IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2652	 73.11	+1	3006886..3009384	+	832	163852109	-	Mext_2690	-	heavy metal translocating P-type ATPase
2653	 72.04	0	3009381..3009845	+	154	163852110	-	Mext_2691	-	Cu(I)-responsive transcriptional regulator
2654	 69.41	0	3009933..3011099	+	388	163852111	-	Mext_2692	-	amidohydrolase
2655	 71.40	0	3011048..3011554	-	168	163852112	-	Mext_2693	-	hypothetical protein
2656	 62.70	-1	3011551..3012534	-	327	163852113	-	Mext_2694	-	acyltransferase 3
2657	 70.27	0	3013160..3014185	-	341	163852114	-	Mext_2695	-	tRNA pseudouridine synthase B
2658	 66.21	0	3014394..3014831	-	145	163852115	-	Mext_2696	-	ribosome-binding factor A
2659	 69.46	0	3014934..3017903	-	989	163852116	-	Mext_2697	-	translation initiation factor IF-2
2660	 68.28	0	3017968..3018711	-	247	163852117	-	Mext_2698	-	hypothetical protein
2661	 68.13	0	3018753..3020390	-	545	163852118	-	Mext_2699	-	transcription termination factor NusA
2662	 68.25	0	3020504..3021259	-	251	163852119	-	Mext_2700	-	hypothetical protein
2663	 68.20	0	3021525..3022178	+	217	163852120	-	Mext_2701	-	streptogramin A acetyltransferase
2664	 64.64	0	3022506..3023540	-	344	163852121	-	Mext_2702	-	aspartate-semialdehyde dehydrogenase
2665	 72.24	0	3023757..3024743	+	328	163852122	-	Mext_2703	-	hypothetical protein
2666	 67.63	0	3024857..3025270	+	137	163852123	-	Mext_2704	-	hypothetical protein
2667	 61.20	-1	3025334..3025882	-	182	163852124	-	Mext_2705	-	GCN5-related N-acetyltransferase
2668	 70.41	0	3025966..3026259	-	97	163852125	-	Mext_2706	-	hypothetical protein
2669	 67.16	0	3026275..3027492	-	405	163852126	-	Mext_2707	-	cobalamin synthesis protein P47K
2670	 69.43	0	3027658..3028344	+	228	163852127	-	Mext_2708	-	regulatory protein TetR
2671	 65.83	0	3028511..3028990	+	159	163852128	-	Mext_2709	-	hypothetical protein
2672	 65.45	0	3029244..3031049	+	601	163852129	-	Mext_2710	-	malto-oligosyltrehalose trehalohydrolase
2673	 68.75	0	3031046..3035986	+	1646	163852130	-	Mext_2711	-	malto-oligosyltrehalose synthase
2674	 66.46	0	3036125..3039499	+	1124	163852131	-	Mext_2712	-	alpha amylase catalytic region
2675	 67.16	0	3039671..3042937	+	1088	163852132	-	Mext_2713	-	trehalose synthase
2676	 66.67	0	3043000..3045354	+	784	163852133	-	Mext_2714	-	1,4-alpha-glucan branching enzyme
2677	 68.79	0	3045376..3045705	-	109	163852134	-	Mext_2715	-	hypothetical protein
2678	 66.44	0	3045734..3046180	+	148	163852135	-	Mext_2716	-	hypothetical protein
2679	 68.37	0	3046177..3047292	+	371	163852136	-	Mext_2717	-	radical SAM domain-containing protein
2680	 67.97	0	3047324..3048088	-	254	163852137	-	Mext_2718	-	HhH-GPD family protein
2681	 67.70	0	3048138..3048911	-	257	163852138	-	Mext_2719	-	transcription activator effector binding
2682	 69.70	0	3049108..3049998	+	296	163852139	-	Mext_2720	-	diaminopimelate epimerase
2683	 71.53	0	3049995..3051227	+	410	163852140	-	Mext_2721	-	MiaB-like tRNA modifying enzyme
2684	 68.47	0	3051268..3051987	-	239	163852141	-	Mext_2722	-	pseudouridine synthase
2685	 70.28	0	3052061..3053527	+	488	163852142	-	Mext_2723	-	signal recognition particle-docking protein FtsY
2686	 65.22	0	3053670..3054290	+	206	163852143	-	Mext_2724	-	intracellular septation protein A
2687	 71.21	0	3054404..3055306	-	300	163852144	-	Mext_2725	-	hydroxyneurosporene synthase
2688	 73.20	+1	3055300..3056799	-	499	163852145	-	Mext_2726	-	phytoene desaturase
2689	 73.93	+1	3056905..3057771	+	288	163852146	-	Mext_2727	-	polyprenyl synthetase
2690	 72.77	0	3057793..3058938	+	381	163852147	-	Mext_2728	-	O-methyltransferase family protein
2691	 71.78	0	3059040..3059978	+	312	163852148	-	Mext_2729	-	chlorophyll synthesis pathway, BchC
2692	 66.47	0	3059975..3060979	+	334	163852149	-	Mext_2730	-	chlorophyllide reductase iron protein subunit X
2693	 71.71	0	3060983..3062509	+	508	163852150	-	Mext_2731	-	chlorophyllide reductase subunit Y
2694	 69.80	0	3062509..3063975	+	488	163852151	-	Mext_2732	-	chlorophyllide reductase subunit Z
2695	 68.61	0	3063972..3064280	+	102	163852152	-	Mext_2733	-	hypothetical protein
2696	 62.77	-1	3064451..3064681	+	76	163852153	-	Mext_2734	-	antenna complex alpha/beta subunit
2697	 64.02	-1	3064693..3064881	+	62	163852154	-	Mext_2735	-	antenna complex alpha/beta subunit
2698	 63.39	-1	3064956..3065780	+	274	163852155	-	Mext_2736	-	photosynthetic reaction center subunit L
2699	 66.77	0	3065903..3066880	+	325	163852156	-	Mext_2737	-	photosynthetic reaction center subunit M
2700	 65.23	0	3066877..3067986	+	369	163852157	-	Mext_2738	-	photosynthetic reaction center cytochrome c subunit
2701	 70.21	0	3068384..3070132	+	582	163852158	-	Mext_2739	-	type I secretion system ATPase
2702	 69.27	0	3070132..3071478	+	448	163852159	-	Mext_2740	-	HlyD family type I secretion membrane fusion protein
2703	 61.90	-1	3071631..3071756	+	41	163852160	-	Mext_2741	-	ribosomal protein L36
2704	 69.46	0	3071834..3072442	+	202	163852161	-	Mext_2742	-	TPR repeat-containing protein
2705	 71.59	0	3072453..3073448	+	331	163852162	-	Mext_2743	-	alpha/beta hydrolase fold
2706	 68.80	0	3073500..3074951	-	483	163852163	-	Mext_2744	-	pyruvate kinase
2707	 67.02	0	3075304..3076161	+	285	163852164	-	Mext_2745	-	porin
2708	 66.30	0	3076477..3077019	-	180	163852165	-	Mext_2746	-	hypothetical protein
2709	 71.31	0	3076985..3078298	-	437	163852166	-	Mext_2747	-	hydroxypyruvate reductase
2710	 69.25	0	3078526..3079299	+	257	163852167	-	Mext_2748	-	N-formylglutamate amidohydrolase
2711	 65.24	0	3079328..3079678	+	116	163852168	-	Mext_2749	-	hypothetical protein
2712	 63.67	-1	3079783..3080049	+	88	163852169	-	Mext_2750	-	hypothetical protein
2713	 71.97	0	3080271..3081761	-	496	163852170	-	Mext_2751	-	hypothetical protein
2714	 71.05	0	3081987..3083927	-	646	163852171	-	Mext_2752	-	peptidoglycan binding domain-containing protein
2715	 67.00	0	3084174..3085664	-	496	163852172	-	Mext_2753	-	sigma-54 factor interaction domain-containing protein
2716	 67.15	0	3085993..3087870	+	625	163852173	-	Mext_2754	-	pepF/M3 family oligoendopeptidase
2717	 60.09	-2	3087949..3088374	+	141	163852174	-	Mext_2755	-	hypothetical protein
2718	 63.29	-1	3088371..3088784	+	137	163852175	-	Mext_2756	-	death-on-curing family protein
2719	 66.74	0	3088877..3090247	+	456	163852176	-	Mext_2757	-	hypothetical protein
2720	 65.99	0	3090360..3090653	+	97	163852177	-	Mext_2758	-	hypothetical protein
2721	 67.28	0	3090765..3091904	+	379	163852178	-	Mext_2759	-	NAD(P)(+) transhydrogenase (AB-specific)
2722	 68.21	0	3091926..3092378	+	150	163852179	-	Mext_2760	-	PntAB, NAD(P) transhydrogenase, alpha2 subunit
2723	 66.24	0	3092383..3093783	+	466	163852180	-	Mext_2761	-	NAD(P)(+) transhydrogenase (AB-specific)
2724	 73.26	+1	3093878..3095713	+	611	163852181	-	Mext_2762	-	single-stranded-DNA-specific exonuclease RecJ
2725	 60.95	-1	3096171..3096905	+	244	163852182	-	Mext_2763	-	cyclic nucleotide-binding
2726	 66.10	0	3096957..3097661	+	234	163852183	-	Mext_2764	-	HWE histidine kinase
2727	 69.39	0	3097871..3099856	+	661	163852184	-	Mext_2765	-	surface antigen (D15)
2728	 72.11	0	3099857..3104248	+	1463	163852185	-	Mext_2766	-	hypothetical protein
2729	 60.99	-1	3104839..3104979	+	46	163852186	-	Mext_2767	-	hypothetical protein
2730	 65.08	0	3105190..3105441	+	83	163852187	-	Mext_2768	-	hypothetical protein
2731	 60.53	-1	3105543..3106031	-	162	163852188	-	Mext_2769	-	cyanate hydratase
2732	 69.42	0	3106320..3108209	+	629	163852189	-	Mext_2770	-	PAS sensor protein
2733	 69.10	0	3108294..3109898	+	534	163852190	-	Mext_2771	-	carbohydrate-selective porin OprB
2734	 67.04	0	3109923..3110981	-	352	163852191	-	Mext_2772	-	cytochrome-c peroxidase
2735	 61.56	-1	3111151..3111522	-	123	163852192	-	Mext_2773	-	hypothetical protein
2736	 68.55	0	3111706..3114570	+	954	163852193	-	Mext_2774	-	diguanylate cyclase
2737	 63.17	-1	3114805..3115662	+	285	163852194	-	Mext_2775	-	catalase
2738	 63.14	-1	3115741..3116250	+	169	163852195	-	Mext_2776	-	hypothetical protein
2739	 69.49	0	3116441..3117112	-	223	163852196	-	Mext_2777	-	hypothetical protein
2740	 65.48	0	3117201..3117452	+	83	163852197	-	Mext_2778	-	hypothetical protein
2741	 71.28	0	3117742..3119691	+	649	163852198	-	Mext_2779	-	chloride channel core
2742	 74.25	+1	3119708..3120208	+	166	163852199	-	Mext_2780	-	hypothetical protein
2743	 69.85	0	3120219..3121067	+	282	163852200	-	Mext_2781	-	2-dehydro-3-deoxyphosphooctonate aldolase
2744	 69.55	0	3121244..3121555	+	103	163852201	-	Mext_2782	-	putative transmembrane protein
2745	 67.53	0	3121887..3122348	-	153	163852202	-	Mext_2783	-	7-cyano-7-deazaguanine reductase
2746	 67.52	0	3122640..3123929	+	429	163852203	-	Mext_2784	-	phosphopyruvate hydratase
2747	 66.67	0	3124063..3124374	+	103	163852204	-	Mext_2785	-	septum formation initiator
2748	 65.52	0	3124550..3125599	+	349	163852205	-	Mext_2786	-	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
2749	 66.24	0	3125745..3127154	+	469	163852206	-	Mext_2787	-	pyruvate dehydrogenase subunit beta
2750	 67.38	0	3127165..3127443	+	92	163852207	-	Mext_2788	-	hypothetical protein
2751	 67.45	0	3127477..3128889	+	470	163852208	-	Mext_2789	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.