IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2851	 67.83	0	3238397..3238654	-	85	163852308	-	Mext_2890	-	hypothetical protein
2852	 67.15	0	3238841..3241507	-	888	163852309	-	Mext_2891	-	pyruvate phosphate dikinase
2853	 58.82	-2	3241725..3241877	-	50	163852310	-	Mext_2892	-	hypothetical protein
2854	 68.29	0	3242113..3242790	-	225	163852311	-	Mext_2893	-	ErfK/YbiS/YcfS/YnhG family protein
2855	 67.57	0	3242977..3243420	+	147	163852312	-	Mext_2894	-	glyoxalase/bleomycin resistance protein/dioxygenase
2856	 66.67	0	3243517..3243777	+	86	163852313	-	Mext_2895	-	hypothetical protein
2857	 65.64	0	3243823..3244407	-	194	163852314	-	Mext_2896	-	cyclic nucleotide-binding
2858	 60.32	-2	3244867..3245055	+	62	163852315	-	Mext_2898	-	hypothetical protein
2859	 66.67	0	3245178..3245651	-	157	163852316	-	Mext_2899	-	regulatory protein MarR
2860	 71.15	0	3245776..3246555	+	259	163852317	-	Mext_2900	-	hypothetical protein
2861	 71.81	0	3246575..3247507	-	310	163852318	-	Mext_2901	-	beta-lactamase domain-containing protein
2862	 71.03	0	3247587..3248618	-	343	163852319	-	Mext_2902	-	hypothetical protein
2863	 64.97	0	3249318..3249494	+	58	163852320	-	Mext_2903	-	hypothetical protein
2864	 62.00	-1	3249573..3249722	-	49	163852321	-	Mext_2904	-	hypothetical protein
2865	 65.99	0	3249896..3250777	+	293	163852322	-	Mext_2905	-	two-component response regulator
2866	 71.07	0	3251238..3251600	+	120	163852323	-	Mext_2906	-	hypothetical protein
2867	 70.74	0	3251700..3252239	-	179	163852324	-	Mext_2907	-	hypothetical protein
2868	 69.07	0	3252296..3253753	+	485	163852325	-	Mext_2908	-	aminotransferase class-III
2869	 68.32	0	3253967..3254329	+	120	163852326	-	Mext_2909	-	hypothetical protein
2870	 69.95	0	3254367..3255281	+	304	163852327	-	Mext_2910	-	metallophosphoesterase
2871	 71.23	0	3255297..3255515	-	72	163852328	-	Mext_2911	-	hypothetical protein
2872	 70.78	0	3255572..3256009	-	145	163852329	-	Mext_2912	-	GCN5-related N-acetyltransferase
2873	 72.71	0	3256006..3256932	-	308	163852330	-	Mext_2913	-	alcohol dehydrogenase
2874	 68.75	0	3256982..3257269	-	95	163852331	-	Mext_2914	-	hypothetical protein
2875	 68.74	0	3257431..3258585	-	384	163852332	-	Mext_2915	-	ribonuclease D
2876	 74.10	+1	3258681..3259070	-	129	163852333	-	Mext_2916	-	hypothetical protein
2877	 68.97	0	3259240..3260496	+	418	163852334	-	Mext_2917	-	Serine-type D-Ala-D-Ala carboxypeptidase
2878	 73.62	+1	3260536..3262434	-	632	163852335	-	Mext_2918	-	AsmA family protein
2879	 66.53	0	3262820..3263557	+	245	163852336	-	Mext_2919	-	3-oxoacid CoA-transferase, A subunit
2880	 64.85	0	3263666..3264325	+	219	163852337	-	Mext_2920	-	3-oxoacid CoA-transferase, B subunit
2881	 70.83	0	3264497..3264904	+	135	163852338	-	Mext_2921	-	hypothetical protein
2882	 76.27	+1	3265078..3265452	+	124	163852339	-	Mext_2922	-	hypothetical protein
2883	 71.22	0	3265492..3266874	+	460	163852340	-	Mext_2923	-	PepSY-associated TM helix domain-containing protein
2884	 70.18	0	3266935..3269265	+	776	163852341	-	Mext_2924	-	TonB-dependent receptor
2885	 72.83	+1	3269331..3270287	-	318	163852342	-	Mext_2925	-	hypothetical protein
2886	 74.75	+1	3270262..3271077	-	271	163852343	-	Mext_2926	-	ABC transporter related
2887	 73.39	+1	3271074..3272114	-	346	163852344	-	Mext_2927	-	transport system permease protein
2888	 72.54	0	3272111..3272944	-	277	163852345	-	Mext_2928	-	periplasmic binding protein
2889	 64.61	0	3273216..3273458	+	80	163852346	-	Mext_2929	-	prevent-host-death family protein
2890	 64.55	0	3273458..3273883	+	141	163852347	-	Mext_2930	-	PilT domain-containing protein
2891	 66.92	0	3273933..3275498	-	521	163852348	-	Mext_2931	-	bifunctional GMP synthase/glutamine amidotransferase protein
2892	 70.26	0	3276076..3276687	-	203	163852349	-	Mext_2932	-	phosphoesterase PA-phosphatase related
2893	 72.30	0	3276784..3277812	-	342	163852350	-	Mext_2933	-	hypothetical protein
2894	 71.96	0	3277948..3279327	-	459	163852351	-	Mext_2934	-	Fmu (Sun) domain-containing protein
2895	 74.60	+1	3279393..3279581	+	62	163852352	-	Mext_2935	-	hypothetical protein
2896	 71.88	0	3279685..3280623	-	312	163852353	-	Mext_2936	-	2-dehydropantoate 2-reductase
2897	 65.99	0	3280830..3281714	+	294	163852354	-	Mext_2937	-	hypothetical protein
2898	 71.63	0	3282038..3282883	+	281	163852355	-	Mext_2938	-	hypothetical protein
2899	 69.48	0	3283393..3284883	-	496	163852356	-	Mext_2939	-	inosine-5'-monophosphate dehydrogenase
2900	 66.24	0	3285147..3286313	+	388	163852357	-	Mext_2940	-	cell cycle protein
2901	 72.61	0	3286310..3287419	+	369	163852358	-	Mext_2941	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2902	 67.66	0	3287561..3288967	+	468	163852359	-	Mext_2942	-	UDP-N-acetylmuramate--L-alanine ligase
2903	 72.05	0	3288984..3289373	-	129	163852360	-	Mext_2943	-	putative phage-related transcriptional regulator
2904	 62.80	-1	3289384..3289590	-	68	163852361	-	Mext_2944	-	hypothetical protein
2905	 71.83	0	3289686..3290615	+	309	163852362	-	Mext_2945	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2906	 65.26	0	3290659..3291582	+	307	163852363	-	Mext_2946	-	D-alanine--D-alanine ligase
2907	 70.18	0	3291549..3292487	+	312	163852364	-	Mext_2947	-	polypeptide-transport-associated domain-containing protein
2908	 72.62	0	3292613..3293872	+	419	163852365	-	Mext_2948	-	cell division protein FtsA
2909	 71.90	0	3294078..3295835	+	585	163852366	-	Mext_2949	-	cell division protein FtsZ
2910	 69.51	0	3296187..3297134	+	315	163852367	-	Mext_2950	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2911	 65.41	0	3297300..3298175	+	291	163852368	-	Mext_2951	-	putative lipoprotein
2912	 66.67	0	3298183..3298440	-	85	163852369	-	Mext_2952	-	hypothetical protein
2913	 62.72	-1	3298444..3299430	-	328	163852370	-	Mext_2953	-	hypothetical protein
2914	 72.25	0	3299586..3301286	+	566	163852371	-	Mext_2954	-	DNA repair protein RecN
2915	 68.37	0	3301283..3301576	-	97	163852372	-	Mext_2955	-	hypothetical protein
2916	 63.37	-1	3301660..3301932	-	90	163852373	-	Mext_2956	-	YiaAB two helix domain-containing protein
2917	 76.05	+1	3301964..3302656	-	230	163852374	-	Mext_2957	-	PspA/IM30 family protein
2918	 66.16	0	3302798..3305149	-	783	163852375	-	Mext_2958	-	oxidoreductase alpha (molybdopterin) subunit
2919	 72.89	+1	3305216..3306292	-	358	163852376	-	Mext_2959	-	hypothetical protein
2920	 65.83	0	3306638..3308557	+	639	163852377	-	Mext_2960	-	chaperone protein DnaK
2921	 68.39	0	3308809..3309966	+	385	163852378	-	Mext_2961	-	chaperone protein DnaJ
2922	 69.71	0	3310125..3310781	+	218	163852379	-	Mext_2962	-	phospholipid N-methyltransferase
2923	 71.47	0	3311062..3311373	+	103	163852380	-	Mext_2963	-	hypothetical protein
2924	 72.85	+1	3311400..3312710	-	436	163852381	-	Mext_2964	-	thymidine phosphorylase
2925	 72.09	0	3312707..3313480	-	257	163852382	-	Mext_2965	-	deoxyribose-phosphate aldolase
2926	 73.43	+1	3313490..3314302	-	270	163852383	-	Mext_2966	-	purine nucleoside phosphorylase
2927	 73.19	+1	3314292..3314705	-	137	163852384	-	Mext_2967	-	cytidine deaminase
2928	 70.22	0	3314850..3315074	+	74	163852385	-	Mext_2968	-	hypothetical protein
2929	 74.90	+1	3315157..3316140	-	327	163852386	-	Mext_2969	-	tetraacyldisaccharide 4'-kinase
2930	 71.65	0	3316148..3317452	-	434	163852387	-	Mext_2970	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
2931	 70.40	0	3317449..3318198	-	249	163852388	-	Mext_2971	-	hypothetical protein
2932	 72.29	0	3318387..3319382	+	331	163852389	-	Mext_2972	-	metallophosphoesterase
2933	 67.09	0	3319398..3319874	-	158	163852390	-	Mext_2973	-	response regulator receiver
2934	 72.81	+1	3320256..3321101	+	281	163852391	-	Mext_2974	-	cold-shock protein DNA-binding
2935	 72.36	0	3321229..3321474	+	81	163852392	-	Mext_2975	-	hypothetical protein
2936	 71.99	0	3321501..3322910	-	469	163852393	-	Mext_2976	-	leucyl aminopeptidase
2937	 71.85	0	3323008..3323856	+	282	163852394	-	Mext_2977	-	TPR repeat-containing protein
2938	 67.97	0	3324042..3324347	+	101	163852395	-	Mext_2978	-	ribosomal protein L28
2939	 69.57	0	3324461..3325390	+	309	163852396	-	Mext_2979	-	auxin efflux carrier
2940	 68.38	0	3325644..3327392	+	582	163852397	-	Mext_2980	-	lysyl-tRNA synthetase
2941	 72.61	0	3327539..3328093	-	184	163852398	-	Mext_2981	-	hypothetical protein
2942	 65.63	0	3328273..3329238	+	321	163852399	-	Mext_2982	-	peptide chain release factor 2
2943	 73.54	+1	3329383..3330561	-	392	163852400	-	Mext_2983	-	peptidase M23B
2944	 61.57	-1	3330736..3331245	-	169	163852401	-	Mext_2984	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2945	 70.80	0	3331282..3334809	+	1175	163852402	-	Mext_2985	-	hypothetical protein
2946	 69.64	0	3335407..3336483	+	358	163852403	-	Mext_2986	-	fatty acid desaturase
2947	 66.12	0	3336545..3337816	-	423	163852404	-	Mext_2987	-	tyrosyl-tRNA synthetase
2948	 70.12	0	3337963..3339090	+	375	163852405	-	Mext_2988	-	anhydro-N-acetylmuramic acid kinase
2949	 72.73	0	3339100..3339693	+	197	163852406	-	Mext_2989	-	hypothetical protein
2950	 69.85	0	3339759..3340859	+	366	163852407	-	Mext_2990	-	chorismate synthase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.