IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2806	 74.59	+1	3192532..3193617	+	361	163852263	-	Mext_2845	-	molybdopterin binding domain-containing protein
2807	 72.99	+1	3193614..3195590	+	658	163852264	-	Mext_2846	-	molybdenum cofactor synthesis domain-containing protein
2808	 70.95	0	3195587..3196123	+	178	163852265	-	Mext_2847	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2809	 73.78	+1	3196127..3197377	+	416	163852266	-	Mext_2848	-	molybdenum cofactor synthesis domain-containing protein
2810	 71.58	0	3197435..3198472	-	345	163852267	-	Mext_2849	-	regulatory protein LysR
2811	 69.37	0	3198553..3199293	+	246	163852268	-	Mext_2850	-	binding-protein-dependent transport systems inner membrane component
2812	 73.36	+1	3199290..3200006	+	238	163852269	-	Mext_2851	-	ABC transporter related
2813	 68.36	0	3199979..3200806	+	275	163852270	-	Mext_2852	-	extracellular solute-binding protein
2814	 71.31	0	3200975..3201211	-	78	163852271	-	Mext_2853	-	hypothetical protein
2815	 69.92	0	3201255..3201899	-	214	163852272	-	Mext_2854	-	PRC-barrel domain-containing protein
2816	 71.20	0	3201968..3203644	-	558	163852273	-	Mext_2855	-	glucan biosynthesis protein G
2817	 72.05	0	3203679..3205610	+	643	163852274	-	Mext_2856	-	glucosyltransferase MdoH
2818	 68.16	0	3205700..3206167	-	155	163852275	-	Mext_2857	-	hypothetical protein
2819	 72.58	0	3206257..3207474	-	405	163852276	-	Mext_2858	-	cystathionine gamma-synthase
2820	 69.57	0	3207572..3208087	+	171	163852277	-	Mext_2859	-	TspO/MBR family protein
2821	 66.67	0	3208248..3208613	-	121	163852278	-	Mext_2860	-	response regulator receiver
2822	 66.49	0	3208777..3209346	-	189	163852279	-	Mext_2861	-	hypoxanthine phosphoribosyltransferase
2823	 72.99	+1	3209535..3210356	-	273	163852280	-	Mext_2862	-	Zinc finger-domain-containing protein
2824	 69.69	0	3210400..3211161	+	253	163852281	-	Mext_2863	-	cell division ATP-binding protein FtsE
2825	 70.85	0	3211158..3212138	+	326	163852282	-	Mext_2864	-	hypothetical protein
2826	 69.95	0	3212233..3213084	+	283	163852283	-	Mext_2865	-	hypothetical protein
2827	 68.27	0	3213156..3213530	-	124	163852284	-	Mext_2866	-	response regulator receiver
2828	 71.34	0	3213802..3214935	+	377	163852285	-	Mext_2867	-	gamma-glutamyl kinase
2829	 71.82	0	3215060..3216358	+	432	163852286	-	Mext_2868	-	gamma-glutamyl phosphate reductase
2830	 70.43	0	3216414..3216971	+	185	163852287	-	Mext_2869	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
2831	 65.02	0	3217415..3217717	+	100	163852288	-	Mext_2870	-	iojap-like protein
2832	 70.82	0	3217726..3218424	-	232	163852289	-	Mext_2871	-	hypothetical protein
2833	 68.63	0	3218475..3219035	-	186	163852290	-	Mext_2872	-	putative transcriptional regulatory protein
2834	 68.30	0	3219123..3220163	-	346	163852291	-	Mext_2873	-	aldose 1-epimerase
2835	 71.79	0	3220259..3222052	-	597	163852292	-	Mext_2874	-	ABC transporter related
2836	 69.68	0	3222326..3223255	+	309	163852293	-	Mext_2875	-	periplasmic solute binding protein
2837	 70.24	0	3223378..3223629	-	83	163852294	-	Mext_2876	-	molybdopterin converting factor, subunit 1
2838	 71.10	0	3223684..3224382	-	232	163852295	-	Mext_2877	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2839	 67.50	0	3224369..3226417	-	682	163852296	-	Mext_2878	-	excinuclease ABC, C subunit
2840	 65.15	0	3226513..3227238	-	241	163852297	-	Mext_2879	-	hypothetical protein
2841	 71.65	0	3227468..3228190	+	240	163852298	-	Mext_2880	-	ErfK/YbiS/YcfS/YnhG family protein
2842	 71.72	0	3228270..3229001	-	243	163852299	-	Mext_2881	-	putative periplasmic ligand-binding sensor protein
2843	 69.19	0	3229330..3230202	-	290	163852300	-	Mext_2882	-	porin
2844	 67.58	0	3230599..3231366	-	255	163852301	-	Mext_2883	-	hypothetical protein
2845	 74.68	+1	3231408..3232493	-	361	163852302	-	Mext_2884	-	hypothetical protein
2846	 69.14	0	3232496..3233386	-	296	163852303	-	Mext_2885	-	prolipoprotein diacylglyceryl transferase
2847	 70.48	0	3233528..3234208	+	226	163852304	-	Mext_2886	-	MgtC/SapB transporter
2848	 69.91	0	3234312..3235943	+	543	163852305	-	Mext_2887	-	phosphoglucomutase
2849	 71.31	0	3235940..3237211	+	423	163852306	-	Mext_2888	-	hypothetical protein
2850	 70.64	0	3237385..3238290	-	301	163852307	-	Mext_2889	-	cell wall hydrolase SleB
2851	 67.83	0	3238397..3238654	-	85	163852308	-	Mext_2890	-	hypothetical protein
2852	 67.15	0	3238841..3241507	-	888	163852309	-	Mext_2891	-	pyruvate phosphate dikinase
2853	 58.82	-2	3241725..3241877	-	50	163852310	-	Mext_2892	-	hypothetical protein
2854	 68.29	0	3242113..3242790	-	225	163852311	-	Mext_2893	-	ErfK/YbiS/YcfS/YnhG family protein
2855	 67.57	0	3242977..3243420	+	147	163852312	-	Mext_2894	-	glyoxalase/bleomycin resistance protein/dioxygenase
2856	 66.67	0	3243517..3243777	+	86	163852313	-	Mext_2895	-	hypothetical protein
2857	 65.64	0	3243823..3244407	-	194	163852314	-	Mext_2896	-	cyclic nucleotide-binding
2858	 60.32	-2	3244867..3245055	+	62	163852315	-	Mext_2898	-	hypothetical protein
2859	 66.67	0	3245178..3245651	-	157	163852316	-	Mext_2899	-	regulatory protein MarR
2860	 71.15	0	3245776..3246555	+	259	163852317	-	Mext_2900	-	hypothetical protein
2861	 71.81	0	3246575..3247507	-	310	163852318	-	Mext_2901	-	beta-lactamase domain-containing protein
2862	 71.03	0	3247587..3248618	-	343	163852319	-	Mext_2902	-	hypothetical protein
2863	 64.97	0	3249318..3249494	+	58	163852320	-	Mext_2903	-	hypothetical protein
2864	 62.00	-1	3249573..3249722	-	49	163852321	-	Mext_2904	-	hypothetical protein
2865	 65.99	0	3249896..3250777	+	293	163852322	-	Mext_2905	-	two-component response regulator
2866	 71.07	0	3251238..3251600	+	120	163852323	-	Mext_2906	-	hypothetical protein
2867	 70.74	0	3251700..3252239	-	179	163852324	-	Mext_2907	-	hypothetical protein
2868	 69.07	0	3252296..3253753	+	485	163852325	-	Mext_2908	-	aminotransferase class-III
2869	 68.32	0	3253967..3254329	+	120	163852326	-	Mext_2909	-	hypothetical protein
2870	 69.95	0	3254367..3255281	+	304	163852327	-	Mext_2910	-	metallophosphoesterase
2871	 71.23	0	3255297..3255515	-	72	163852328	-	Mext_2911	-	hypothetical protein
2872	 70.78	0	3255572..3256009	-	145	163852329	-	Mext_2912	-	GCN5-related N-acetyltransferase
2873	 72.71	0	3256006..3256932	-	308	163852330	-	Mext_2913	-	alcohol dehydrogenase
2874	 68.75	0	3256982..3257269	-	95	163852331	-	Mext_2914	-	hypothetical protein
2875	 68.74	0	3257431..3258585	-	384	163852332	-	Mext_2915	-	ribonuclease D
2876	 74.10	+1	3258681..3259070	-	129	163852333	-	Mext_2916	-	hypothetical protein
2877	 68.97	0	3259240..3260496	+	418	163852334	-	Mext_2917	-	Serine-type D-Ala-D-Ala carboxypeptidase
2878	 73.62	+1	3260536..3262434	-	632	163852335	-	Mext_2918	-	AsmA family protein
2879	 66.53	0	3262820..3263557	+	245	163852336	-	Mext_2919	-	3-oxoacid CoA-transferase, A subunit
2880	 64.85	0	3263666..3264325	+	219	163852337	-	Mext_2920	-	3-oxoacid CoA-transferase, B subunit
2881	 70.83	0	3264497..3264904	+	135	163852338	-	Mext_2921	-	hypothetical protein
2882	 76.27	+1	3265078..3265452	+	124	163852339	-	Mext_2922	-	hypothetical protein
2883	 71.22	0	3265492..3266874	+	460	163852340	-	Mext_2923	-	PepSY-associated TM helix domain-containing protein
2884	 70.18	0	3266935..3269265	+	776	163852341	-	Mext_2924	-	TonB-dependent receptor
2885	 72.83	+1	3269331..3270287	-	318	163852342	-	Mext_2925	-	hypothetical protein
2886	 74.75	+1	3270262..3271077	-	271	163852343	-	Mext_2926	-	ABC transporter related
2887	 73.39	+1	3271074..3272114	-	346	163852344	-	Mext_2927	-	transport system permease protein
2888	 72.54	0	3272111..3272944	-	277	163852345	-	Mext_2928	-	periplasmic binding protein
2889	 64.61	0	3273216..3273458	+	80	163852346	-	Mext_2929	-	prevent-host-death family protein
2890	 64.55	0	3273458..3273883	+	141	163852347	-	Mext_2930	-	PilT domain-containing protein
2891	 66.92	0	3273933..3275498	-	521	163852348	-	Mext_2931	-	bifunctional GMP synthase/glutamine amidotransferase protein
2892	 70.26	0	3276076..3276687	-	203	163852349	-	Mext_2932	-	phosphoesterase PA-phosphatase related
2893	 72.30	0	3276784..3277812	-	342	163852350	-	Mext_2933	-	hypothetical protein
2894	 71.96	0	3277948..3279327	-	459	163852351	-	Mext_2934	-	Fmu (Sun) domain-containing protein
2895	 74.60	+1	3279393..3279581	+	62	163852352	-	Mext_2935	-	hypothetical protein
2896	 71.88	0	3279685..3280623	-	312	163852353	-	Mext_2936	-	2-dehydropantoate 2-reductase
2897	 65.99	0	3280830..3281714	+	294	163852354	-	Mext_2937	-	hypothetical protein
2898	 71.63	0	3282038..3282883	+	281	163852355	-	Mext_2938	-	hypothetical protein
2899	 69.48	0	3283393..3284883	-	496	163852356	-	Mext_2939	-	inosine-5'-monophosphate dehydrogenase
2900	 66.24	0	3285147..3286313	+	388	163852357	-	Mext_2940	-	cell cycle protein
2901	 72.61	0	3286310..3287419	+	369	163852358	-	Mext_2941	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2902	 67.66	0	3287561..3288967	+	468	163852359	-	Mext_2942	-	UDP-N-acetylmuramate--L-alanine ligase
2903	 72.05	0	3288984..3289373	-	129	163852360	-	Mext_2943	-	putative phage-related transcriptional regulator
2904	 62.80	-1	3289384..3289590	-	68	163852361	-	Mext_2944	-	hypothetical protein
2905	 71.83	0	3289686..3290615	+	309	163852362	-	Mext_2945	-	UDP-N-acetylenolpyruvoylglucosamine reductase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.