448..4805876	+	142	163853717	-	Mext_4320	-	histidine triad (HIT) protein
4261	 66.67	0	4805932..4806378	-	148	163853718	-	Mext_4321	-	type IV pilus assembly PilZ
4262	 71.08	0	4806460..4806708	-	82	163853719	-	Mext_4322	-	hypothetical protein
4263	 70.06	0	4806994..4808877	-	627	163853720	-	Mext_4323	-	glycoside hydrolase 15-related
4264	 74.55	+1	4808969..4809247	-	92	163853721	-	Mext_4324	-	hypothetical protein
4265	 73.61	+1	4809310..4810476	-	388	163853722	-	Mext_4325	-	N-acetylglucosamine-6-phosphate deacetylase
4266	 74.28	+1	4810574..4811584	-	336	163853723	-	Mext_4326	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
4267	 74.44	+1	4811581..4812468	-	295	163853724	-	Mext_4327	-	N-acetylmuramic acid-6-phosphate etherase
4268	 72.54	0	4812563..4813549	+	328	163853725	-	Mext_4328	-	endonuclease/exonuclease/phosphatase
4269	 70.60	0	4813628..4814695	+	355	163853726	-	Mext_4329	-	asparaginase
4270	 71.90	0	4814812..4816359	-	515	163853727	-	Mext_4330	-	phospholipase D/transphosphatidylase
4271	 70.53	0	4816418..4817116	-	232	163853728	-	Mext_4331	-	SNARE associated Golgi protein
4272	 72.51	0	4817264..4817674	-	136	163853729	-	Mext_4332	-	hypothetical protein
4273	 71.97	0	4817856..4818590	-	244	163853730	-	Mext_4333	-	Surfeit locus 1 family protein
4274	 62.20	-1	4818676..4819056	-	126	163853731	-	Mext_4334	-	cytochrome o ubiquinol oxidase subunit IV
4275	 64.66	0	4819053..4819700	-	215	163853732	-	Mext_4335	-	cytochrome o ubiquinol oxidase, subunit III
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.