IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2447	 71.35	0	2783037..2783783	+	248	163851904	-	Mext_2481	-	pilus biogenesis lipoprotein CpaD
2448	 68.84	0	2783869..2785113	+	414	163851905	-	Mext_2482	-	putative pilus assembly protein CpaE
2449	 67.91	0	2785161..2786609	+	482	163851906	-	Mext_2483	-	type II secretion system protein E
2450	 66.98	0	2786606..2787577	+	323	163851907	-	Mext_2484	-	type II secretion system protein
2451	 67.28	0	2787626..2788597	+	323	163851908	-	Mext_2485	-	type II secretion system protein
2452	 70.35	0	2788638..2789696	+	352	163851909	-	Mext_2486	-	dehydratase
2453	 68.96	0	2789693..2790955	+	420	163851910	-	Mext_2487	-	major facilitator transporter
2454	 70.19	0	2791097..2791522	+	141	163851911	-	Mext_2488	-	OsmC family protein
2455	 69.42	0	2792494..2793075	-	193	163851912	-	Mext_2489	-	CoA-binding domain-containing protein
2456	 70.89	0	2793084..2793533	+	149	163851913	-	Mext_2490	-	thioesterase superfamily protein
2457	 69.47	0	2793589..2794908	-	439	163851914	-	Mext_2491	-	major facilitator transporter
2458	 67.16	0	2795380..2796804	+	474	163851915	-	Mext_2492	-	diguanylate cyclase
2459	 74.05	+1	2796877..2797296	-	139	163851916	-	Mext_2493	-	BA14K family protein
2460	 72.04	0	2797444..2798355	-	303	163851917	-	Mext_2494	-	hypothetical protein
2461	 69.97	0	2798403..2798735	-	110	163851918	-	Mext_2495	-	CsbD family protein
2462	 70.49	0	2799053..2799418	+	121	163851919	-	Mext_2496	-	hypothetical protein
2463	 69.21	0	2799528..2800157	+	209	163851920	-	Mext_2497	-	3'-5' exonuclease
2464	 68.77	0	2800428..2801186	+	252	163851921	-	Mext_2498	-	hypothetical protein
2465	 69.55	0	2801183..2801911	+	242	163851922	-	Mext_2499	-	OstA family protein
2466	 68.97	0	2801929..2802798	+	289	163851923	-	Mext_2500	-	ABC transporter related
2467	 68.03	0	2803372..2804907	+	511	163851924	-	Mext_2501	-	RNA polymerase sigma-54 factor, RpoN
2468	 68.97	0	2805021..2805629	+	202	163851925	-	Mext_2502	-	ribosomal subunit interface protein
2469	 69.23	0	2805827..2806294	+	155	163851926	-	Mext_2503	-	PTS IIA-like nitrogen-regulatory protein PtsN
2470	 71.52	0	2806296..2806625	+	109	163851927	-	Mext_2504	-	hypothetical protein
2471	 71.50	0	2806761..2807774	+	337	163851928	-	Mext_2505	-	magnesium chelatase ATPase subunit I
2472	 67.61	0	2807797..2808435	-	212	163851929	-	Mext_2506	-	phosphoglyceromutase
2473	 72.64	0	2808572..2809375	-	267	163851930	-	Mext_2507	-	dihydrodipicolinate reductase
2474	 70.69	0	2809450..2810145	-	231	163851931	-	Mext_2508	-	multiple antibiotic resistance (MarC)-related protein
2475	 71.70	0	2810183..2810917	-	244	163851932	-	Mext_2509	-	methyltransferase type 11
2476	 70.64	0	2811149..2811928	+	259	163851933	-	Mext_2510	-	hydroxyacylglutathione hydrolase
2477	 66.67	0	2812189..2812341	+	50	163851934	-	Mext_2511	-	hypothetical protein
2478	 69.30	0	2812338..2813324	+	328	163851935	-	Mext_2512	-	tyrosine recombinase XerD
2479	 70.11	0	2813495..2814712	+	405	163851936	-	Mext_2513	-	diguanylate cyclase
2480	 72.45	0	2814846..2817077	+	743	163851937	-	Mext_2514	-	glycoside hydrolase family 3 protein
2481	 67.00	0	2817084..2818286	-	400	163851938	-	Mext_2515	-	binding-protein-dependent transport systems inner membrane component
2482	 70.29	0	2818324..2818848	-	174	163851939	-	Mext_2516	-	hypothetical protein
2483	 69.45	0	2818845..2820029	-	394	163851940	-	Mext_2517	-	hypothetical protein
2484	 70.84	0	2820798..2822186	+	462	163851941	-	Mext_2519	-	RND family efflux transporter MFP subunit
2485	 67.50	0	2822199..2825336	+	1045	163851942	-	Mext_2520	-	acriflavin resistance protein
2486	 67.99	0	2825333..2828647	+	1104	163851943	-	Mext_2521	-	acriflavin resistance protein
2487	 70.54	0	2828718..2830316	+	532	163851944	-	Mext_2522	-	RND efflux system outer membrane lipoprotein
2488	 67.00	0	2830431..2831939	+	502	163851945	-	Mext_2523	-	glucose-6-phosphate 1-dehydrogenase
2489	 70.09	0	2832207..2833316	-	369	163851946	-	Mext_2524	-	3-isopropylmalate dehydrogenase
2490	 70.44	0	2833424..2833741	-	105	163851947	-	Mext_2525	-	hypothetical protein
2491	 74.05	+1	2833907..2835517	+	536	163851948	-	Mext_2526	-	hypothetical protein
2492	 71.23	0	2835677..2837365	+	562	163851949	-	Mext_2527	-	thiamine pyrophosphate binding domain-containing protein
2493	 70.61	0	2837362..2837817	+	151	163851950	-	Mext_2528	-	putative thiol-disulphide oxidoreductase DCC
2494	 71.75	0	2837989..2838951	-	320	163851951	-	Mext_2529	-	polyprenyl synthetase
2495	 69.85	0	2838988..2839773	+	261	163851952	-	Mext_2530	-	monofunctional biosynthetic peptidoglycan transglycosylase
2496	 66.81	0	2839778..2841181	-	467	163851953	-	Mext_2531	-	deoxyribodipyrimidine photo-lyase
2497	 69.28	0	2841811..2842920	-	369	163851954	-	Mext_2532	-	TRAP dicarboxylate transporter- DctP subunit
2498	 70.83	0	2843055..2843630	+	191	163851955	-	Mext_2533	-	protein tyrosine phosphatase
2499	 68.89	0	2843654..2844778	-	374	163851956	-	Mext_2534	-	extracellular ligand-binding receptor
2500	 70.02	0	2845097..2846350	-	417	163851957	-	Mext_2535	-	polysaccharide export protein
2501	 70.95	0	2846467..2847936	-	489	163851958	-	Mext_2536	-	sulfatase
2502	 73.49	+1	2847943..2849892	-	649	163851959	-	Mext_2537	-	capsule polysaccharide biosynthesis protein
2503	 68.50	0	2850255..2851562	+	435	163851960	-	Mext_2538	-	capsule polysaccharide biosynthesis protein
2504	 71.98	0	2851559..2852386	+	275	163851961	-	Mext_2539	-	short-chain dehydrogenase/reductase SDR
2505	 72.14	0	2852386..2853243	+	285	163851962	-	Mext_2540	-	formyl transferase domain-containing protein
2506	 66.82	0	2853247..2854527	-	426	163851963	-	Mext_2541	-	O-acetylhomoserine aminocarboxypropyltransferase
2507	 67.76	0	2854933..2855481	+	182	163851964	-	Mext_2542	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
2508	 64.81	0	2855516..2856808	+	430	163851965	-	Mext_2543	-	cytochrome b/b6 domain-containing protein
2509	 67.34	0	2856830..2857723	+	297	163851966	-	Mext_2544	-	cytochrome c1
2510	 69.52	0	2857935..2858810	+	291	163851967	-	Mext_2545	-	5'-methylthioadenosine phosphorylase
2511	 70.45	0	2858915..2859178	-	87	163851968	-	Mext_2546	-	hypothetical protein
2512	 68.95	0	2859213..2860133	-	306	163851969	-	Mext_2547	-	metallophosphoesterase
2513	 65.31	0	2860329..2860916	+	195	163851970	-	Mext_2548	-	imidazoleglycerol-phosphate dehydratase
2514	 72.62	0	2860939..2861442	+	167	163851971	-	Mext_2549	-	hypothetical protein
2515	 69.08	0	2861439..2862101	+	220	163851972	-	Mext_2550	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
2516	 71.61	0	2862143..2862910	+	255	163851973	-	Mext_2551	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2517	 70.53	0	2862958..2863734	+	258	163851974	-	Mext_2552	-	imidazoleglycerol phosphate synthase, cyclase subunit
2518	 69.48	0	2863753..2864178	+	141	163851975	-	Mext_2553	-	phosphoribosyl-ATP diphosphatase
2519	 66.37	0	2864175..2865188	+	337	163851976	-	Mext_2554	-	pantothenate kinase
2520	 66.84	0	2865356..2867041	-	561	163851977	-	Mext_2555	-	chemotaxis sensory transducer
2521	 68.24	0	2867608..2868753	+	381	163851978	-	Mext_2556	-	hypothetical protein
2522	 68.55	0	2868882..2869466	+	194	163851979	-	Mext_2557	-	response regulator receiver
2523	 65.03	0	2870240..2870911	+	223	163851980	-	Mext_2558	-	ErfK/YbiS/YcfS/YnhG family protein
2524	 71.25	0	2871032..2871358	-	108	163851981	-	Mext_2559	-	hypothetical protein
2525	 66.25	0	2871566..2872042	-	158	163851982	-	Mext_2560	-	phasin
2526	 70.96	0	2872284..2874824	+	846	163851983	-	Mext_2561	-	PAS sensor protein
2527	 65.03	0	2875084..2877033	+	649	163851984	-	Mext_2562	-	acetyl-CoA synthetase
2528	 64.60	0	2877245..2877631	+	128	163851985	-	Mext_2563	-	hypothetical protein
2529	 67.14	0	2877628..2879313	+	561	163851986	-	Mext_2564	-	SSS family solute/sodium (Na+) symporter
2530	 64.94	0	2879572..2881308	+	578	163851987	-	Mext_2565	-	major facilitator transporter
2531	 69.73	0	2881522..2883120	-	532	163851988	-	Mext_2566	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2532	 72.27	0	2883327..2885039	-	570	163851989	-	Mext_2567	-	heparinase II/III family protein
2533	 72.08	0	2885227..2886075	-	282	163851990	-	Mext_2568	-	rhodanese domain-containing protein
2534	 74.26	+1	2886347..2886583	+	78	163851991	-	Mext_2569	-	hypothetical protein
2535	 62.43	-1	2886694..2887779	-	361	163851992	-	Mext_2570	-	hemolysin-type calcium-binding region
2536	 71.89	0	2888454..2889986	+	510	163851993	-	Mext_2571	-	DEAD/DEAH box helicase domain-containing protein
2537	 63.98	-1	2890161..2890346	+	61	163851994	-	Mext_2572	-	hypothetical protein
2538	 70.21	0	2890436..2890774	+	112	163851995	-	Mext_2573	-	hypothetical protein
2539	 67.38	0	2891213..2891632	+	139	163851996	-	Mext_2575	-	thioesterase superfamily protein
2540	 69.46	0	2891797..2892441	+	214	163851997	-	Mext_2576	-	beta-lactamase domain-containing protein
2541	 66.79	0	2892680..2895127	+	815	163851998	-	Mext_2577	-	DNA gyrase, B subunit
2542	 64.94	0	2895191..2896000	-	269	163851999	-	Mext_2578	-	sigma-70 family RNA polymerase sigma factor
2543	 60.33	-1	2896317..2896742	+	141	163852000	-	Mext_2579	-	large conductance mechanosensitive channel protein
2544	 65.64	0	2896749..2897039	-	96	163852001	-	Mext_2580	-	hypothetical protein
2545	 65.94	0	2897331..2897744	-	137	163852002	-	Mext_2581	-	hypothetical protein
2546	 68.44	0	2897927..2899108	-	393	163852003	-	Mext_2582	-	aminotransferase class I and II
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.