IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.64   STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2382	 65.39	0	2721311..2721937	+	208	163851839	-	Mext_2416	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2383	 65.33	0	2722189..2723460	+	423	163851840	-	Mext_2417	-	ATP-dependent protease ATP-binding subunit
2384	 65.80	0	2723728..2726148	+	806	163851841	-	Mext_2418	-	ATP-dependent protease La
2385	 66.29	0	2726450..2726716	+	88	163851842	-	Mext_2419	-	hypothetical protein
2386	 63.83	-1	2727044..2727325	+	93	163851843	-	Mext_2420	-	hypothetical protein
2387	 46.90	-2	2727861..2728118	+	85	163851844	-	Mext_2421	-	hypothetical protein
2388	 63.50	-1	2728211..2729062	+	283	163851845	-	Mext_2422	-	hypothetical protein
2389	 62.89	-1	2729223..2730836	+	537	163851846	-	Mext_2423	-	glycosyltransferase
2390	 61.32	-1	2731005..2731247	+	80	163851847	-	Mext_2424	-	hypothetical protein
2391	 61.35	-1	2731394..2731675	-	93	163851848	-	Mext_2425	-	hypothetical protein
2392	 59.52	-2	2732015..2733526	-	503	163851849	-	Mext_2426	-	hemolysin-type calcium-binding region
2393	 64.53	0	2733710..2734738	-	342	163851850	-	Mext_2427	-	terminase large subunit
2394	 71.23	0	2734728..2735012	-	94	163851851	-	Mext_2428	-	hypothetical protein
2395	 65.73	0	2735121..2735441	-	106	163851852	-	Mext_2429	-	hypothetical protein
2396	 67.78	0	2735496..2735765	-	89	163851853	-	Mext_2430	-	hypothetical protein
2397	 74.29	+1	2735765..2735974	-	69	163851854	-	Mext_2431	-	hypothetical protein
2398	 65.37	0	2735998..2736843	-	281	163851855	-	Mext_2432	-	resolvase domain-containing protein
2399	 69.51	0	2737000..2737386	-	128	163851856	-	Mext_2433	-	hypothetical protein
2400	 69.56	0	2737424..2738287	-	287	163851857	-	Mext_2434	-	hypothetical protein
2401	 57.50	-2	2738713..2738952	+	79	163851858	-	Mext_2435	-	hypothetical protein
2402	 58.39	-2	2739250..2740155	+	301	163851859	-	Mext_2436	-	CMP/dCMP deaminase zinc-binding
2403	 68.46	0	2740331..2740720	-	129	163851860	-	Mext_2437	-	hypothetical protein
2404	 57.41	-2	2741033..2741464	-	143	163851861	-	Mext_2438	-	ROSMUCR transcriptional regulator
2405	 69.28	0	2741517..2741975	-	152	163851862	-	Mext_2439	-	hypothetical protein
2406	 72.29	0	2741972..2742718	-	248	163851863	-	Mext_2440	-	hypothetical protein
2407	 68.59	0	2743411..2744034	-	207	163851864	-	Mext_2441	-	hypothetical protein
2408	 70.73	0	2744031..2744498	-	155	163851865	-	Mext_2442	-	hypothetical protein
2409	 64.77	0	2744502..2745029	-	175	163851866	-	Mext_2443	-	hypothetical protein
2410	 73.83	+1	2745101..2745421	-	106	163851867	-	Mext_2444	-	hypothetical protein
2411	 69.83	0	2745424..2745771	-	115	163851868	-	Mext_2445	-	hypothetical protein
2412	 69.51	0	2745794..2746285	-	163	163851869	-	Mext_2446	-	hypothetical protein
2413	 67.05	0	2747345..2747602	+	85	163851870	-	Mext_2447	-	hypothetical protein
2414	 68.79	0	2747580..2748287	-	235	163851871	-	Mext_2448	-	hypothetical protein
2415	 67.79	0	2748383..2748649	+	88	163851872	-	Mext_2449	-	hypothetical protein
2416	 68.18	0	2748809..2749534	-	241	163851873	-	Mext_2450	-	hypothetical protein
2417	 66.79	0	2749594..2750400	-	268	163851874	-	Mext_2451	-	resolvase domain-containing protein
2418	 64.34	-1	2750750..2751136	-	128	163851875	-	Mext_2452	-	helix-turn-helix HxlR type
2419	 67.87	0	2751242..2751988	+	248	163851876	-	Mext_2453	-	NADP oxidoreductase coenzyme F420-dependent
2420	 63.04	-1	2752024..2753016	+	330	163851877	-	Mext_2454	-	alcohol dehydrogenase
2421	 63.41	-1	2753200..2753475	-	91	163851878	-	Mext_2455	-	hypothetical protein
2422	 65.87	0	2753510..2754013	-	167	163851879	-	Mext_2456	-	hypothetical protein
2423	 65.98	0	2754127..2756589	-	820	163851880	-	Mext_2457	-	hypothetical protein
2424	 69.60	0	2756673..2756945	-	90	163851881	-	Mext_2458	-	hypothetical protein
2425	 64.60	0	2757208..2757498	+	96	163851882	-	Mext_2459	-	hypothetical protein
2426	 67.63	0	2757640..2758887	-	415	163851883	-	Mext_2460	-	integrase family protein
2427	 69.91	0	2760064..2761236	+	390	163851884	-	Mext_2461	-	glycosyl transferase group 1
2428	 69.73	0	2761248..2762195	-	315	163851885	-	Mext_2462	-	hypothetical protein
2429	 71.36	0	2762195..2763217	-	340	163851886	-	Mext_2463	-	methyltransferase small
2430	 67.46	0	2763220..2763975	-	251	163851887	-	Mext_2464	-	hypothetical protein
2431	 65.66	0	2764252..2764848	-	198	163851888	-	Mext_2465	-	hypothetical protein
2432	 71.79	0	2764976..2767042	+	688	163851889	-	Mext_2466	-	OPT family oligopeptide transporter
2433	 55.47	-2	2767111..2767905	+	264	163851890	-	Mext_2467	-	ABC-2 type transporter
2434	 68.23	0	2768495..2769196	-	233	163851891	-	Mext_2468	-	hypothetical protein
2435	 67.25	0	2769432..2770625	+	397	163851892	-	Mext_2469	-	ribonuclease BN
2436	 70.74	0	2770973..2771365	-	130	163851893	-	Mext_2470	-	hypothetical protein
2437	 67.56	0	2771870..2775013	+	1047	163851894	-	Mext_2471	-	DNA polymerase I
2438	 70.59	0	2775197..2775859	-	220	163851895	-	Mext_2472	-	deoxyribonuclease V
2439	 67.58	0	2775873..2776970	-	365	163851896	-	Mext_2473	-	translation-associated GTPase
2440	 69.19	0	2777050..2777682	-	210	163851897	-	Mext_2474	-	aminoacyl-tRNA hydrolase
2441	 70.31	0	2777784..2778470	-	228	163851898	-	Mext_2475	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
2442	 67.91	0	2778751..2779233	-	160	163851899	-	Mext_2476	-	hypothetical protein
2443	 58.59	-2	2779598..2779795	+	65	163851900	-	Mext_2477	-	Flp/Fap pilin component
2444	 61.18	-1	2780003..2780512	+	169	163851901	-	Mext_2478	-	peptidase A24A prepilin type IV
2445	 68.96	0	2780706..2781491	+	261	163851902	-	Mext_2479	-	Flp pilus assembly protein CpaB
2446	 66.40	0	2781503..2783011	+	502	163851903	-	Mext_2480	-	type II and III secretion system protein
2447	 71.35	0	2783037..2783783	+	248	163851904	-	Mext_2481	-	pilus biogenesis lipoprotein CpaD
2448	 68.84	0	2783869..2785113	+	414	163851905	-	Mext_2482	-	putative pilus assembly protein CpaE
2449	 67.91	0	2785161..2786609	+	482	163851906	-	Mext_2483	-	type II secretion system protein E
2450	 66.98	0	2786606..2787577	+	323	163851907	-	Mext_2484	-	type II secretion system protein
2451	 67.28	0	2787626..2788597	+	323	163851908	-	Mext_2485	-	type II secretion system protein
2452	 70.35	0	2788638..2789696	+	352	163851909	-	Mext_2486	-	dehydratase
2453	 68.96	0	2789693..2790955	+	420	163851910	-	Mext_2487	-	major facilitator transporter
2454	 70.19	0	2791097..2791522	+	141	163851911	-	Mext_2488	-	OsmC family protein
2455	 69.42	0	2792494..2793075	-	193	163851912	-	Mext_2489	-	CoA-binding domain-containing protein
2456	 70.89	0	2793084..2793533	+	149	163851913	-	Mext_2490	-	thioesterase superfamily protein
2457	 69.47	0	2793589..2794908	-	439	163851914	-	Mext_2491	-	major facilitator transporter
2458	 67.16	0	2795380..2796804	+	474	163851915	-	Mext_2492	-	diguanylate cyclase
2459	 74.05	+1	2796877..2797296	-	139	163851916	-	Mext_2493	-	BA14K family protein
2460	 72.04	0	2797444..2798355	-	303	163851917	-	Mext_2494	-	hypothetical protein
2461	 69.97	0	2798403..2798735	-	110	163851918	-	Mext_2495	-	CsbD family protein
2462	 70.49	0	2799053..2799418	+	121	163851919	-	Mext_2496	-	hypothetical protein
2463	 69.21	0	2799528..2800157	+	209	163851920	-	Mext_2497	-	3'-5' exonuclease
2464	 68.77	0	2800428..2801186	+	252	163851921	-	Mext_2498	-	hypothetical protein
2465	 69.55	0	2801183..2801911	+	242	163851922	-	Mext_2499	-	OstA family protein
2466	 68.97	0	2801929..2802798	+	289	163851923	-	Mext_2500	-	ABC transporter related
2467	 68.03	0	2803372..2804907	+	511	163851924	-	Mext_2501	-	RNA polymerase sigma-54 factor, RpoN
2468	 68.97	0	2805021..2805629	+	202	163851925	-	Mext_2502	-	ribosomal subunit interface protein
2469	 69.23	0	2805827..2806294	+	155	163851926	-	Mext_2503	-	PTS IIA-like nitrogen-regulatory protein PtsN
2470	 71.52	0	2806296..2806625	+	109	163851927	-	Mext_2504	-	hypothetical protein
2471	 71.50	0	2806761..2807774	+	337	163851928	-	Mext_2505	-	magnesium chelatase ATPase subunit I
2472	 67.61	0	2807797..2808435	-	212	163851929	-	Mext_2506	-	phosphoglyceromutase
2473	 72.64	0	2808572..2809375	-	267	163851930	-	Mext_2507	-	dihydrodipicolinate reductase
2474	 70.69	0	2809450..2810145	-	231	163851931	-	Mext_2508	-	multiple antibiotic resistance (MarC)-related protein
2475	 71.70	0	2810183..2810917	-	244	163851932	-	Mext_2509	-	methyltransferase type 11
2476	 70.64	0	2811149..2811928	+	259	163851933	-	Mext_2510	-	hydroxyacylglutathione hydrolase
2477	 66.67	0	2812189..2812341	+	50	163851934	-	Mext_2511	-	hypothetical protein
2478	 69.30	0	2812338..2813324	+	328	163851935	-	Mext_2512	-	tyrosine recombinase XerD
2479	 70.11	0	2813495..2814712	+	405	163851936	-	Mext_2513	-	diguanylate cyclase
2480	 72.45	0	2814846..2817077	+	743	163851937	-	Mext_2514	-	glycoside hydrolase family 3 protein
2481	 67.00	0	2817084..2818286	-	400	163851938	-	Mext_2515	-	binding-protein-dependent transport systems inner membrane component
68.64	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.