IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3152	 70.22	0	3546035..3546625	-	196	163852609	-	Mext_3194	-	orotate phosphoribosyltransferase
3153	 69.83	0	3546842..3547189	-	115	163852610	-	Mext_3195	-	hypothetical protein
3154	 68.50	0	3547304..3549535	-	743	163852611	-	Mext_3196	-	RelA/SpoT family protein
3155	 67.40	0	3549907..3550317	-	136	163852612	-	Mext_3197	-	DNA-directed RNA polymerase subunit omega
3156	 69.31	0	3550521..3551087	+	188	163852613	-	Mext_3198	-	scaffold protein Nfu/NifU
3157	 72.25	0	3551245..3551925	+	226	163852614	-	Mext_3199	-	peptidase M22 glycoprotease
3158	 70.42	0	3551991..3552443	+	150	163852615	-	Mext_3200	-	GCN5-related N-acetyltransferase
3159	 72.92	+1	3552469..3553347	+	292	163852616	-	Mext_3201	-	phospholipid/glycerol acyltransferase
3160	 70.50	0	3553352..3553795	-	147	163852617	-	Mext_3202	-	MEKHLA domain-containing protein
3161	 59.28	-2	3553894..3554340	+	148	163852618	-	Mext_3203	-	hypothetical protein
3162	 69.65	0	3554572..3555912	+	446	163852619	-	Mext_3204	-	RNA modification protein
3163	 69.74	0	3555949..3557055	+	368	163852620	-	Mext_3205	-	PhoH family protein
3164	 65.64	0	3557125..3557610	+	161	163852621	-	Mext_3206	-	hypothetical protein
3165	 72.06	0	3557647..3558795	+	382	163852622	-	Mext_3207	-	CBS domain-containing protein
3166	 72.36	0	3558824..3560527	+	567	163852623	-	Mext_3208	-	apolipoprotein N-acyltransferase
3167	 73.15	+1	3560710..3561480	+	256	163852624	-	Mext_3209	-	hypothetical protein
3168	 66.29	0	3561607..3563199	-	530	163852625	-	Mext_3210	-	catalase
3169	 71.30	0	3563347..3564318	+	323	163852626	-	Mext_3211	-	LysR substrate-binding
3170	 75.09	+1	3564472..3565527	+	351	163852627	-	Mext_3212	-	membrane protein AbrB duplication
3171	 69.28	0	3565524..3565868	+	114	163852628	-	Mext_3213	-	diacylglycerol kinase
3172	 65.15	0	3565891..3566088	-	65	163852629	-	Mext_3214	-	hypothetical protein
3173	 61.69	-1	3566085..3566285	-	66	163852630	-	Mext_3215	-	hypothetical protein
3174	 70.61	0	3566560..3567117	+	185	163852631	-	Mext_3216	-	metallophosphoesterase
3175	 72.26	0	3567127..3568002	-	291	163852632	-	Mext_3217	-	glutamate racemase
3176	 69.75	0	3568213..3569475	+	420	163852633	-	Mext_3218	-	hypothetical protein
3177	 70.76	0	3569533..3570510	+	325	163852634	-	Mext_3219	-	hypothetical protein
3178	 65.59	0	3570785..3572926	+	713	163852635	-	Mext_3220	-	hypothetical protein
3179	 69.16	0	3572976..3573416	-	146	163852636	-	Mext_3221	-	hypothetical protein
3180	 71.91	0	3573639..3576326	+	895	163852637	-	Mext_3222	-	nitrate reductase
3181	 73.94	+1	3576442..3577899	+	485	163852638	-	Mext_3223	-	uroporphyrin-III C-methyltransferase
3182	 68.72	0	3578107..3578787	+	226	163852639	-	Mext_3224	-	electron transport protein SCO1/SenC
3183	 71.58	0	3578738..3580528	-	596	163852640	-	Mext_3225	-	glycosyl transferase family protein
3184	 66.13	0	3580704..3581627	+	307	163852641	-	Mext_3226	-	extracellular solute-binding protein
3185	 62.80	-1	3581723..3581929	+	68	163852642	-	Mext_3227	-	hypothetical protein
3186	 66.91	0	3581953..3582363	-	136	163852643	-	Mext_3228	-	hypothetical protein
3187	 70.28	0	3582457..3584364	-	635	163852644	-	Mext_3229	-	cobalt chelatase, pCobT subunit
3188	 65.35	0	3584485..3585468	-	327	163852645	-	Mext_3230	-	cobalt chelatase, pCobS small subunit
3189	 70.62	0	3585808..3586515	-	235	163852646	-	Mext_3231	-	heat shock protein DnaJ domain-containing protein
3190	 69.72	0	3586602..3586961	+	119	163852647	-	Mext_3232	-	BolA family protein
3191	 73.76	+1	3586993..3587415	+	140	163852648	-	Mext_3233	-	class I peptide chain release factor
3192	 68.38	0	3587429..3588187	-	252	163852649	-	Mext_3234	-	hypothetical protein
3193	 71.49	0	3588223..3589218	-	331	163852650	-	Mext_3235	-	methyltransferase type 12
3194	 69.78	0	3589264..3590322	+	352	163852651	-	Mext_3236	-	putative mRNA 3-end processing factor
3195	 70.52	0	3590319..3592160	+	613	163852652	-	Mext_3237	-	ATP dependent DNA ligase
3196	 69.15	0	3592157..3592639	+	160	163852653	-	Mext_3238	-	hypothetical protein
3197	 71.59	0	3592648..3593094	-	148	163852654	-	Mext_3239	-	hypothetical protein
3198	 56.97	-2	3593217..3593381	-	54	163852655	-	Mext_3240	-	hypothetical protein
3199	 68.48	0	3593484..3595685	-	733	163852656	-	Mext_3241	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
3200	 69.25	0	3595753..3596604	+	283	163852657	-	Mext_3242	-	EAL domain-containing protein
3201	 65.86	0	3596680..3597177	-	165	163852658	-	Mext_3243	-	hypothetical protein
3202	 69.89	0	3597305..3598513	-	402	163852659	-	Mext_3244	-	acetyl-CoA acetyltransferase
3203	 68.45	0	3598700..3600490	-	596	163852660	-	Mext_3245	-	acyl-CoA dehydrogenase domain-containing protein
3204	 73.41	+1	3600696..3604133	+	1145	163852661	-	Mext_3246	-	Sel1 domain-containing protein
3205	 71.56	0	3604584..3604910	+	108	163852662	-	Mext_3247	-	hypothetical protein
3206	 69.84	0	3604968..3605912	-	314	163852663	-	Mext_3248	-	hypothetical protein
3207	 70.71	0	3606050..3606568	+	172	163852664	-	Mext_3249	-	hypothetical protein
3208	 70.90	0	3606565..3607368	+	267	163852665	-	Mext_3250	-	phosphoesterase PA-phosphatase related
3209	 70.49	0	3607424..3608731	+	435	163852666	-	Mext_3251	-	oxidoreductase domain-containing protein
3210	 68.71	0	3608843..3608989	-	48	163852667	-	Mext_3252	-	hypothetical protein
3211	 70.99	0	3609070..3610365	-	431	163852668	-	Mext_3253	-	processing peptidase
3212	 68.86	0	3610587..3611999	-	470	163852669	-	Mext_3254	-	threonine synthase
3213	 69.57	0	3612085..3612498	-	137	163852670	-	Mext_3255	-	hypothetical protein
3214	 70.95	0	3612595..3613365	-	256	163852671	-	Mext_3256	-	Surfeit locus 1 family protein
3215	 70.40	0	3613365..3613739	-	124	163852672	-	Mext_3257	-	hypothetical protein
3216	 66.43	0	3613866..3614723	-	285	163852673	-	Mext_3258	-	cytochrome c oxidase subunit III
3217	 67.16	0	3614870..3615478	-	202	163852674	-	Mext_3259	-	cytochrome c oxidase assembly protein CtaG/Cox11
3218	 67.27	0	3615491..3615655	-	54	163852675	-	Mext_3260	-	protein CoxF
3219	 69.50	0	3615664..3616617	-	317	163852676	-	Mext_3261	-	protoheme IX farnesyltransferase
3220	 64.70	0	3616783..3618411	-	542	163852677	-	Mext_3262	-	cytochrome c oxidase, subunit I
3221	 66.19	0	3618489..3619328	-	279	163852678	-	Mext_3263	-	cytochrome c oxidase, subunit II
3222	 70.78	0	3619584..3620459	+	291	163852679	-	Mext_3264	-	formate dehydrogenase family accessory protein FdhD
3223	 72.91	+1	3620486..3621526	-	346	163852680	-	Mext_3265	-	hypothetical protein
3224	 68.04	0	3622149..3626867	+	1572	163852681	-	Mext_3266	-	glutamate synthase (ferredoxin)
3225	 68.27	0	3626991..3628424	+	477	163852682	-	Mext_3267	-	glutamate synthase, NADH/NADPH, small subunit
3226	 72.73	0	3628503..3629459	-	318	163852683	-	Mext_3268	-	beta-lactamase domain-containing protein
3227	 75.32	+1	3629629..3630969	+	446	163852684	-	Mext_3269	-	ATPase domain-containing protein
3228	 71.49	0	3630975..3631637	+	220	163852685	-	Mext_3270	-	response regulator receiver
3229	 74.62	+1	3631665..3633122	-	485	163852686	-	Mext_3271	-	hypothetical protein
3230	 72.93	+1	3633393..3634574	-	393	163852687	-	Mext_3272	-	lytic murein transglycosylase
3231	 68.48	0	3634571..3635563	-	330	163852688	-	Mext_3273	-	UDP-glucose 4-epimerase
3232	 65.74	0	3635736..3636602	+	288	163852689	-	Mext_3274	-	UTP-glucose-1-phosphate uridylyltransferase
3233	 68.23	0	3636844..3637740	-	298	163852690	-	Mext_3275	-	N-formylglutamate amidohydrolase
3234	 61.62	-1	3638047..3638403	+	118	163852691	-	Mext_3276	-	response regulator receiver
3235	 68.99	0	3638526..3638783	+	85	163852692	-	Mext_3277	-	glutaredoxin 3
3236	 70.21	0	3638780..3639625	+	281	163852693	-	Mext_3278	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3237	 72.54	0	3639746..3640222	+	158	163852694	-	Mext_3279	-	hypothetical protein
3238	 69.95	0	3640241..3641305	-	354	163852695	-	Mext_3280	-	PAS sensor protein
3239	 67.88	0	3641480..3642139	+	219	163852696	-	Mext_3281	-	peptide methionine sulfoxide reductase
3240	 62.10	-1	3642244..3642747	+	167	163852697	-	Mext_3282	-	hypothetical protein
3241	 62.75	-1	3642834..3643292	-	152	163852698	-	Mext_3283	-	hypothetical protein
3242	 73.55	+1	3643324..3644253	-	309	163852699	-	Mext_3284	-	penicillin-insensitive murein endopeptidase
3243	 69.95	0	3644380..3644775	+	131	163852700	-	Mext_3285	-	PRC-barrel domain-containing protein
3244	 70.11	0	3644806..3645153	-	115	163852701	-	Mext_3286	-	hypothetical protein
3245	 70.77	0	3645239..3646480	-	413	163852702	-	Mext_3287	-	Na+/H+ antiporter NhaA
3246	 71.50	0	3646552..3647193	-	213	163852703	-	Mext_3288	-	redoxin domain-containing protein
3247	 70.33	0	3647233..3648624	+	463	163852704	-	Mext_3289	-	argininosuccinate lyase
3248	 69.87	0	3648721..3649032	+	103	163852705	-	Mext_3290	-	hypothetical protein
3249	 71.05	0	3649188..3649871	+	227	163852706	-	Mext_3291	-	hypothetical protein
3250	 72.73	0	3650031..3650294	-	87	163852707	-	Mext_3292	-	hypothetical protein
3251	 71.95	0	3650736..3651473	-	245	163852708	-	Mext_3293	-	HAD family hydrolase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.