IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2723	 66.24	0	3092383..3093783	+	466	163852180	-	Mext_2761	-	NAD(P)(+) transhydrogenase (AB-specific)
2724	 73.26	+1	3093878..3095713	+	611	163852181	-	Mext_2762	-	single-stranded-DNA-specific exonuclease RecJ
2725	 60.95	-1	3096171..3096905	+	244	163852182	-	Mext_2763	-	cyclic nucleotide-binding
2726	 66.10	0	3096957..3097661	+	234	163852183	-	Mext_2764	-	HWE histidine kinase
2727	 69.39	0	3097871..3099856	+	661	163852184	-	Mext_2765	-	surface antigen (D15)
2728	 72.11	0	3099857..3104248	+	1463	163852185	-	Mext_2766	-	hypothetical protein
2729	 60.99	-1	3104839..3104979	+	46	163852186	-	Mext_2767	-	hypothetical protein
2730	 65.08	0	3105190..3105441	+	83	163852187	-	Mext_2768	-	hypothetical protein
2731	 60.53	-1	3105543..3106031	-	162	163852188	-	Mext_2769	-	cyanate hydratase
2732	 69.42	0	3106320..3108209	+	629	163852189	-	Mext_2770	-	PAS sensor protein
2733	 69.10	0	3108294..3109898	+	534	163852190	-	Mext_2771	-	carbohydrate-selective porin OprB
2734	 67.04	0	3109923..3110981	-	352	163852191	-	Mext_2772	-	cytochrome-c peroxidase
2735	 61.56	-1	3111151..3111522	-	123	163852192	-	Mext_2773	-	hypothetical protein
2736	 68.55	0	3111706..3114570	+	954	163852193	-	Mext_2774	-	diguanylate cyclase
2737	 63.17	-1	3114805..3115662	+	285	163852194	-	Mext_2775	-	catalase
2738	 63.14	-1	3115741..3116250	+	169	163852195	-	Mext_2776	-	hypothetical protein
2739	 69.49	0	3116441..3117112	-	223	163852196	-	Mext_2777	-	hypothetical protein
2740	 65.48	0	3117201..3117452	+	83	163852197	-	Mext_2778	-	hypothetical protein
2741	 71.28	0	3117742..3119691	+	649	163852198	-	Mext_2779	-	chloride channel core
2742	 74.25	+1	3119708..3120208	+	166	163852199	-	Mext_2780	-	hypothetical protein
2743	 69.85	0	3120219..3121067	+	282	163852200	-	Mext_2781	-	2-dehydro-3-deoxyphosphooctonate aldolase
2744	 69.55	0	3121244..3121555	+	103	163852201	-	Mext_2782	-	putative transmembrane protein
2745	 67.53	0	3121887..3122348	-	153	163852202	-	Mext_2783	-	7-cyano-7-deazaguanine reductase
2746	 67.52	0	3122640..3123929	+	429	163852203	-	Mext_2784	-	phosphopyruvate hydratase
2747	 66.67	0	3124063..3124374	+	103	163852204	-	Mext_2785	-	septum formation initiator
2748	 65.52	0	3124550..3125599	+	349	163852205	-	Mext_2786	-	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
2749	 66.24	0	3125745..3127154	+	469	163852206	-	Mext_2787	-	pyruvate dehydrogenase subunit beta
2750	 67.38	0	3127165..3127443	+	92	163852207	-	Mext_2788	-	hypothetical protein
2751	 67.45	0	3127477..3128889	+	470	163852208	-	Mext_2789	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
2752	 65.14	0	3129052..3130491	+	479	163852209	-	Mext_2790	-	dihydrolipoamide dehydrogenase
2753	 59.80	-2	3130702..3130905	+	67	163852210	-	Mext_2791	-	hypothetical protein
2754	 71.15	0	3131002..3131514	-	170	163852211	-	Mext_2792	-	hypothetical protein
2755	 73.21	+1	3131800..3132303	+	167	163852212	-	Mext_2793	-	endo-1,4-beta-glucanase
2756	 67.05	0	3132421..3132681	+	86	163852213	-	Mext_2794	-	hypothetical protein
2757	 69.61	0	3132760..3133404	+	214	163852214	-	Mext_2795	-	ErfK/YbiS/YcfS/YnhG family protein
2758	 68.52	0	3133573..3134919	-	448	163852215	-	Mext_2796	-	L-sorbosone dehydrogenase
2759	 70.37	0	3134941..3135156	-	71	163852216	-	Mext_2797	-	hypothetical protein
2760	 68.56	0	3135367..3136104	+	245	163852217	-	Mext_2798	-	cell wall hydrolase SleB
2761	 67.16	0	3136238..3137257	+	339	163852218	-	Mext_2799	-	lipoyl synthase
2762	 63.62	-1	3137264..3137722	+	152	163852219	-	Mext_2800	-	cyclase/dehydrase
2763	 68.31	0	3137807..3138232	-	141	163852220	-	Mext_2801	-	AsnC/Lrp family regulatory protein
2764	 67.25	0	3138363..3139394	+	343	163852221	-	Mext_2802	-	ornithine cyclodeaminase
2765	 61.77	-1	3139708..3140748	+	346	163852222	-	Mext_2803	-	Beta-ketoacyl-acyl-carrier-protein synthase I
2766	 60.68	-1	3140768..3141001	+	77	163852223	-	Mext_2804	-	hypothetical protein
2767	 64.47	-1	3141002..3142048	+	348	163852224	-	Mext_2805	-	Beta-ketoacyl-acyl-carrier-protein synthase I
2768	 65.22	0	3142045..3142806	+	253	163852225	-	Mext_2806	-	short-chain dehydrogenase/reductase SDR
2769	 60.49	-1	3142735..3143883	-	382	163852226	-	Mext_2807	-	Rieske (2Fe-2S) domain-containing protein
2770	 63.75	-1	3144290..3144940	+	216	163852227	-	Mext_2808	-	hexapeptide transferase family protein
2771	 66.85	0	3145131..3147284	-	717	163852228	-	Mext_2809	-	TPR repeat-containing protein
2772	 71.39	0	3147471..3147809	-	112	163852229	-	Mext_2810	-	hypothetical protein
2773	 70.75	0	3147806..3149593	-	595	163852230	-	Mext_2811	-	ABC transporter related
2774	 67.27	0	3150617..3151114	+	165	163852231	-	Mext_2813	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2775	 71.81	0	3151111..3152160	+	349	163852232	-	Mext_2814	-	molybdopterin dehydrogenase FAD-binding
2776	 70.68	0	3152153..3154396	+	747	163852233	-	Mext_2815	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
2777	 71.40	0	3154545..3155072	-	175	163852234	-	Mext_2816	-	CinA domain-containing protein
2778	 71.76	0	3155069..3156403	-	444	163852235	-	Mext_2817	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2779	 73.18	+1	3156531..3157559	+	342	163852236	-	Mext_2818	-	NifR3 family TIM-barrel protein
2780	 68.61	0	3157559..3158692	+	377	163852237	-	Mext_2819	-	PAS sensor protein
2781	 68.77	0	3158703..3160175	+	490	163852238	-	Mext_2820	-	nitrogen regulation protein NR(I)
2782	 72.22	0	3160303..3161940	+	545	163852239	-	Mext_2821	-	helicase domain-containing protein
2783	 68.12	0	3162004..3164403	+	799	163852240	-	Mext_2822	-	PAS sensor protein
2784	 68.85	0	3164400..3165770	+	456	163852241	-	Mext_2823	-	sigma-54 factor interaction domain-containing protein
2785	 57.65	-2	3166078..3166332	+	84	163852242	-	Mext_2824	-	RNA chaperone Hfq
2786	 69.70	0	3166430..3167845	+	471	163852243	-	Mext_2825	-	GTP-binding proten HflX
2787	 70.17	0	3167992..3169560	-	522	163852244	-	Mext_2826	-	sulphate transporter
2788	 66.67	0	3169570..3170325	-	251	163852245	-	Mext_2827	-	carbonate dehydratase
2789	 69.78	0	3170622..3170942	-	106	163852246	-	Mext_2828	-	hypothetical protein
2790	 61.50	-1	3171775..3172161	-	128	163852247	-	Mext_2829	-	hypothetical protein
2791	 73.81	+1	3172191..3172568	-	125	163852248	-	Mext_2830	-	hypothetical protein
2792	 70.00	0	3172595..3175771	-	1058	163852249	-	Mext_2831	-	acriflavin resistance protein
2793	 72.63	0	3175885..3177612	-	575	163852250	-	Mext_2832	-	RND family efflux transporter MFP subunit
2794	 72.10	0	3177684..3178088	-	134	163852251	-	Mext_2833	-	hypothetical protein
2795	 64.21	-1	3178708..3179196	+	162	163852252	-	Mext_2834	-	ROSMUCR transcriptional regulator
2796	 69.73	0	3179248..3179835	+	195	163852253	-	Mext_2835	-	CheW domain-containing protein
2797	 70.58	0	3179847..3181304	+	485	163852254	-	Mext_2836	-	protein-glutamate O-methyltransferase
2798	 72.94	+1	3181301..3181858	+	185	163852255	-	Mext_2837	-	CheW domain-containing protein
2799	 69.24	0	3181939..3183687	+	582	163852256	-	Mext_2838	-	chemotaxis sensory transducer
2800	 72.50	0	3183712..3185958	+	748	163852257	-	Mext_2839	-	response regulator receiver
2801	 70.72	0	3185955..3187040	+	361	163852258	-	Mext_2840	-	protein-glutamate methylesterase
2802	 69.26	0	3187037..3188770	+	577	163852259	-	Mext_2841	-	ATPase domain-containing protein
2803	 70.79	0	3188767..3190635	+	622	163852260	-	Mext_2842	-	PAS sensor protein
2804	 64.07	-1	3190733..3190963	+	76	163852261	-	Mext_2843	-	metallothionein family protein
2805	 73.70	+1	3190991..3192313	-	440	163852262	-	Mext_2844	-	WD-40 repeat-containing protein
2806	 74.59	+1	3192532..3193617	+	361	163852263	-	Mext_2845	-	molybdopterin binding domain-containing protein
2807	 72.99	+1	3193614..3195590	+	658	163852264	-	Mext_2846	-	molybdenum cofactor synthesis domain-containing protein
2808	 70.95	0	3195587..3196123	+	178	163852265	-	Mext_2847	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2809	 73.78	+1	3196127..3197377	+	416	163852266	-	Mext_2848	-	molybdenum cofactor synthesis domain-containing protein
2810	 71.58	0	3197435..3198472	-	345	163852267	-	Mext_2849	-	regulatory protein LysR
2811	 69.37	0	3198553..3199293	+	246	163852268	-	Mext_2850	-	binding-protein-dependent transport systems inner membrane component
2812	 73.36	+1	3199290..3200006	+	238	163852269	-	Mext_2851	-	ABC transporter related
2813	 68.36	0	3199979..3200806	+	275	163852270	-	Mext_2852	-	extracellular solute-binding protein
2814	 71.31	0	3200975..3201211	-	78	163852271	-	Mext_2853	-	hypothetical protein
2815	 69.92	0	3201255..3201899	-	214	163852272	-	Mext_2854	-	PRC-barrel domain-containing protein
2816	 71.20	0	3201968..3203644	-	558	163852273	-	Mext_2855	-	glucan biosynthesis protein G
2817	 72.05	0	3203679..3205610	+	643	163852274	-	Mext_2856	-	glucosyltransferase MdoH
2818	 68.16	0	3205700..3206167	-	155	163852275	-	Mext_2857	-	hypothetical protein
2819	 72.58	0	3206257..3207474	-	405	163852276	-	Mext_2858	-	cystathionine gamma-synthase
2820	 69.57	0	3207572..3208087	+	171	163852277	-	Mext_2859	-	TspO/MBR family protein
2821	 66.67	0	3208248..3208613	-	121	163852278	-	Mext_2860	-	response regulator receiver
2822	 66.49	0	3208777..3209346	-	189	163852279	-	Mext_2861	-	hypoxanthine phosphoribosyltransferase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.