IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2761	 67.16	0	3136238..3137257	+	339	163852218	-	Mext_2799	-	lipoyl synthase
2762	 63.62	-1	3137264..3137722	+	152	163852219	-	Mext_2800	-	cyclase/dehydrase
2763	 68.31	0	3137807..3138232	-	141	163852220	-	Mext_2801	-	AsnC/Lrp family regulatory protein
2764	 67.25	0	3138363..3139394	+	343	163852221	-	Mext_2802	-	ornithine cyclodeaminase
2765	 61.77	-1	3139708..3140748	+	346	163852222	-	Mext_2803	-	Beta-ketoacyl-acyl-carrier-protein synthase I
2766	 60.68	-1	3140768..3141001	+	77	163852223	-	Mext_2804	-	hypothetical protein
2767	 64.47	-1	3141002..3142048	+	348	163852224	-	Mext_2805	-	Beta-ketoacyl-acyl-carrier-protein synthase I
2768	 65.22	0	3142045..3142806	+	253	163852225	-	Mext_2806	-	short-chain dehydrogenase/reductase SDR
2769	 60.49	-1	3142735..3143883	-	382	163852226	-	Mext_2807	-	Rieske (2Fe-2S) domain-containing protein
2770	 63.75	-1	3144290..3144940	+	216	163852227	-	Mext_2808	-	hexapeptide transferase family protein
2771	 66.85	0	3145131..3147284	-	717	163852228	-	Mext_2809	-	TPR repeat-containing protein
2772	 71.39	0	3147471..3147809	-	112	163852229	-	Mext_2810	-	hypothetical protein
2773	 70.75	0	3147806..3149593	-	595	163852230	-	Mext_2811	-	ABC transporter related
2774	 67.27	0	3150617..3151114	+	165	163852231	-	Mext_2813	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2775	 71.81	0	3151111..3152160	+	349	163852232	-	Mext_2814	-	molybdopterin dehydrogenase FAD-binding
2776	 70.68	0	3152153..3154396	+	747	163852233	-	Mext_2815	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
2777	 71.40	0	3154545..3155072	-	175	163852234	-	Mext_2816	-	CinA domain-containing protein
2778	 71.76	0	3155069..3156403	-	444	163852235	-	Mext_2817	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2779	 73.18	+1	3156531..3157559	+	342	163852236	-	Mext_2818	-	NifR3 family TIM-barrel protein
2780	 68.61	0	3157559..3158692	+	377	163852237	-	Mext_2819	-	PAS sensor protein
2781	 68.77	0	3158703..3160175	+	490	163852238	-	Mext_2820	-	nitrogen regulation protein NR(I)
2782	 72.22	0	3160303..3161940	+	545	163852239	-	Mext_2821	-	helicase domain-containing protein
2783	 68.12	0	3162004..3164403	+	799	163852240	-	Mext_2822	-	PAS sensor protein
2784	 68.85	0	3164400..3165770	+	456	163852241	-	Mext_2823	-	sigma-54 factor interaction domain-containing protein
2785	 57.65	-2	3166078..3166332	+	84	163852242	-	Mext_2824	-	RNA chaperone Hfq
2786	 69.70	0	3166430..3167845	+	471	163852243	-	Mext_2825	-	GTP-binding proten HflX
2787	 70.17	0	3167992..3169560	-	522	163852244	-	Mext_2826	-	sulphate transporter
2788	 66.67	0	3169570..3170325	-	251	163852245	-	Mext_2827	-	carbonate dehydratase
2789	 69.78	0	3170622..3170942	-	106	163852246	-	Mext_2828	-	hypothetical protein
2790	 61.50	-1	3171775..3172161	-	128	163852247	-	Mext_2829	-	hypothetical protein
2791	 73.81	+1	3172191..3172568	-	125	163852248	-	Mext_2830	-	hypothetical protein
2792	 70.00	0	3172595..3175771	-	1058	163852249	-	Mext_2831	-	acriflavin resistance protein
2793	 72.63	0	3175885..3177612	-	575	163852250	-	Mext_2832	-	RND family efflux transporter MFP subunit
2794	 72.10	0	3177684..3178088	-	134	163852251	-	Mext_2833	-	hypothetical protein
2795	 64.21	-1	3178708..3179196	+	162	163852252	-	Mext_2834	-	ROSMUCR transcriptional regulator
2796	 69.73	0	3179248..3179835	+	195	163852253	-	Mext_2835	-	CheW domain-containing protein
2797	 70.58	0	3179847..3181304	+	485	163852254	-	Mext_2836	-	protein-glutamate O-methyltransferase
2798	 72.94	+1	3181301..3181858	+	185	163852255	-	Mext_2837	-	CheW domain-containing protein
2799	 69.24	0	3181939..3183687	+	582	163852256	-	Mext_2838	-	chemotaxis sensory transducer
2800	 72.50	0	3183712..3185958	+	748	163852257	-	Mext_2839	-	response regulator receiver
2801	 70.72	0	3185955..3187040	+	361	163852258	-	Mext_2840	-	protein-glutamate methylesterase
2802	 69.26	0	3187037..3188770	+	577	163852259	-	Mext_2841	-	ATPase domain-containing protein
2803	 70.79	0	3188767..3190635	+	622	163852260	-	Mext_2842	-	PAS sensor protein
2804	 64.07	-1	3190733..3190963	+	76	163852261	-	Mext_2843	-	metallothionein family protein
2805	 73.70	+1	3190991..3192313	-	440	163852262	-	Mext_2844	-	WD-40 repeat-containing protein
2806	 74.59	+1	3192532..3193617	+	361	163852263	-	Mext_2845	-	molybdopterin binding domain-containing protein
2807	 72.99	+1	3193614..3195590	+	658	163852264	-	Mext_2846	-	molybdenum cofactor synthesis domain-containing protein
2808	 70.95	0	3195587..3196123	+	178	163852265	-	Mext_2847	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2809	 73.78	+1	3196127..3197377	+	416	163852266	-	Mext_2848	-	molybdenum cofactor synthesis domain-containing protein
2810	 71.58	0	3197435..3198472	-	345	163852267	-	Mext_2849	-	regulatory protein LysR
2811	 69.37	0	3198553..3199293	+	246	163852268	-	Mext_2850	-	binding-protein-dependent transport systems inner membrane component
2812	 73.36	+1	3199290..3200006	+	238	163852269	-	Mext_2851	-	ABC transporter related
2813	 68.36	0	3199979..3200806	+	275	163852270	-	Mext_2852	-	extracellular solute-binding protein
2814	 71.31	0	3200975..3201211	-	78	163852271	-	Mext_2853	-	hypothetical protein
2815	 69.92	0	3201255..3201899	-	214	163852272	-	Mext_2854	-	PRC-barrel domain-containing protein
2816	 71.20	0	3201968..3203644	-	558	163852273	-	Mext_2855	-	glucan biosynthesis protein G
2817	 72.05	0	3203679..3205610	+	643	163852274	-	Mext_2856	-	glucosyltransferase MdoH
2818	 68.16	0	3205700..3206167	-	155	163852275	-	Mext_2857	-	hypothetical protein
2819	 72.58	0	3206257..3207474	-	405	163852276	-	Mext_2858	-	cystathionine gamma-synthase
2820	 69.57	0	3207572..3208087	+	171	163852277	-	Mext_2859	-	TspO/MBR family protein
2821	 66.67	0	3208248..3208613	-	121	163852278	-	Mext_2860	-	response regulator receiver
2822	 66.49	0	3208777..3209346	-	189	163852279	-	Mext_2861	-	hypoxanthine phosphoribosyltransferase
2823	 72.99	+1	3209535..3210356	-	273	163852280	-	Mext_2862	-	Zinc finger-domain-containing protein
2824	 69.69	0	3210400..3211161	+	253	163852281	-	Mext_2863	-	cell division ATP-binding protein FtsE
2825	 70.85	0	3211158..3212138	+	326	163852282	-	Mext_2864	-	hypothetical protein
2826	 69.95	0	3212233..3213084	+	283	163852283	-	Mext_2865	-	hypothetical protein
2827	 68.27	0	3213156..3213530	-	124	163852284	-	Mext_2866	-	response regulator receiver
2828	 71.34	0	3213802..3214935	+	377	163852285	-	Mext_2867	-	gamma-glutamyl kinase
2829	 71.82	0	3215060..3216358	+	432	163852286	-	Mext_2868	-	gamma-glutamyl phosphate reductase
2830	 70.43	0	3216414..3216971	+	185	163852287	-	Mext_2869	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
2831	 65.02	0	3217415..3217717	+	100	163852288	-	Mext_2870	-	iojap-like protein
2832	 70.82	0	3217726..3218424	-	232	163852289	-	Mext_2871	-	hypothetical protein
2833	 68.63	0	3218475..3219035	-	186	163852290	-	Mext_2872	-	putative transcriptional regulatory protein
2834	 68.30	0	3219123..3220163	-	346	163852291	-	Mext_2873	-	aldose 1-epimerase
2835	 71.79	0	3220259..3222052	-	597	163852292	-	Mext_2874	-	ABC transporter related
2836	 69.68	0	3222326..3223255	+	309	163852293	-	Mext_2875	-	periplasmic solute binding protein
2837	 70.24	0	3223378..3223629	-	83	163852294	-	Mext_2876	-	molybdopterin converting factor, subunit 1
2838	 71.10	0	3223684..3224382	-	232	163852295	-	Mext_2877	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2839	 67.50	0	3224369..3226417	-	682	163852296	-	Mext_2878	-	excinuclease ABC, C subunit
2840	 65.15	0	3226513..3227238	-	241	163852297	-	Mext_2879	-	hypothetical protein
2841	 71.65	0	3227468..3228190	+	240	163852298	-	Mext_2880	-	ErfK/YbiS/YcfS/YnhG family protein
2842	 71.72	0	3228270..3229001	-	243	163852299	-	Mext_2881	-	putative periplasmic ligand-binding sensor protein
2843	 69.19	0	3229330..3230202	-	290	163852300	-	Mext_2882	-	porin
2844	 67.58	0	3230599..3231366	-	255	163852301	-	Mext_2883	-	hypothetical protein
2845	 74.68	+1	3231408..3232493	-	361	163852302	-	Mext_2884	-	hypothetical protein
2846	 69.14	0	3232496..3233386	-	296	163852303	-	Mext_2885	-	prolipoprotein diacylglyceryl transferase
2847	 70.48	0	3233528..3234208	+	226	163852304	-	Mext_2886	-	MgtC/SapB transporter
2848	 69.91	0	3234312..3235943	+	543	163852305	-	Mext_2887	-	phosphoglucomutase
2849	 71.31	0	3235940..3237211	+	423	163852306	-	Mext_2888	-	hypothetical protein
2850	 70.64	0	3237385..3238290	-	301	163852307	-	Mext_2889	-	cell wall hydrolase SleB
2851	 67.83	0	3238397..3238654	-	85	163852308	-	Mext_2890	-	hypothetical protein
2852	 67.15	0	3238841..3241507	-	888	163852309	-	Mext_2891	-	pyruvate phosphate dikinase
2853	 58.82	-2	3241725..3241877	-	50	163852310	-	Mext_2892	-	hypothetical protein
2854	 68.29	0	3242113..3242790	-	225	163852311	-	Mext_2893	-	ErfK/YbiS/YcfS/YnhG family protein
2855	 67.57	0	3242977..3243420	+	147	163852312	-	Mext_2894	-	glyoxalase/bleomycin resistance protein/dioxygenase
2856	 66.67	0	3243517..3243777	+	86	163852313	-	Mext_2895	-	hypothetical protein
2857	 65.64	0	3243823..3244407	-	194	163852314	-	Mext_2896	-	cyclic nucleotide-binding
2858	 60.32	-2	3244867..3245055	+	62	163852315	-	Mext_2898	-	hypothetical protein
2859	 66.67	0	3245178..3245651	-	157	163852316	-	Mext_2899	-	regulatory protein MarR
2860	 71.15	0	3245776..3246555	+	259	163852317	-	Mext_2900	-	hypothetical protein
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.