IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3768	 66.81	0	4246143..4246850	+	235	163853225	-	Mext_3824	-	hypothetical protein
3769	 59.09	-2	4247270..4248100	+	276	163853226	-	Mext_3825	-	GAF domain-containing protein
3770	 64.43	-1	4248231..4249928	+	565	163853227	-	Mext_3826	-	PAS sensor protein
3771	 69.75	0	4250263..4251753	+	496	163853228	-	Mext_3827	-	protease Do
3772	 57.22	-2	4252417..4252776	+	119	163853229	-	Mext_3828	-	acid-resistance protein
3773	 68.86	0	4253366..4254733	-	455	163853230	-	Mext_3829	-	chloride channel core
3774	 68.60	0	4254862..4256466	-	534	163853231	-	Mext_3830	-	AcrB/AcrD/AcrF family protein
3775	 68.09	0	4258111..4259448	-	445	163853232	-	Mext_3832	-	RND family efflux transporter MFP subunit
3776	 67.56	0	4260261..4261271	-	336	163853233	-	Mext_3833	-	cytochrome d ubiquinol oxidase, subunit II
3777	 67.58	0	4261286..4262710	-	474	163853234	-	Mext_3834	-	cytochrome bd ubiquinol oxidase subunit I
3778	 70.63	0	4262955..4263737	-	260	163853235	-	Mext_3835	-	hypothetical protein
3779	 69.46	0	4263734..4264162	-	142	163853236	-	Mext_3836	-	regulatory protein ArsR
3780	 69.57	0	4264159..4265052	-	297	163853237	-	Mext_3837	-	beta-lactamase domain-containing protein
3781	 69.82	0	4265055..4265720	-	221	163853238	-	Mext_3838	-	peroxiredoxin
3782	 69.66	0	4265817..4267520	+	567	163853239	-	Mext_3839	-	hypothetical protein
3783	 73.68	+1	4267769..4268908	+	379	163853240	-	Mext_3840	-	tetratricopeptide TPR_4
3784	 71.97	0	4268984..4269850	-	288	163853241	-	Mext_3841	-	alpha/beta hydrolase fold
3785	 75.14	+1	4270017..4271066	+	349	163853242	-	Mext_3842	-	periplasmic binding protein
3786	 74.29	+1	4271063..4272112	+	349	163853243	-	Mext_3843	-	transport system permease protein
3787	 72.22	0	4272109..4272882	+	257	163853244	-	Mext_3844	-	ABC transporter related
3788	 70.30	0	4273034..4273777	-	247	163853245	-	Mext_3845	-	oxidoreductase molybdopterin binding
3789	 69.41	0	4273774..4274502	-	242	163853246	-	Mext_3846	-	hypothetical protein
3790	 71.69	0	4274516..4275112	-	198	163853247	-	Mext_3847	-	methyltransferase type 12
3791	 74.57	+1	4275109..4276284	-	391	163853248	-	Mext_3848	-	acyl-CoA dehydrogenase type 2
3792	 72.90	+1	4276398..4276814	+	138	163853249	-	Mext_3849	-	hypothetical protein
3793	 71.14	0	4276820..4277065	+	81	163853250	-	Mext_3850	-	hypothetical protein
3794	 71.69	0	4277068..4277286	+	72	163853251	-	Mext_3851	-	hypothetical protein
3795	 67.86	0	4277374..4278543	-	389	163853252	-	Mext_3852	-	aldo/keto reductase
3796	 72.37	0	4278724..4278951	+	75	163853253	-	Mext_3853	-	hypothetical protein
3797	 72.17	0	4278957..4279556	-	199	163853254	-	Mext_3854	-	isochorismatase hydrolase
3798	 71.37	0	4279811..4281127	-	438	163853255	-	Mext_3855	-	RND family efflux transporter MFP subunit
3799	 67.32	0	4281120..4284350	-	1076	163853256	-	Mext_3856	-	acriflavin resistance protein
3800	 70.52	0	4284663..4286039	-	458	163853257	-	Mext_3857	-	hypothetical protein
3801	 67.34	0	4286036..4286773	-	245	163853258	-	Mext_3858	-	NADP oxidoreductase coenzyme F420-dependent
3802	 70.97	0	4286763..4287692	-	309	163853259	-	Mext_3859	-	aldo/keto reductase
3803	 74.95	+1	4287765..4288319	-	184	163853260	-	Mext_3860	-	methyltransferase
3804	 76.52	+1	4288332..4290341	-	669	163853261	-	Mext_3861	-	RNA-binding S4 domain-containing protein
3805	 65.54	0	4290432..4290608	-	58	163853262	-	Mext_3862	-	hypothetical protein
3806	 68.75	0	4290776..4291543	-	255	163853263	-	Mext_3863	-	arsenical resistance protein ArsH
3807	 71.67	0	4291594..4291953	+	119	163853264	-	Mext_3864	-	regulatory protein ArsR
3808	 71.23	0	4291946..4292383	+	145	163853265	-	Mext_3865	-	arsenate reductase
3809	 68.25	0	4292393..4293469	+	358	163853266	-	Mext_3866	-	arsenical-resistance protein
3810	 70.23	0	4293668..4295770	-	700	163853267	-	Mext_3867	-	diguanylate cyclase
3811	 73.53	+1	4296085..4297002	+	305	163853268	-	Mext_3868	-	alpha/beta hydrolase fold
3812	 71.79	0	4297007..4297708	-	233	163853269	-	Mext_3869	-	short-chain dehydrogenase/reductase SDR
3813	 73.65	+1	4297800..4298243	-	147	163853270	-	Mext_3870	-	CMP/dCMP deaminase zinc-binding
3814	 72.32	0	4298257..4299564	-	435	163853271	-	Mext_3871	-	phosphoribosylamine--glycine ligase
3815	 73.17	+1	4299648..4300385	+	245	163853272	-	Mext_3872	-	hypothetical protein
3816	 74.31	+1	4300905..4302473	+	522	163853273	-	Mext_3873	-	exodeoxyribonuclease VII, large subunit
3817	 65.35	0	4302619..4302846	+	75	163853274	-	Mext_3874	-	hypothetical protein
3818	 67.24	0	4302918..4303958	+	346	163853275	-	Mext_3875	-	ribose-phosphate pyrophosphokinase
3819	 66.45	0	4304083..4304547	-	154	163853276	-	Mext_3876	-	transcription elongation factor GreA/GreB domain-containing protein
3820	 72.77	0	4304568..4305566	-	332	163853277	-	Mext_3877	-	quinone oxidoreductase
3821	 74.83	+1	4305672..4306271	-	199	163853278	-	Mext_3878	-	hypothetical protein
3822	 61.36	-1	4306750..4307088	+	112	163853279	-	Mext_3879	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3823	 65.65	0	4307608..4308198	+	196	163853280	-	Mext_3880	-	transcription factor CarD
3824	 67.47	0	4308481..4309353	+	290	163853281	-	Mext_3881	-	RNA polymerase factor sigma-32
3825	 67.16	0	4310740..4310940	-	66	163853282	-	Mext_3883	-	putative site-specific integrase/recombinase
3826	 68.63	0	4311429..4311683	+	84	163853283	-	Mext_3884	-	UDP-N-acetylglucosamine 2-epimerase
3827	 71.33	0	4311761..4313305	-	514	163853284	-	Mext_3885	-	gid protein
3828	 68.33	0	4313479..4315101	+	540	163853285	-	Mext_3886	-	hemolysin-type calcium-binding region
3829	 73.85	+1	4315140..4316114	-	324	163853286	-	Mext_3887	-	PDZ/DHR/GLGF domain-containing protein
3830	 70.09	0	4316555..4317109	+	184	163853287	-	Mext_3888	-	sigma-70 family RNA polymerase sigma factor
3831	 77.18	+2	4317106..4317885	+	259	163853288	-	Mext_3889	-	uncharacterized protein-like protein
3832	 67.88	0	4318052..4319044	-	330	163853289	-	Mext_3890	-	hypothetical protein
3833	 67.85	0	4319528..4322809	-	1093	163853290	-	Mext_3891	-	excinuclease ABC, A subunit
3834	 70.16	0	4323038..4324096	+	352	163853291	-	Mext_3892	-	putative methyl-accepting chemotaxis protein
3835	 75.34	+1	4324259..4326298	+	679	163853292	-	Mext_3893	-	nitrate and nitrite sensing domain-containing protein
3836	 69.80	0	4326418..4327695	-	425	163853293	-	Mext_3894	-	RND family efflux transporter MFP subunit
3837	 68.47	0	4327778..4330942	+	1054	163853294	-	Mext_3895	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
3838	 71.43	0	4330953..4331393	-	146	163853295	-	Mext_3896	-	hypothetical protein
3839	 73.11	+1	4331459..4334251	-	930	163853296	-	Mext_3897	-	PAS sensor protein
3840	 67.32	0	4334477..4335238	-	253	163853297	-	Mext_3898	-	regulatory protein Crp
3841	 68.19	0	4335493..4336344	-	283	163853298	-	Mext_3899	-	glycoside hydrolase family protein
3842	 69.09	0	4336542..4336994	+	150	163853299	-	Mext_3900	-	hypothetical protein
3843	 75.16	+1	4337049..4338284	-	411	163853300	-	Mext_3901	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
3844	 67.98	0	4338896..4339123	+	75	163853301	-	Mext_3902	-	hypothetical protein
3845	 69.14	0	4339297..4340268	+	323	163853302	-	Mext_3903	-	alcohol dehydrogenase
3846	 69.47	0	4340402..4341079	+	225	163853303	-	Mext_3904	-	nicotinamidase
3847	 72.49	0	4341250..4342107	-	285	163853304	-	Mext_3905	-	aminotransferase class IV
3848	 70.95	0	4342094..4342723	-	209	163853305	-	Mext_3906	-	glutamine amidotransferase of anthranilate synthase
3849	 69.91	0	4342720..4344138	-	472	163853306	-	Mext_3907	-	para-aminobenzoate synthase, subunit I
3850	 64.02	-1	4344413..4344676	+	87	163853307	-	Mext_3908	-	addiction module antitoxin
3851	 65.60	0	4344663..4344944	+	93	163853308	-	Mext_3909	-	addiction module antitoxin
3852	 68.97	0	4345061..4346407	+	448	163853309	-	Mext_3910	-	MiaB-like tRNA modifying enzyme YliG
3853	 72.58	0	4346504..4346689	+	61	163853310	-	Mext_3911	-	hypothetical protein
3854	 69.98	0	4346696..4347118	+	140	163853311	-	Mext_3912	-	membrane protein-like protein
3855	 71.84	0	4347484..4348314	-	276	163853312	-	Mext_3913	-	MazG family protein
3856	 72.68	0	4349068..4350165	+	365	163853313	-	Mext_3914	-	plasmid encoded RepA protein
3857	 73.98	+1	4350631..4351191	+	186	163853314	-	Mext_3915	-	hypothetical protein
3858	 72.69	0	4351324..4352619	-	431	163853315	-	Mext_3916	-	patatin
3859	 68.29	0	4353138..4354187	+	349	163853316	-	Mext_3917	-	HpcH/HpaI aldolase
3860	 66.13	0	4354211..4354585	+	124	163853317	-	Mext_3918	-	hemimethylated DNA binding protein
3861	 74.28	+1	4354766..4355986	+	406	163853318	-	Mext_3919	-	diguanylate cyclase
3862	 68.25	0	4356081..4356332	-	83	163853319	-	Mext_3920	-	hypothetical protein
3863	 78.41	+2	4356546..4357754	+	402	163853320	-	Mext_3921	-	RND family efflux transporter MFP subunit
3864	 69.47	0	4357765..4360905	+	1046	163853321	-	Mext_3922	-	acriflavin resistance protein
3865	 72.19	0	4361319..4362476	+	385	163853322	-	Mext_3923	-	metal dependent phophohydrolase
3866	 73.42	+1	4362546..4363655	-	369	163853323	-	Mext_3924	-	agmatinase
3867	 70.25	0	4363937..4364941	+	334	163853324	-	Mext_3925	-	hypothetical protein
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.