IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3229	 74.62	+1	3631665..3633122	-	485	163852686	-	Mext_3271	-	hypothetical protein
3230	 72.93	+1	3633393..3634574	-	393	163852687	-	Mext_3272	-	lytic murein transglycosylase
3231	 68.48	0	3634571..3635563	-	330	163852688	-	Mext_3273	-	UDP-glucose 4-epimerase
3232	 65.74	0	3635736..3636602	+	288	163852689	-	Mext_3274	-	UTP-glucose-1-phosphate uridylyltransferase
3233	 68.23	0	3636844..3637740	-	298	163852690	-	Mext_3275	-	N-formylglutamate amidohydrolase
3234	 61.62	-1	3638047..3638403	+	118	163852691	-	Mext_3276	-	response regulator receiver
3235	 68.99	0	3638526..3638783	+	85	163852692	-	Mext_3277	-	glutaredoxin 3
3236	 70.21	0	3638780..3639625	+	281	163852693	-	Mext_3278	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3237	 72.54	0	3639746..3640222	+	158	163852694	-	Mext_3279	-	hypothetical protein
3238	 69.95	0	3640241..3641305	-	354	163852695	-	Mext_3280	-	PAS sensor protein
3239	 67.88	0	3641480..3642139	+	219	163852696	-	Mext_3281	-	peptide methionine sulfoxide reductase
3240	 62.10	-1	3642244..3642747	+	167	163852697	-	Mext_3282	-	hypothetical protein
3241	 62.75	-1	3642834..3643292	-	152	163852698	-	Mext_3283	-	hypothetical protein
3242	 73.55	+1	3643324..3644253	-	309	163852699	-	Mext_3284	-	penicillin-insensitive murein endopeptidase
3243	 69.95	0	3644380..3644775	+	131	163852700	-	Mext_3285	-	PRC-barrel domain-containing protein
3244	 70.11	0	3644806..3645153	-	115	163852701	-	Mext_3286	-	hypothetical protein
3245	 70.77	0	3645239..3646480	-	413	163852702	-	Mext_3287	-	Na+/H+ antiporter NhaA
3246	 71.50	0	3646552..3647193	-	213	163852703	-	Mext_3288	-	redoxin domain-containing protein
3247	 70.33	0	3647233..3648624	+	463	163852704	-	Mext_3289	-	argininosuccinate lyase
3248	 69.87	0	3648721..3649032	+	103	163852705	-	Mext_3290	-	hypothetical protein
3249	 71.05	0	3649188..3649871	+	227	163852706	-	Mext_3291	-	hypothetical protein
3250	 72.73	0	3650031..3650294	-	87	163852707	-	Mext_3292	-	hypothetical protein
3251	 71.95	0	3650736..3651473	-	245	163852708	-	Mext_3293	-	HAD family hydrolase
3252	 70.73	0	3651695..3653464	+	589	163852709	-	Mext_3294	-	carbamoyltransferase
3253	 73.91	+1	3653507..3653851	-	114	163852710	-	Mext_3295	-	hypothetical protein
3254	 65.63	0	3653948..3654622	-	224	163852711	-	Mext_3296	-	haloacid dehalogenase, type II
3255	 71.31	0	3654660..3656189	-	509	163852712	-	Mext_3297	-	integral membrane protein MviN
3256	 63.50	-1	3656424..3657023	-	199	163852713	-	Mext_3298	-	superoxide dismutase
3257	 73.72	+1	3657393..3658385	+	330	163852714	-	Mext_3299	-	hypothetical protein
3258	 71.29	0	3658455..3660206	-	583	163852715	-	Mext_3300	-	PAS sensor protein
3259	 71.88	0	3660314..3661273	-	319	163852716	-	Mext_3301	-	glycosyl transferase family protein
3260	 72.85	+1	3661270..3662175	-	301	163852717	-	Mext_3302	-	rhamnosyltransferase
3261	 73.22	+1	3662247..3663710	-	487	163852718	-	Mext_3303	-	peptidase M48 Ste24p
3262	 73.47	+1	3663756..3664607	-	283	163852719	-	Mext_3304	-	hypothetical protein
3263	 60.05	-2	3665341..3665748	+	135	163852720	-	Mext_3305	-	helix-turn-helix domain-containing protein
3264	 68.03	0	3665956..3667131	+	391	163852721	-	Mext_3306	-	methionine adenosyltransferase
3265	 71.27	0	3667141..3667878	+	245	163852722	-	Mext_3307	-	tRNA (guanine-N(7)-)-methyltransferase
3266	 69.05	0	3668132..3670864	-	910	163852723	-	Mext_3308	-	DNA topoisomerase I
3267	 68.46	0	3671013..3671960	-	315	163852724	-	Mext_3309	-	oxidoreductase molybdopterin binding
3268	 67.58	0	3671957..3672829	-	290	163852725	-	Mext_3310	-	putative transmembrane b-type cytochrome protein
3269	 65.71	0	3672994..3673305	-	103	163852726	-	Mext_3311	-	hypothetical protein
3270	 68.99	0	3673580..3674527	+	315	163852727	-	Mext_3312	-	aspartate carbamoyltransferase
3271	 71.26	0	3674533..3675837	+	434	163852728	-	Mext_3313	-	dihydroorotase, multifunctional complex type
3272	 71.10	0	3675834..3676442	+	202	163852729	-	Mext_3314	-	hypothetical protein
3273	 73.37	+1	3676474..3677667	+	397	163852730	-	Mext_3315	-	DNA protecting protein DprA
3274	 72.82	+1	3677958..3678818	+	286	163852731	-	Mext_3316	-	GDSL family lipase
3275	 71.35	0	3678815..3679966	+	383	163852732	-	Mext_3317	-	hypothetical protein
3276	 71.56	0	3680057..3680731	+	224	163852733	-	Mext_3318	-	ThiJ/PfpI domain-containing protein
3277	 69.98	0	3680728..3681210	-	160	163852734	-	Mext_3319	-	Holliday junction resolvase YqgF
3278	 68.74	0	3681222..3681800	-	192	163852735	-	Mext_3320	-	hypothetical protein
3279	 67.42	0	3682006..3682137	+	43	163852736	-	Mext_3321	-	hypothetical protein
3280	 66.67	0	3682296..3682583	+	95	163852737	-	Mext_3322	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
3281	 69.57	0	3682680..3684161	+	493	163852738	-	Mext_3323	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
3282	 68.59	0	3684152..3684463	+	103	163852739	-	Mext_3324	-	hypothetical protein
3283	 65.43	0	3684522..3684845	-	107	163852740	-	Mext_3325	-	excinuclease ABC subunit C
3284	 66.64	0	3684991..3688155	-	1054	163852741	-	Mext_3326	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
3285	 69.98	0	3688234..3689559	-	441	163852742	-	Mext_3327	-	RND family efflux transporter MFP subunit
3286	 69.46	0	3689940..3690368	-	142	163852743	-	Mext_3328	-	hypothetical protein
3287	 70.00	0	3690603..3691202	+	199	163852744	-	Mext_3329	-	ErfK/YbiS/YcfS/YnhG family protein
3288	 70.14	0	3691785..3693107	+	440	163852745	-	Mext_3330	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
3289	 70.77	0	3693109..3694131	+	340	163852746	-	Mext_3331	-	2OG-Fe(II) oxygenase
3290	 64.14	-1	3694545..3694781	+	78	163852747	-	Mext_3332	-	hypothetical protein
3291	 63.64	-1	3694873..3695268	-	131	163852748	-	Mext_3333	-	Usg family protein
3292	 66.85	0	3695529..3697151	-	540	163852749	-	Mext_3334	-	chaperonin GroEL
3293	 67.35	0	3697187..3697477	-	96	163852750	-	Mext_3335	-	chaperonin Cpn10
3294	 70.75	0	3697740..3698963	-	407	163852751	-	Mext_3336	-	acyl-CoA dehydrogenase type 2
3295	 71.44	0	3699253..3701661	-	802	163852752	-	Mext_3337	-	hypothetical protein
3296	 70.54	0	3701765..3702847	+	360	163852753	-	Mext_3338	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
3297	 73.05	+1	3702849..3704069	+	406	163852754	-	Mext_3339	-	oxidoreductase molybdopterin binding
3298	 76.07	+1	3704059..3704643	+	194	163852755	-	Mext_3340	-	cytochrome c, class I
3299	 71.41	0	3704640..3705608	+	322	163852756	-	Mext_3341	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
3300	 71.63	0	3705614..3706660	+	348	163852757	-	Mext_3342	-	alkanesulfonate monooxygenase
3301	 70.78	0	3706657..3708066	+	469	163852758	-	Mext_3343	-	xanthine permease
3302	 70.78	0	3707982..3708638	-	218	163852759	-	Mext_3344	-	DSBA oxidoreductase
3303	 69.61	0	3708635..3709516	-	293	163852760	-	Mext_3345	-	ABC transporter related
3304	 72.49	0	3709513..3710388	-	291	163852761	-	Mext_3346	-	binding-protein-dependent transport systems inner membrane component
3305	 70.20	0	3710385..3711827	-	480	163852762	-	Mext_3347	-	putative ABC transporter, substrate-binding protein
3306	 70.59	0	3712164..3712928	+	254	163852763	-	Mext_3348	-	cyclic nucleotide-binding
3307	 76.88	+1	3712966..3713925	-	319	163852764	-	Mext_3349	-	heat domain-containing protein
3308	 66.24	0	3713931..3714164	-	77	163852765	-	Mext_3350	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3309	 66.27	0	3714179..3715927	-	582	163852766	-	Mext_3351	-	putative oxidoreductase
3310	 73.46	+1	3715939..3716262	-	107	163852767	-	Mext_3352	-	hypothetical protein
3311	 59.20	-2	3716805..3716978	-	57	163852768	-	Mext_3353	-	hypothetical protein
3312	 58.58	-2	3717390..3719393	-	667	163852769	-	Mext_3354	-	diguanylate cyclase
3313	 63.58	-1	3719786..3720853	+	355	163852770	-	Mext_3355	-	hypothetical protein
3314	 64.52	0	3721492..3721863	-	123	163852771	-	Mext_3357	-	transcription elongation factor GreA/GreB domain-containing protein
3315	 62.14	-1	3722801..3723286	+	161	163852772	-	Mext_3358	-	hypothetical protein
3316	 62.86	-1	3723581..3724027	-	148	163852773	-	Mext_3359	-	hypothetical protein
3317	 62.60	-1	3724112..3724357	-	81	163852774	-	Mext_3360	-	hypothetical protein
3318	 64.06	-1	3724354..3724698	-	114	163852775	-	Mext_3361	-	hypothetical protein
3319	 63.38	-1	3725376..3727412	+	678	163852776	-	Mext_3362	-	PAS sensor protein
3320	 63.25	-1	3727493..3727873	-	126	163852777	-	Mext_3363	-	response regulator receiver
3321	 68.15	0	3727933..3728268	+	111	163852778	-	Mext_3364	-	signal transduction histidine kinase
3322	 64.80	0	3728490..3729452	-	320	163852779	-	Mext_3365	-	LysR substrate-binding
3323	 62.56	-1	3729755..3730948	+	397	163852780	-	Mext_3366	-	extracellular ligand-binding receptor
3324	 66.21	0	3731075..3731950	+	291	163852781	-	Mext_3367	-	inner-membrane translocator
3325	 67.56	0	3731947..3733728	+	593	163852782	-	Mext_3368	-	ABC transporter related
3326	 69.11	0	3733728..3734465	+	245	163852783	-	Mext_3369	-	ABC transporter related
3327	 64.39	-1	3734547..3735248	+	233	163852784	-	Mext_3370	-	cyclase family protein
3328	 70.35	0	3735303..3736712	+	469	163852785	-	Mext_3371	-	amidase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.