IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3694	 72.00	0	4155476..4156282	-	268	163853151	-	Mext_3749	-	histidinol-phosphate phosphatase
3695	 68.16	0	4156286..4157221	-	311	163853152	-	Mext_3750	-	choline/ethanolamine kinase
3696	 72.07	0	4157444..4158424	-	326	163853153	-	Mext_3751	-	aminoglycoside phosphotransferase
3697	 72.10	0	4158421..4159746	-	441	163853154	-	Mext_3752	-	allantoate amidohydrolase
3698	 71.34	0	4159746..4161584	-	612	163853155	-	Mext_3753	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
3699	 70.35	0	4161584..4162507	-	307	163853156	-	Mext_3754	-	binding-protein-dependent transport systems inner membrane component
3700	 67.48	0	4162507..4163487	-	326	163853157	-	Mext_3755	-	binding-protein-dependent transport systems inner membrane component
3701	 65.43	0	4163581..4165203	-	540	163853158	-	Mext_3756	-	extracellular solute-binding protein
3702	 68.43	0	4165486..4168041	-	851	163853159	-	Mext_3757	-	TonB-dependent siderophore receptor
3703	 73.33	+1	4168175..4169149	-	324	163853160	-	Mext_3758	-	FecR protein
3704	 69.24	0	4169246..4169788	-	180	163853161	-	Mext_3759	-	sigma-70 family RNA polymerase sigma factor
3705	 72.77	0	4170645..4172429	+	594	163853162	-	Mext_3760	-	IucA/IucC family protein
3706	 72.91	+1	4172413..4175409	+	998	163853163	-	Mext_3761	-	IucA/IucC family protein
3707	 67.51	0	4175406..4176707	+	433	163853164	-	Mext_3762	-	hypothetical protein
3708	 71.92	0	4176704..4177540	+	278	163853165	-	Mext_3763	-	xylose isomerase domain-containing protein
3709	 69.18	0	4177569..4177847	+	92	163853166	-	Mext_3764	-	hypothetical protein
3710	 64.67	0	4178137..4178637	+	166	163853167	-	Mext_3765	-	GCN5-related N-acetyltransferase
3711	 71.24	0	4178805..4179482	+	225	163853168	-	Mext_3766	-	hypothetical protein
3712	 53.81	-2	4179706..4179915	+	69	163853169	-	Mext_3767	-	hypothetical protein
3713	 72.61	0	4180288..4181061	-	257	163853170	-	Mext_3768	-	TetR family transcriptional regulator
3714	 75.54	+1	4181132..4181965	-	277	163853171	-	Mext_3769	-	pyrroline-5-carboxylate reductase
3715	 66.07	0	4182047..4182553	-	168	163853172	-	Mext_3770	-	hypothetical protein
3716	 69.15	0	4183012..4183293	-	93	163853173	-	Mext_3771	-	hypothetical protein
3717	 70.25	0	4183536..4184261	+	241	163853174	-	Mext_3772	-	response regulator receiver
3718	 74.47	+1	4184258..4185718	+	486	163853175	-	Mext_3773	-	ATPase domain-containing protein
3719	 66.25	0	4185904..4187091	+	395	163853176	-	Mext_3774	-	diguanylate cyclase
3720	 68.65	0	4187220..4187876	-	218	163853177	-	Mext_3775	-	putative glutathione-S-transferase protein
3721	 68.23	0	4188227..4189441	+	404	163853178	-	Mext_3776	-	polyhydroxyalkanoate depolymerase, intracellular
3722	 70.75	0	4189876..4190193	+	105	163853179	-	Mext_3777	-	ribosomal protein S21
3723	 71.28	0	4190294..4190683	-	129	163853180	-	Mext_3778	-	response regulator receiver
3724	 70.10	0	4190963..4191748	+	261	163853181	-	Mext_3779	-	glutamine amidotransferase class-II
3725	 72.98	+1	4191900..4192691	+	263	163853182	-	Mext_3780	-	hypothetical protein
3726	 67.43	0	4192720..4193766	-	348	163853183	-	Mext_3781	-	dehydratase
3727	 61.86	-1	4193961..4194272	-	103	163853184	-	Mext_3782	-	protein of unknown function YGGT
3728	 60.90	-1	4194558..4195562	+	334	163853185	-	Mext_3783	-	integrase family protein
3729	 47.34	-2	4196319..4197446	-	375	163853186	-	Mext_3784	-	hypothetical protein
3730	 56.32	-2	4198641..4199945	+	434	163853187	-	Mext_3785	-	chromosome segregation ATPase-like protein
3731	 55.94	-2	4200118..4200378	+	86	163853188	-	Mext_3786	-	hypothetical protein
3732	 60.52	-1	4201211..4201633	+	140	163853189	-	Mext_3787	-	ROSMUCR transcriptional regulator
3733	 62.47	-1	4202168..4202977	+	269	163853190	-	Mext_3788	-	resolvase domain-containing protein
3734	 45.14	-2	4204081..4205334	+	417	163853191	-	Mext_3789	-	hypothetical protein
3735	 68.51	0	4205749..4206561	-	270	163853192	-	Mext_3790	-	transposase IS4 family protein
3736	 65.94	0	4209397..4210218	-	273	163853193	-	Mext_3791	-	short-chain dehydrogenase/reductase SDR
3737	 69.33	0	4210411..4210710	-	99	163853194	-	Mext_3792	-	hypothetical protein
3738	 67.56	0	4210938..4211387	+	149	163853195	-	Mext_3793	-	regulatory protein MarR
3739	 67.22	0	4211450..4211812	-	120	163853196	-	Mext_3794	-	DoxX family protein
3740	 69.65	0	4211848..4213254	-	468	163853197	-	Mext_3795	-	MATE efflux family protein
3741	 67.79	0	4213289..4213645	-	118	163853198	-	Mext_3796	-	hypothetical protein
3742	 67.96	0	4213821..4214363	-	180	163853199	-	Mext_3797	-	regulatory protein TetR
3743	 66.96	0	4214603..4217710	-	1035	163853200	-	Mext_3798	-	acriflavin resistance protein
3744	 67.96	0	4217707..4218792	-	361	163853201	-	Mext_3799	-	RND family efflux transporter MFP subunit
3745	 62.67	-1	4218866..4219165	+	99	163853202	-	Mext_3800	-	hypothetical protein
3746	 69.53	0	4219842..4220750	-	302	163853203	-	Mext_3801	-	carbonate dehydratase
3747	 64.97	0	4220845..4221726	+	293	163853204	-	Mext_3802	-	aldo/keto reductase
3748	 65.78	0	4222153..4223622	+	489	163853205	-	Mext_3803	-	diguanylate cyclase
3749	 65.89	0	4223977..4225773	-	598	163853206	-	Mext_3804	-	EAL domain-containing protein
3750	 62.14	-1	4226169..4226477	-	102	163853207	-	Mext_3805	-	hypothetical protein
3751	 65.80	0	4226688..4227731	+	347	163853208	-	Mext_3806	-	regulatory protein LysR
3752	 66.57	0	4228269..4229333	+	354	163853209	-	Mext_3807	-	hypothetical protein
3753	 63.41	-1	4229379..4230482	+	367	163853210	-	Mext_3808	-	hypothetical protein
3754	 61.20	-1	4231505..4231888	+	127	163853211	-	Mext_3809	-	hypothetical protein
3755	 60.54	-1	4231962..4232222	-	86	163853212	-	Mext_3810	-	hypothetical protein
3756	 61.81	-1	4232346..4232819	-	157	163853213	-	Mext_3811	-	hypothetical protein
3757	 66.56	0	4232899..4234854	-	651	163853214	-	Mext_3812	-	hypothetical protein
3758	 64.87	0	4235034..4236536	+	500	163853215	-	Mext_3813	-	PAS sensor protein
3759	 65.90	0	4236960..4237220	+	86	163853216	-	Mext_3814	-	transglycosylase-associated protein
3760	 70.05	0	4237269..4238243	+	324	163853217	-	Mext_3815	-	hypothetical protein
3761	 66.26	0	4238240..4238731	+	163	163853218	-	Mext_3816	-	hypothetical protein
3762	 69.15	0	4238728..4239612	+	294	163853219	-	Mext_3817	-	hypothetical protein
3763	 65.00	0	4240452..4240871	+	139	163853220	-	Mext_3818	-	hypothetical protein
3764	 65.95	0	4240946..4242205	+	419	163853221	-	Mext_3819	-	PHB depolymerase family esterase
3765	 58.12	-2	4242382..4243458	-	358	163853222	-	Mext_3821	-	choloylglycine hydrolase
3766	 65.70	0	4243905..4244831	+	308	163853223	-	Mext_3822	-	alpha/beta hydrolase fold
3767	 69.31	0	4244810..4245679	-	289	163853224	-	Mext_3823	-	LysR substrate-binding
3768	 66.81	0	4246143..4246850	+	235	163853225	-	Mext_3824	-	hypothetical protein
3769	 59.09	-2	4247270..4248100	+	276	163853226	-	Mext_3825	-	GAF domain-containing protein
3770	 64.43	-1	4248231..4249928	+	565	163853227	-	Mext_3826	-	PAS sensor protein
3771	 69.75	0	4250263..4251753	+	496	163853228	-	Mext_3827	-	protease Do
3772	 57.22	-2	4252417..4252776	+	119	163853229	-	Mext_3828	-	acid-resistance protein
3773	 68.86	0	4253366..4254733	-	455	163853230	-	Mext_3829	-	chloride channel core
3774	 68.60	0	4254862..4256466	-	534	163853231	-	Mext_3830	-	AcrB/AcrD/AcrF family protein
3775	 68.09	0	4258111..4259448	-	445	163853232	-	Mext_3832	-	RND family efflux transporter MFP subunit
3776	 67.56	0	4260261..4261271	-	336	163853233	-	Mext_3833	-	cytochrome d ubiquinol oxidase, subunit II
3777	 67.58	0	4261286..4262710	-	474	163853234	-	Mext_3834	-	cytochrome bd ubiquinol oxidase subunit I
3778	 70.63	0	4262955..4263737	-	260	163853235	-	Mext_3835	-	hypothetical protein
3779	 69.46	0	4263734..4264162	-	142	163853236	-	Mext_3836	-	regulatory protein ArsR
3780	 69.57	0	4264159..4265052	-	297	163853237	-	Mext_3837	-	beta-lactamase domain-containing protein
3781	 69.82	0	4265055..4265720	-	221	163853238	-	Mext_3838	-	peroxiredoxin
3782	 69.66	0	4265817..4267520	+	567	163853239	-	Mext_3839	-	hypothetical protein
3783	 73.68	+1	4267769..4268908	+	379	163853240	-	Mext_3840	-	tetratricopeptide TPR_4
3784	 71.97	0	4268984..4269850	-	288	163853241	-	Mext_3841	-	alpha/beta hydrolase fold
3785	 75.14	+1	4270017..4271066	+	349	163853242	-	Mext_3842	-	periplasmic binding protein
3786	 74.29	+1	4271063..4272112	+	349	163853243	-	Mext_3843	-	transport system permease protein
3787	 72.22	0	4272109..4272882	+	257	163853244	-	Mext_3844	-	ABC transporter related
3788	 70.30	0	4273034..4273777	-	247	163853245	-	Mext_3845	-	oxidoreductase molybdopterin binding
3789	 69.41	0	4273774..4274502	-	242	163853246	-	Mext_3846	-	hypothetical protein
3790	 71.69	0	4274516..4275112	-	198	163853247	-	Mext_3847	-	methyltransferase type 12
3791	 74.57	+1	4275109..4276284	-	391	163853248	-	Mext_3848	-	acyl-CoA dehydrogenase type 2
3792	 72.90	+1	4276398..4276814	+	138	163853249	-	Mext_3849	-	hypothetical protein
3793	 71.14	0	4276820..4277065	+	81	163853250	-	Mext_3850	-	hypothetical protein
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.