IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2121	 53.95	-2	2411956..2412183	+	75	163851578	-	Mext_2155	-	hypothetical protein
2122	 71.95	0	2412732..2416211	+	1159	163851579	-	Mext_2156	-	hypothetical protein
2123	 64.25	-1	2416600..2416971	+	123	163851580	-	Mext_2157	-	30S ribosomal protein S12
2124	 66.88	0	2417078..2417548	+	156	163851581	-	Mext_2158	-	30S ribosomal protein S7
2125	 64.31	-1	2417612..2419687	+	691	163851582	-	Mext_2159	-	elongation factor G
2126	 66.33	0	2419741..2420931	+	396	163851583	-	Mext_2160	-	elongation factor Tu
2127	 62.46	-1	2421011..2421319	+	102	163851584	-	Mext_2161	-	ribosomal protein S10
2128	 66.40	0	2421370..2422110	+	246	163851585	-	Mext_2162	-	50S ribosomal protein L3
2129	 66.99	0	2422110..2422730	+	206	163851586	-	Mext_2163	-	ribosomal protein L4/L1e
2130	 62.29	-1	2422727..2423023	+	98	163851587	-	Mext_2164	-	ribosomal protein L25/L23
2131	 66.91	0	2423049..2423885	+	278	163851588	-	Mext_2165	-	50S ribosomal protein L2
2132	 63.44	-1	2423891..2424169	+	92	163851589	-	Mext_2166	-	ribosomal protein S19
2133	 66.93	0	2424171..2424554	+	127	163851590	-	Mext_2167	-	ribosomal protein L22
2134	 67.74	0	2424566..2425312	+	248	163851591	-	Mext_2168	-	ribosomal protein S3
2135	 67.39	0	2425346..2425759	+	137	163851592	-	Mext_2169	-	50S ribosomal protein L16
2136	 64.35	-1	2425772..2425987	+	71	163851593	-	Mext_2170	-	ribosomal protein L29
2137	 62.17	-1	2425999..2426265	+	88	163851594	-	Mext_2171	-	ribosomal protein S17
2138	 64.72	0	2426921..2428309	+	462	163851595	-	Mext_2172	-	ATPase central domain-containing protein
2139	 67.76	0	2428523..2428981	-	152	163851596	-	Mext_2173	-	NUDIX hydrolase
2140	 63.23	-1	2429227..2429691	-	154	163851597	-	Mext_2174	-	regulatory protein MarR
2141	 64.75	0	2429981..2430397	-	138	163851598	-	Mext_2175	-	ribosomal protein L17
2142	 66.21	0	2430627..2431724	-	365	163851599	-	Mext_2176	-	DNA-directed RNA polymerase subunit alpha
2143	 70.07	0	2431745..2432626	-	293	163851600	-	Mext_2177	-	beta-lactamase domain-containing protein
2144	 70.00	0	2432664..2433053	-	129	163851601	-	Mext_2178	-	ribosomal protein S11
2145	 66.40	0	2433223..2433591	-	122	163851602	-	Mext_2179	-	ribosomal protein S13
2146	 67.66	0	2433895..2434497	-	200	163851603	-	Mext_2180	-	adenylate kinase
2147	 65.92	0	2434668..2436011	-	447	163851604	-	Mext_2181	-	preprotein translocase, SecY subunit
2148	 67.65	0	2436126..2436635	-	169	163851605	-	Mext_2182	-	ribosomal protein L15
2149	 67.69	0	2436649..2436843	-	64	163851606	-	Mext_2183	-	ribosomal protein L30
2150	 71.16	0	2436855..2437433	-	192	163851607	-	Mext_2184	-	ribosomal protein S5
2151	 68.04	0	2437524..2437886	-	120	163851608	-	Mext_2185	-	ribosomal protein L18
2152	 64.79	0	2437898..2438431	-	177	163851609	-	Mext_2186	-	ribosomal protein L6
2153	 65.91	0	2438448..2438843	-	131	163851610	-	Mext_2187	-	ribosomal protein S8
2154	 64.38	-1	2438856..2439161	-	101	163851611	-	Mext_2188	-	ribosomal protein S14
2155	 64.37	-1	2439203..2439769	-	188	163851612	-	Mext_2189	-	ribosomal protein L5
2156	 64.13	-1	2439762..2440076	-	104	163851613	-	Mext_2190	-	ribosomal protein L24
2157	 62.87	-1	2440076..2440444	-	122	163851614	-	Mext_2191	-	50S ribosomal protein L14
2158	 69.50	0	2440798..2441079	-	93	163851615	-	Mext_2192	-	hypothetical protein
2159	 70.22	0	2441388..2441921	-	177	163851616	-	Mext_2193	-	nuclease
2160	 72.44	0	2442524..2442904	+	126	163851617	-	Mext_2194	-	hypothetical protein
2161	 69.87	0	2443018..2444265	+	415	163851618	-	Mext_2195	-	diguanylate cyclase
2162	 72.48	0	2444326..2445426	+	366	163851619	-	Mext_2196	-	hypothetical protein
2163	 71.93	0	2445491..2446003	-	170	163851620	-	Mext_2197	-	hypothetical protein
2164	 65.89	0	2446162..2446290	-	42	163851621	-	Mext_2198	-	hypothetical protein
2165	 59.60	-2	2446339..2446635	-	98	163851622	-	Mext_2199	-	hypothetical protein
2166	 69.38	0	2446919..2447176	+	85	163851623	-	Mext_2200	-	hypothetical protein
2167	 65.93	0	2447180..2447449	+	89	163851624	-	Mext_2201	-	hypothetical protein
2168	 73.33	+1	2447446..2447715	+	89	163851625	-	Mext_2202	-	hypothetical protein
2169	 74.24	+1	2448038..2449225	-	395	163851626	-	Mext_2203	-	monooxygenase FAD-binding
2170	 65.54	0	2449241..2449507	-	88	163851627	-	Mext_2204	-	hypothetical protein
2171	 63.58	-1	2449640..2450092	+	150	163851628	-	Mext_2205	-	GCN5-related N-acetyltransferase
2172	 67.37	0	2450287..2451141	+	284	163851629	-	Mext_2206	-	methionine aminopeptidase, type I
2173	 72.02	0	2451156..2451902	+	248	163851630	-	Mext_2207	-	DNA repair protein RadC
2174	 66.18	0	2452218..2453657	+	479	163851631	-	Mext_2208	-	hypothetical protein
2175	 66.14	0	2453765..2454709	+	314	163851632	-	Mext_2209	-	hypothetical protein
2176	 68.24	0	2454792..2455046	-	84	163851633	-	Mext_2210	-	hypothetical protein
2177	 69.78	0	2455087..2455536	-	149	163851634	-	Mext_2211	-	hypothetical protein
2178	 68.28	0	2455551..2455859	+	102	163851635	-	Mext_2212	-	hypothetical protein
2179	 70.69	0	2456075..2456497	-	140	163851636	-	Mext_2213	-	hypothetical protein
2180	 68.76	0	2457013..2457873	+	286	163851637	-	Mext_2214	-	transglutaminase domain-containing protein
2181	 66.67	0	2458027..2458773	+	248	163851638	-	Mext_2215	-	putative proteasome-type protease
2182	 70.62	0	2458888..2459595	-	235	163851639	-	Mext_2216	-	silent information regulator protein Sir2
2183	 67.94	0	2459604..2460701	-	365	163851640	-	Mext_2217	-	CBS domain-containing protein
2184	 71.04	0	2461258..2464365	+	1035	163851641	-	Mext_2218	-	glycosyl transferase family protein
2185	 66.67	0	2464457..2464687	+	76	163851642	-	Mext_2219	-	hypothetical protein
2186	 70.63	0	2464810..2465061	-	83	163851643	-	Mext_2220	-	hypothetical protein
2187	 69.05	0	2465343..2466809	-	488	163851644	-	Mext_2221	-	protease Do
2188	 71.58	0	2467141..2467893	-	250	163851645	-	Mext_2222	-	hypothetical protein
2189	 65.55	0	2468058..2468414	-	118	163851646	-	Mext_2223	-	phasin
2190	 72.87	+1	2468643..2469947	-	434	163851647	-	Mext_2224	-	glycosyl transferase group 1
2191	 71.62	0	2470162..2471433	+	423	163851648	-	Mext_2225	-	glycosyl transferase group 1
2192	 61.11	-1	2471521..2471700	+	59	163851649	-	Mext_2226	-	hypothetical protein
2193	 70.61	0	2471735..2474146	-	803	163851650	-	Mext_2227	-	diguanylate cyclase
2194	 69.45	0	2474293..2475981	-	562	163851651	-	Mext_2228	-	acyl-CoA dehydrogenase domain-containing protein
2195	 73.16	+1	2476144..2477067	-	307	163851652	-	Mext_2229	-	hypothetical protein
2196	 69.51	0	2477142..2478089	+	315	163851653	-	Mext_2230	-	ribonuclease BN
2197	 71.18	0	2478001..2479041	-	346	163851654	-	Mext_2231	-	hypothetical protein
2198	 68.65	0	2479286..2480695	-	469	163851655	-	Mext_2232	-	sulfate adenylyltransferase, large subunit
2199	 67.42	0	2480695..2481624	-	309	163851656	-	Mext_2233	-	sulfate adenylyltransferase subunit 2
2200	 71.48	0	2481624..2482433	-	269	163851657	-	Mext_2234	-	adenylylsulfate reductase, thioredoxin dependent
2201	 65.87	0	2482698..2483201	+	167	163851658	-	Mext_2235	-	AsnC/Lrp family regulatory protein
2202	 69.74	0	2483302..2485089	+	595	163851659	-	Mext_2236	-	flavodoxin/nitric oxide synthase
2203	 69.20	0	2485148..2487121	+	657	163851660	-	Mext_2237	-	sulfite reductase subunit beta
2204	 65.73	0	2487185..2487613	-	142	163851661	-	Mext_2238	-	putative hydroxamate-type ferrisiderophore receptor
2205	 67.92	0	2487617..2489365	-	582	163851662	-	Mext_2239	-	TonB-dependent receptor plug
2206	 70.98	0	2489698..2490555	-	285	163851663	-	Mext_2240	-	pantoate--beta-alanine ligase
2207	 73.33	+1	2490631..2490990	-	119	163851664	-	Mext_2241	-	hypothetical protein
2208	 65.84	0	2491063..2491668	-	201	163851665	-	Mext_2242	-	helix-turn-helix domain-containing protein
2209	 68.95	0	2492045..2492614	-	189	163851666	-	Mext_2243	-	single-strand binding protein
2210	 69.52	0	2492849..2493865	-	338	163851667	-	Mext_2244	-	alcohol dehydrogenase
2211	 73.04	+1	2493958..2494365	+	135	163851668	-	Mext_2245	-	hypothetical protein
2212	 73.54	+1	2494416..2494982	-	188	163851669	-	Mext_2246	-	hypothetical protein
2213	 70.91	0	2495209..2495985	+	258	163851670	-	Mext_2247	-	hypothetical protein
2214	 71.49	0	2496144..2497262	-	372	163851671	-	Mext_2248	-	NADH:flavin oxidoreductase/NADH oxidase
2215	 66.77	0	2497432..2498421	+	329	163851672	-	Mext_2249	-	glutathione S-transferase domain-containing protein
2216	 68.22	0	2498493..2499008	+	171	163851673	-	Mext_2250	-	hypothetical protein
2217	 70.41	0	2499245..2500153	+	302	163851674	-	Mext_2251	-	thioredoxin domain-containing protein
2218	 67.86	0	2500239..2500907	+	222	163851675	-	Mext_2252	-	peptidase S16 lon domain-containing protein
2219	 68.12	0	2500965..2501171	+	68	163851676	-	Mext_2253	-	hypothetical protein
2220	 71.67	0	2501326..2502285	-	319	163851677	-	Mext_2254	-	import inner membrane translocase subunit Tim44
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.