IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2036	 69.00	0	2306417..2306716	-	99	163851493	-	Mext_2069	-	hypothetical protein
2037	 66.83	0	2307247..2308449	-	400	163851494	-	Mext_2070	-	aminotransferase class I and II
2038	 65.56	0	2308890..2310872	+	660	163851495	-	Mext_2071	-	coenzyme A transferase
2039	 69.30	0	2311246..2312916	+	556	163851496	-	Mext_2072	-	chemotaxis sensory transducer
2040	 69.01	0	2313303..2314370	+	355	163851497	-	Mext_2073	-	30S ribosomal protein S2
2041	 66.88	0	2314515..2315435	+	306	163851498	-	Mext_2074	-	translation elongation factor Ts
2042	 69.43	0	2315602..2316324	+	240	163851499	-	Mext_2075	-	uridylate kinase
2043	 63.15	-1	2316434..2316973	-	179	163851500	-	Mext_2076	-	inorganic pyrophosphatase
2044	 71.99	0	2317248..2317754	-	168	163851501	-	Mext_2077	-	GCN5-related N-acetyltransferase
2045	 69.56	0	2317892..2318617	+	241	163851502	-	Mext_2078	-	hypothetical protein
2046	 70.78	0	2318626..2319621	+	331	163851503	-	Mext_2079	-	hypothetical protein
2047	 72.92	+1	2319682..2320737	-	351	163851504	-	Mext_2080	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
2048	 66.59	0	2320910..2323504	-	864	163851505	-	Mext_2081	-	outer membrane protein assembly complex, YaeT protein
2049	 69.85	0	2323835..2324995	-	386	163851506	-	Mext_2082	-	membrane-associated zinc metalloprotease
2050	 73.03	+1	2325212..2326390	-	392	163851507	-	Mext_2083	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2051	 73.75	+1	2326405..2327265	-	286	163851508	-	Mext_2084	-	phosphatidate cytidylyltransferase
2052	 71.15	0	2327265..2328044	-	259	163851509	-	Mext_2085	-	undecaprenyl diphosphate synthase
2053	 64.89	0	2328115..2328678	-	187	163851510	-	Mext_2086	-	ribosome recycling factor
2054	 69.04	0	2329011..2330150	+	379	163851511	-	Mext_2087	-	HPP family protein?
2055	 74.00	+1	2330487..2331767	-	426	163851512	-	Mext_2088	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
2056	 70.37	0	2332160..2333104	+	314	163851513	-	Mext_2089	-	LysR substrate-binding
2057	 68.93	0	2333350..2334099	+	249	163851514	-	Mext_2090	-	short-chain dehydrogenase/reductase SDR
2058	 69.11	0	2334117..2334977	+	286	163851515	-	Mext_2091	-	transketolase domain-containing protein
2059	 70.00	0	2334974..2335993	+	339	163851516	-	Mext_2092	-	transketolase central region
2060	 69.03	0	2336156..2337172	+	338	163851517	-	Mext_2093	-	TRAP dicarboxylate transporter, DctP subunit
2061	 69.63	0	2337184..2339070	+	628	163851518	-	Mext_2094	-	TRAP C4-dicarboxylate transport system permease DctM subunit
2062	 66.78	0	2339752..2340663	+	303	163851519	-	Mext_2095	-	hypothetical protein
2063	 70.37	0	2349677..2350540	+	287	163851520	-	Mext_2097	-	acyl-CoA thioesterase II
2064	 64.60	0	2350803..2351141	+	112	163851521	-	Mext_2098	-	nitrogen regulatory protein P-II
2065	 67.27	0	2351274..2352770	+	498	163851522	-	Mext_2099	-	ammonium transporter
2066	 64.61	0	2353112..2354374	+	420	163851523	-	Mext_2100	-	hypothetical protein
2067	 70.64	0	2354556..2357171	+	871	163851524	-	Mext_2101	-	cell divisionFtsK/SpoIIIE
2068	 70.05	0	2357322..2359481	+	719	163851525	-	Mext_2102	-	TonB-dependent receptor plug
2069	 68.09	0	2359837..2361804	+	655	163851526	-	Mext_2103	-	PAS sensor protein
2070	 72.61	0	2361927..2362229	-	100	163851527	-	Mext_2104	-	hypothetical protein
2071	 69.51	0	2362247..2364565	-	772	163851528	-	Mext_2105	-	oxidoreductase alpha (molybdopterin) subunit
2072	 73.26	+1	2365089..2366165	-	358	163851529	-	Mext_2106	-	dihydroorotate dehydrogenase 2
2073	 71.79	0	2366162..2366512	-	116	163851530	-	Mext_2107	-	hypothetical protein
2074	 69.19	0	2366736..2367368	+	210	163851531	-	Mext_2108	-	peptidase S24/S26 domain-containing protein
2075	 69.39	0	2367380..2367709	-	109	163851532	-	Mext_2109	-	hypothetical protein
2076	 59.72	-2	2367880..2368095	-	71	163851533	-	Mext_2110	-	hypothetical protein
2077	 70.96	0	2368231..2369091	-	286	163851534	-	Mext_2111	-	serine O-acetyltransferase
2078	 69.89	0	2369372..2370271	-	299	163851535	-	Mext_2112	-	anaerobic benzoate catabolism transcriptional regulator
2079	 73.00	+1	2370935..2373208	-	757	163851536	-	Mext_2113	-	ATPase domain-containing protein
2080	 75.49	+1	2373330..2373533	-	67	163851537	-	Mext_2114	-	hypothetical protein
2081	 73.78	+1	2373545..2373811	-	88	163851538	-	Mext_2115	-	hypothetical protein
2082	 70.20	0	2373985..2374719	-	244	163851539	-	Mext_2116	-	response regulator receiver
2083	 69.51	0	2375020..2376915	+	631	163851540	-	Mext_2117	-	histidine kinase
2084	 60.68	-1	2377002..2377385	-	127	163851541	-	Mext_2118	-	glyoxalase/bleomycin resistance protein/dioxygenase
2085	 67.77	0	2377539..2377811	-	90	163851542	-	Mext_2119	-	CobW family cobalimin synthesis protein
2086	 65.85	0	2377909..2378640	-	243	163851543	-	Mext_2120	-	cyclic nucleotide-binding
2087	 73.43	+1	2378824..2380035	-	403	163851544	-	Mext_2121	-	PepSY-associated TM helix domain-containing protein
2088	 68.41	0	2380090..2382270	-	726	163851545	-	Mext_2122	-	TonB-dependent siderophore receptor
2089	 71.26	0	2382615..2383115	+	166	163851546	-	Mext_2123	-	hypothetical protein
2090	 68.48	0	2383342..2383947	+	201	163851547	-	Mext_2124	-	oxidoreductase molybdopterin binding
2091	 71.58	0	2383961..2384692	+	243	163851548	-	Mext_2125	-	oxidoreductase FAD-binding subunit
2092	 64.55	0	2384873..2385250	-	125	163851549	-	Mext_2126	-	hypothetical protein
2093	 64.10	-1	2385428..2385739	+	103	163851550	-	Mext_2127	-	hypothetical protein
2094	 72.02	0	2386021..2387439	+	472	163851551	-	Mext_2128	-	3-phosphoshikimate 1-carboxyvinyltransferase
2095	 74.74	+1	2387436..2388104	+	222	163851552	-	Mext_2129	-	cytidylate kinase
2096	 72.33	0	2388124..2388441	-	105	163851553	-	Mext_2130	-	hypothetical protein
2097	 67.36	0	2389244..2390542	+	432	163851554	-	Mext_2131	-	hypothetical protein
2098	 72.60	0	2390579..2391841	+	420	163851555	-	Mext_2132	-	glycosyl transferase family protein
2099	 70.91	0	2391848..2392624	-	258	163851556	-	Mext_2133	-	creatininase
2100	 69.85	0	2392773..2393714	+	313	163851557	-	Mext_2134	-	diguanylate cyclase
2101	 74.34	+1	2393698..2394114	-	138	163851558	-	Mext_2135	-	hypothetical protein
2102	 65.20	0	2394243..2394446	-	67	163851559	-	Mext_2136	-	CsbD family protein
2103	 67.20	0	2394751..2396061	+	436	163851560	-	Mext_2137	-	major facilitator transporter
2104	 68.22	0	2396067..2396837	+	256	163851561	-	Mext_2138	-	fumarylacetoacetate (FAA) hydrolase
2105	 67.96	0	2396943..2397950	+	335	163851562	-	Mext_2139	-	2-dehydropantoate 2-reductase
2106	 69.83	0	2397953..2399533	+	526	163851563	-	Mext_2140	-	AMP-dependent synthetase and ligase
2107	 68.09	0	2400100..2400381	-	93	163851564	-	Mext_2141	-	hypothetical protein
2108	 67.45	0	2400382..2400636	-	84	163851565	-	Mext_2142	-	hypothetical protein
2109	 76.78	+1	2400752..2401117	-	121	163851566	-	Mext_2143	-	hypothetical protein
2110	 73.82	+1	2401248..2402450	-	400	163851567	-	Mext_2144	-	major facilitator transporter
2111	 71.87	0	2402568..2403470	+	300	163851568	-	Mext_2145	-	LysR substrate-binding
2112	 65.38	0	2403454..2403843	-	129	163851569	-	Mext_2146	-	4-oxalocrotonate tautomerase
2113	 68.35	0	2404101..2404991	+	296	163851570	-	Mext_2147	-	citrate (pro-3S)-lyase
2114	 67.63	0	2405061..2405477	-	138	163851571	-	Mext_2148	-	hypothetical protein
2115	 68.74	0	2405676..2406350	-	224	163851572	-	Mext_2149	-	HAD family hydrolase
2116	 71.01	0	2406395..2407915	+	506	163851573	-	Mext_2150	-	hypothetical protein
2117	 71.70	0	2407928..2408563	+	211	163851574	-	Mext_2151	-	hypothetical protein
2118	 72.08	0	2408662..2409603	-	313	163851575	-	Mext_2152	-	LysR substrate-binding
2119	 72.04	0	2409738..2410667	+	309	163851576	-	Mext_2153	-	glyoxalase/bleomycin resistance protein/dioxygenase
2120	 72.86	+1	2410744..2411373	+	209	163851577	-	Mext_2154	-	phospholipase/carboxylesterase
2121	 53.95	-2	2411956..2412183	+	75	163851578	-	Mext_2155	-	hypothetical protein
2122	 71.95	0	2412732..2416211	+	1159	163851579	-	Mext_2156	-	hypothetical protein
2123	 64.25	-1	2416600..2416971	+	123	163851580	-	Mext_2157	-	30S ribosomal protein S12
2124	 66.88	0	2417078..2417548	+	156	163851581	-	Mext_2158	-	30S ribosomal protein S7
2125	 64.31	-1	2417612..2419687	+	691	163851582	-	Mext_2159	-	elongation factor G
2126	 66.33	0	2419741..2420931	+	396	163851583	-	Mext_2160	-	elongation factor Tu
2127	 62.46	-1	2421011..2421319	+	102	163851584	-	Mext_2161	-	ribosomal protein S10
2128	 66.40	0	2421370..2422110	+	246	163851585	-	Mext_2162	-	50S ribosomal protein L3
2129	 66.99	0	2422110..2422730	+	206	163851586	-	Mext_2163	-	ribosomal protein L4/L1e
2130	 62.29	-1	2422727..2423023	+	98	163851587	-	Mext_2164	-	ribosomal protein L25/L23
2131	 66.91	0	2423049..2423885	+	278	163851588	-	Mext_2165	-	50S ribosomal protein L2
2132	 63.44	-1	2423891..2424169	+	92	163851589	-	Mext_2166	-	ribosomal protein S19
2133	 66.93	0	2424171..2424554	+	127	163851590	-	Mext_2167	-	ribosomal protein L22
2134	 67.74	0	2424566..2425312	+	248	163851591	-	Mext_2168	-	ribosomal protein S3
2135	 67.39	0	2425346..2425759	+	137	163851592	-	Mext_2169	-	50S ribosomal protein L16
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.