IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.64   STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
167	 65.24	0	183431..183991	+	186	163849624	-	Mext_0170	-	ROSMUCR transcriptional regulator
168	 66.81	0	183988..184692	-	234	163849625	-	Mext_0171	-	dienelactone hydrolase
169	 64.07	-1	185264..185494	+	76	163849626	-	Mext_0172	-	hypothetical protein
170	 44.79	-2	185773..187317	-	514	163849627	-	Mext_0173	-	hypothetical protein
171	 44.66	-2	187499..188125	-	208	163849628	-	Mext_0174	-	putative transmembrane protein
172	 65.99	0	188402..189724	-	440	163849629	-	Mext_0175	-	integrase family protein
173	 66.90	0	190109..191401	-	430	163849630	-	Mext_0176	-	tryptophan synthase subunit beta
174	 70.99	0	191473..192120	-	215	163849631	-	Mext_0177	-	phosphoribosylanthranilate isomerase
175	 68.83	0	192137..192505	-	122	163849632	-	Mext_0178	-	hypothetical protein
176	 67.96	0	192731..193039	-	102	163849633	-	Mext_0179	-	integration host factor, beta subunit
177	 68.74	0	193081..194046	-	321	163849634	-	Mext_0180	-	signal peptide peptidase SppA, 36K type
178	 69.46	0	194307..195632	-	441	163849635	-	Mext_0181	-	hypothetical protein
179	 64.51	0	195725..197437	-	570	163849636	-	Mext_0182	-	30S ribosomal protein S1
180	 71.87	0	197852..198658	-	268	163849637	-	Mext_0183	-	RNA methyltransferase
181	 65.01	0	199300..200085	-	261	163849638	-	Mext_0184	-	hypothetical protein
182	 67.52	0	200217..201155	+	312	163849639	-	Mext_0185	-	pirin domain-containing protein
183	 68.99	0	201258..203024	+	588	163849640	-	Mext_0186	-	potassium efflux system protein
184	 71.67	0	203204..203923	+	239	163849641	-	Mext_0187	-	cytochrome c biogenesis protein transmembrane region
185	 69.59	0	204031..204645	+	204	163849642	-	Mext_0188	-	HhH-GPD family protein
186	 67.44	0	204651..204908	-	85	163849643	-	Mext_0189	-	hypothetical protein
187	 66.67	0	205236..205454	+	72	163849644	-	Mext_0190	-	hypothetical protein
188	 69.55	0	205569..207266	-	565	163849645	-	Mext_0191	-	chemotaxis sensory transducer
189	 66.36	0	207649..209271	+	540	163849646	-	Mext_0192	-	ABC transporter related
190	 71.99	0	209279..209635	-	118	163849647	-	Mext_0193	-	hypothetical protein
191	 68.75	0	209645..209884	-	79	163849648	-	Mext_0194	-	hypothetical protein
192	 70.39	0	210102..210746	-	214	163849649	-	Mext_0195	-	hypothetical protein
193	 69.97	0	210757..211392	-	211	163849650	-	Mext_0196	-	hypothetical protein
194	 71.31	0	211493..212482	+	329	163849651	-	Mext_0197	-	hypothetical protein
195	 75.61	+1	212502..213686	-	394	163849652	-	Mext_0198	-	glycosyl transferase group 1
196	 69.16	0	213686..214726	-	346	163849653	-	Mext_0199	-	glycosyl transferase group 1
197	 70.75	0	214784..216838	+	684	163849654	-	Mext_0200	-	HAD family hydrolase
198	 74.97	+1	216860..217750	+	296	163849655	-	Mext_0201	-	putative sugar transferase
199	 71.28	0	217798..218946	+	382	163849656	-	Mext_0202	-	hypothetical protein
200	 67.73	0	218997..219938	+	313	163849657	-	Mext_0203	-	glycosyl transferase family protein
201	 72.35	0	219935..220990	+	351	163849658	-	Mext_0204	-	glycosyl transferase group 1
202	 66.07	0	221035..221703	+	222	163849659	-	Mext_0205	-	hypothetical protein
203	 64.50	0	222390..223499	+	369	163849660	-	Mext_0206	-	metal-dependent phosphohydrolase
204	 71.26	0	223664..226360	+	898	163849661	-	Mext_0207	-	ABC transporter related
205	 72.10	0	226402..227358	-	318	163849662	-	Mext_0208	-	ThiJ/PfpI domain-containing protein
206	 70.85	0	227486..228274	+	262	163849663	-	Mext_0209	-	short-chain dehydrogenase/reductase SDR
207	 65.55	0	228467..228913	+	148	163849664	-	Mext_0210	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
208	 71.89	0	228924..231182	+	752	163849665	-	Mext_0211	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
209	 73.71	+1	231193..232200	+	335	163849666	-	Mext_0212	-	C4-dicarboxylate transporter/malic acid transport protein
210	 69.70	0	232432..233682	+	416	163849667	-	Mext_0213	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
211	 72.03	0	233698..235095	+	465	163849668	-	Mext_0214	-	FAD linked oxidase domain-containing protein
212	 64.85	0	235867..236526	+	219	163849669	-	Mext_0215	-	chaperone protein HtpG
213	 70.79	0	236514..239324	+	936	163849670	-	Mext_0216	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
214	 66.45	0	239321..240691	+	456	163849671	-	Mext_0217	-	polysulphide reductase NrfD
215	 67.63	0	240688..241206	+	172	163849672	-	Mext_0218	-	hypothetical protein
216	 72.73	0	241203..241730	+	175	163849673	-	Mext_0219	-	hypothetical protein
217	 70.85	0	241727..242683	+	318	163849674	-	Mext_0220	-	hypothetical protein
218	 71.26	0	242676..243197	+	173	163849675	-	Mext_0221	-	hypothetical protein
219	 67.22	0	243197..244285	+	362	163849676	-	Mext_0222	-	cytochrome c oxidase, subunit II
220	 64.30	-1	244317..246008	+	563	163849677	-	Mext_0223	-	cytochrome c oxidase, subunit I
221	 66.96	0	246005..246694	+	229	163849678	-	Mext_0224	-	cytochrome c oxidase subunit III
222	 67.99	0	246691..246993	+	100	163849679	-	Mext_0225	-	caa(3)-type oxidase, subunit IV
223	 62.11	-1	247134..247484	-	116	163849680	-	Mext_0226	-	hypothetical protein
224	 67.02	0	247508..247792	-	94	163849681	-	Mext_0227	-	hypothetical protein
225	 69.92	0	248069..248590	+	173	163849682	-	Mext_0228	-	sigma-70 family RNA polymerase sigma factor
226	 70.96	0	248593..249360	+	255	163849683	-	Mext_0229	-	hypothetical protein
227	 69.27	0	249407..250480	+	357	163849684	-	Mext_0230	-	catalase domain-containing protein
228	 67.20	0	250477..251043	+	188	163849685	-	Mext_0231	-	cytochrome B561
229	 67.72	0	251640..253355	+	571	163849686	-	Mext_0233	-	potassium-transporting ATPase subunit A
230	 69.25	0	253602..255692	+	696	163849687	-	Mext_0234	-	K+-transporting ATPase, B subunit
231	 71.29	0	255716..256321	+	201	163849688	-	Mext_0235	-	potassium-transporting ATPase, C subunit
232	 71.85	0	256332..259049	+	905	163849689	-	Mext_0236	-	osmosensitive K channel His kinase sensor
233	 69.34	0	259046..259792	+	248	163849690	-	Mext_0237	-	response regulator receiver
234	 69.05	0	260040..260291	-	83	163849691	-	Mext_0238	-	hypothetical protein
235	 70.78	0	260483..261844	+	453	163849692	-	Mext_0239	-	TRAP-type uncharacterized transport system periplasmic component-like protein
236	 66.45	0	262145..263083	-	312	163849693	-	Mext_0240	-	hypothetical protein
237	 65.65	0	263080..263868	-	262	163849694	-	Mext_0241	-	methyltransferase type 11
238	 72.65	0	263865..264650	-	261	163849695	-	Mext_0242	-	phosphoglycerate mutase
239	 66.94	0	264647..265744	-	365	163849696	-	Mext_0243	-	myo-inositol-1-phosphate synthase
240	 70.03	0	265744..266784	-	346	163849697	-	Mext_0244	-	NAD-dependent epimerase/dehydratase
241	 70.12	0	266811..267911	-	366	163849698	-	Mext_0245	-	hypothetical protein
242	 70.64	0	267908..269014	-	368	163849699	-	Mext_0246	-	hypothetical protein
243	 68.97	0	269011..270138	-	375	163849700	-	Mext_0247	-	hypothetical protein
244	 73.26	+1	270135..271241	-	368	163849701	-	Mext_0248	-	glycosyl transferase group 1
245	 68.83	0	271232..272527	-	431	163849702	-	Mext_0249	-	radical SAM domain-containing protein
246	 70.88	0	272524..273615	-	363	163849703	-	Mext_0250	-	NAD-dependent epimerase/dehydratase
247	 69.54	0	273612..274724	-	370	163849704	-	Mext_0251	-	NAD-dependent epimerase/dehydratase
248	 68.20	0	277465..278703	+	412	163849705	-	Mext_0253	-	integrase family protein
249	 59.04	-2	278713..279735	+	340	163849706	-	Mext_0254	-	hypothetical protein
250	 64.10	-1	279856..280089	+	77	163849707	-	Mext_0255	-	prophage CP4-57 regulatory
251	 67.48	0	280092..281069	+	325	163849708	-	Mext_0256	-	hypothetical protein
252	 66.84	0	281179..282921	+	580	163849709	-	Mext_0257	-	superfamily II helicase
253	 63.19	-1	283044..283619	+	191	163849710	-	Mext_0258	-	hypothetical protein
254	 63.07	-1	283764..284069	+	101	163849711	-	Mext_0259	-	hypothetical protein
255	 67.25	0	284472..284981	-	169	163849712	-	Mext_0260	-	hypothetical protein
256	 72.44	0	285505..286128	+	207	163849713	-	Mext_0261	-	hypothetical protein
257	 70.05	0	286133..286546	+	137	163849714	-	Mext_0262	-	hypothetical protein
258	 59.26	-2	286773..287015	+	80	163849715	-	Mext_0263	-	hypothetical protein
259	 52.75	-2	287514..289130	-	538	163849716	-	Mext_0264	-	hypothetical protein
260	 68.99	0	289506..290237	-	243	163849717	-	Mext_0265	-	short-chain dehydrogenase/reductase SDR
261	 64.63	0	290320..290712	+	130	163849718	-	Mext_0266	-	helix-turn-helix HxlR type
262	 58.13	-2	290846..291325	-	159	163849719	-	Mext_0267	-	hypothetical protein
263	 65.93	0	291402..291947	-	181	163849720	-	Mext_0268	-	resolvase domain-containing protein
264	 45.06	-2	292075..292944	-	289	163849721	-	Mext_0269	-	Sel1 domain-containing protein
265	 62.09	-1	294155..294985	+	276	163849722	-	Mext_0270	-	hypothetical protein
266	 58.86	-2	294982..295788	-	268	163849723	-	Mext_0271	-	putative restriction endonuclease
68.64	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.