IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
270	 68.87	0	308527..309840	+	437	163849727	-	Mext_0275	-	recombination factor protein RarA
271	 70.95	0	309876..311369	+	497	163849728	-	Mext_0276	-	carboxypeptidase Taq
272	 69.79	0	311466..312779	+	437	163849729	-	Mext_0277	-	molecular chaperone, HSP70 class
273	 71.43	0	313007..314413	+	468	163849730	-	Mext_0278	-	RluA family pseudouridine synthase
274	 70.92	0	314497..314919	+	140	163849731	-	Mext_0279	-	hypothetical protein
275	 67.52	0	315058..315759	+	233	163849732	-	Mext_0280	-	HAD family hydrolase
276	 72.76	0	315820..316623	+	267	163849733	-	Mext_0281	-	ATP12 ATPase
277	 66.01	0	317218..318750	+	510	163849734	-	Mext_0282	-	carboxyl transferase
278	 65.05	0	318812..319366	-	184	163849735	-	Mext_0283	-	hypothetical protein
279	 68.67	0	319803..320450	+	215	163849736	-	Mext_0284	-	regulatory protein TetR
280	 65.39	0	320484..321503	+	339	163849737	-	Mext_0285	-	ketol-acid reductoisomerase
281	 64.22	-1	321671..322324	+	217	163849738	-	Mext_0286	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
282	 64.48	0	322436..323260	+	274	163849739	-	Mext_0287	-	hypothetical protein
283	 67.51	0	323333..324631	-	432	163849740	-	Mext_0288	-	crotonyl-CoA reductase
284	 64.22	-1	324812..326284	-	490	163849741	-	Mext_0289	-	catalase
285	 67.59	0	326651..328717	+	688	163849742	-	Mext_0290	-	methylmalonyl-CoA mutase, large subunit
286	 63.17	-1	328827..329513	-	228	163849743	-	Mext_0291	-	hypothetical protein
287	 67.68	0	329810..330598	-	262	163849744	-	Mext_0292	-	short-chain dehydrogenase/reductase SDR
288	 68.48	0	330665..330994	+	109	163849745	-	Mext_0293	-	regulatory protein ArsR
289	 66.76	0	331146..332207	+	353	163849746	-	Mext_0294	-	tryptophanyl-tRNA synthetase
290	 64.94	0	332221..332394	-	57	163849747	-	Mext_0295	-	hypothetical protein
291	 63.70	-1	332554..333159	+	201	163849748	-	Mext_0296	-	3-isopropylmalate dehydratase, small subunit
292	 73.30	+1	333167..333784	-	205	163849749	-	Mext_0297	-	peptidase C15 pyroglutamyl peptidase I
293	 72.05	0	333781..334821	-	346	163849750	-	Mext_0298	-	arginine/ornithine transport system ATPase
294	 71.98	0	334917..335951	+	344	163849751	-	Mext_0299	-	protein of unknown function DUF900 hydrolase family protein
295	 63.79	-1	336137..336484	+	115	163849752	-	Mext_0300	-	hypothetical protein
296	 70.33	0	336562..338442	-	626	163849753	-	Mext_0301	-	peptidase S9 prolyl oligopeptidase
297	 67.97	0	338511..339428	-	305	163849754	-	Mext_0302	-	ErfK/YbiS/YcfS/YnhG family protein
298	 75.29	+1	339770..340024	+	84	163849755	-	Mext_0303	-	hypothetical protein
299	 71.55	0	340156..341403	+	415	163849756	-	Mext_0304	-	nuclease SbcCD, D subunit
300	 75.50	+1	341415..345161	+	1248	163849757	-	Mext_0305	-	SMC domain-containing protein
301	 66.74	0	345364..346683	+	439	163849758	-	Mext_0306	-	major facilitator transporter
302	 69.40	0	346765..347532	-	255	163849759	-	Mext_0307	-	competence protein F
303	 69.30	0	347562..347789	-	75	163849760	-	Mext_0308	-	hypothetical protein
304	 71.03	0	347993..348886	+	297	163849761	-	Mext_0309	-	methyltransferase type 11
305	 69.47	0	348883..349239	+	118	163849762	-	Mext_0310	-	hypothetical protein
306	 71.60	0	349248..350789	-	513	163849763	-	Mext_0311	-	hypothetical protein
307	 70.74	0	350821..351237	-	138	163849764	-	Mext_0312	-	mutator MutT protein
308	 71.65	0	351234..351956	-	240	163849765	-	Mext_0313	-	hypothetical protein
309	 71.33	0	351953..353197	-	414	163849766	-	Mext_0314	-	arginine biosynthesis bifunctional protein ArgJ
310	 67.09	0	353579..354049	+	156	163849767	-	Mext_0315	-	sensor histidine kinase
311	 69.55	0	354142..354696	+	184	163849768	-	Mext_0316	-	glutathione peroxidase
312	 70.06	0	354943..355266	+	107	163849769	-	Mext_0317	-	hypothetical protein
313	 69.55	0	355457..355699	+	80	163849770	-	Mext_0318	-	hypothetical protein
314	 72.94	+1	355706..358813	-	1035	163849771	-	Mext_0319	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
315	 74.60	+1	358901..362428	-	1175	163849772	-	Mext_0320	-	hypothetical protein
316	 68.25	0	362589..362840	-	83	163849773	-	Mext_0321	-	hypothetical protein
317	 68.89	0	362956..365343	+	795	163849774	-	Mext_0322	-	UvrD/REP helicase
318	 62.76	-1	365740..366456	+	238	163849775	-	Mext_0323	-	PhoH family protein
319	 65.32	0	366527..367267	-	246	163849776	-	Mext_0324	-	MIP family channel protein
320	 70.58	0	367638..368531	-	297	163849777	-	Mext_0325	-	exonuclease RNase T and DNA polymerase III
321	 71.32	0	368582..371545	-	987	163849778	-	Mext_0326	-	(glutamate--ammonia-ligase) adenylyltransferase
322	 74.12	+1	371787..372551	-	254	163849779	-	Mext_0327	-	hypothetical protein
323	 70.72	0	373127..374557	-	476	163849780	-	Mext_0328	-	ATPase domain-containing protein
324	 68.81	0	374554..375252	-	232	163849781	-	Mext_0329	-	response regulator receiver
325	 67.84	0	375279..375788	-	169	163849782	-	Mext_0330	-	OsmC family protein
326	 72.18	0	375865..376644	-	259	163849783	-	Mext_0331	-	ABC transporter related
327	 72.26	0	376652..377491	-	279	163849784	-	Mext_0332	-	binding-protein-dependent transport systems inner membrane component
328	 70.62	0	377552..378184	-	210	163849785	-	Mext_0333	-	lysine exporter protein LysE/YggA
329	 68.72	0	378193..379167	-	324	163849786	-	Mext_0334	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
330	 67.38	0	379327..382113	+	928	163849787	-	Mext_0335	-	PII uridylyl-transferase
331	 69.29	0	382205..382813	+	202	163849788	-	Mext_0336	-	ribulose-phosphate 3-epimerase
332	 65.09	0	382921..383238	-	105	163849789	-	Mext_0337	-	hypothetical protein
333	 62.68	-1	383228..383503	-	91	163849790	-	Mext_0338	-	hypothetical protein
334	 67.95	0	383595..384452	-	285	163849791	-	Mext_0339	-	prephenate dehydratase
335	 70.16	0	384469..385212	-	247	163849792	-	Mext_0340	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
336	 70.15	0	385520..386437	+	305	163849793	-	Mext_0341	-	cytochrome c class I
337	 66.72	0	386610..388523	+	637	163849794	-	Mext_0342	-	extracellular solute-binding protein
338	 69.23	0	388520..390394	+	624	163849795	-	Mext_0343	-	extracellular solute-binding protein
339	 63.84	-1	390404..391501	+	365	163849796	-	Mext_0344	-	binding-protein-dependent transport systems inner membrane component
340	 75.00	+1	391522..392073	+	183	163849797	-	Mext_0345	-	GCN5-related N-acetyltransferase
341	 70.91	0	392187..393719	+	510	163849798	-	Mext_0346	-	AMP-dependent synthetase and ligase
342	 69.22	0	393780..394562	+	260	163849799	-	Mext_0347	-	glycosyl transferase family protein
343	 63.94	-1	394798..396705	+	635	163849800	-	Mext_0348	-	integrase family protein
344	 66.12	0	397030..398124	-	364	163849801	-	Mext_0349	-	flagellin domain-containing protein
345	 63.98	-1	400171..401100	+	309	163849802	-	Mext_0352	-	transposase IS116/IS110/IS902 family protein
346	 69.50	0	401448..402047	+	199	163849803	-	Mext_0353	-	hypothetical protein
347	 66.93	0	402106..402867	+	253	163849804	-	Mext_0354	-	hypothetical protein
348	 65.97	0	402938..403081	+	47	163849805	-	Mext_0355	-	hypothetical protein
349	 66.67	0	403091..403501	+	136	163849806	-	Mext_0356	-	hypothetical protein
350	 64.38	-1	403467..403859	+	130	163849807	-	Mext_0357	-	hypothetical protein
351	 58.27	-2	404320..405831	+	503	163849808	-	Mext_0358	-	hemolysin-type calcium-binding region
352	 67.49	0	406060..406302	-	80	163849809	-	Mext_0359	-	hypothetical protein
353	 66.67	0	406305..406559	-	84	163849810	-	Mext_0360	-	hypothetical protein
354	 66.45	0	406700..407155	+	151	163849811	-	Mext_0361	-	peptidase S24/S26 domain-containing protein
355	 68.23	0	407420..407803	+	127	163849812	-	Mext_0362	-	DNA-directed DNA polymerase
356	 68.22	0	408475..409311	+	278	163849813	-	Mext_0363	-	PAS sensor protein
357	 68.27	0	409588..409962	+	124	163849814	-	Mext_0364	-	CsbD family protein
358	 73.25	+1	410006..410917	+	303	163849815	-	Mext_0365	-	hypothetical protein
359	 64.71	0	411008..411211	+	67	163849816	-	Mext_0366	-	CsbD family protein
360	 72.92	+1	411286..411669	+	127	163849817	-	Mext_0367	-	CsbD family protein
361	 71.77	0	411890..412810	-	306	163849818	-	Mext_0368	-	hypothetical protein
362	 70.49	0	412821..413996	-	391	163849819	-	Mext_0369	-	acetylornithine deacetylase (ArgE)
363	 67.43	0	413993..414385	-	130	163849820	-	Mext_0370	-	ApaG
364	 74.22	+1	414553..415002	+	149	163849821	-	Mext_0371	-	hypothetical protein
365	 70.87	0	414999..416117	+	372	163849822	-	Mext_0372	-	2'-deoxycytidine 5'-triphosphate deaminase
366	 66.10	0	416164..417051	-	295	163849823	-	Mext_0373	-	putative transport protein, YfdC-like protein
367	 69.38	0	417163..417900	-	245	163849824	-	Mext_0374	-	molybdopterin binding domain-containing protein
368	 67.60	0	417984..418730	+	248	163849825	-	Mext_0375	-	sugar fermentation stimulation protein
369	 67.48	0	418687..419667	-	326	163849826	-	Mext_0376	-	FkbM family methyltransferase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.