IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.64   STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
93	 63.90	-1	98364..99014	-	216	163849550	-	Mext_0094	-	putative cytochrome c oxidase subunit III protein
94	 63.28	-1	99011..100927	-	638	163849551	-	Mext_0095	-	cytochrome c oxidase, subunit I
95	 64.88	0	100924..101928	-	334	163849552	-	Mext_0096	-	cytochrome c oxidase, subunit II
96	 65.78	0	101936..102499	-	187	163849553	-	Mext_0097	-	cytochrome c class I
97	 66.07	0	102496..103332	-	278	163849554	-	Mext_0098	-	extracellular solute-binding protein
98	 64.74	0	103313..105130	-	605	163849555	-	Mext_0099	-	methanol/ethanol family PQQ-dependent dehydrogenase
99	 59.88	-2	105565..105888	+	107	163849556	-	Mext_0100	-	hypothetical protein
100	 66.44	0	105966..107288	-	440	163849557	-	Mext_0101	-	integrase family protein
101	 63.86	-1	107628..108626	-	332	163849558	-	Mext_0102	-	alpha/beta hydrolase fold
102	 59.01	-2	108935..109156	+	73	163849559	-	Mext_0103	-	hypothetical protein
103	 57.99	-2	109706..110512	+	268	163849560	-	Mext_0104	-	GDSL family lipase
104	 61.08	-1	110845..111471	+	208	163849561	-	Mext_0105	-	SNARE associated Golgi protein
105	 62.49	-1	111509..113017	-	502	163849562	-	Mext_0106	-	phospholipase D/transphosphatidylase
106	 62.04	-1	113414..113629	+	71	163849563	-	Mext_0107	-	hypothetical protein
107	 62.80	-1	113859..115721	+	620	163849564	-	Mext_0108	-	PAS sensor protein
108	 58.68	-2	115718..116080	+	120	163849565	-	Mext_0109	-	response regulator receiver
109	 57.91	-2	116695..117162	-	155	163849566	-	Mext_0110	-	hypothetical protein
110	 67.40	0	118719..119402	-	227	163849567	-	Mext_0111	-	nuclease
111	 65.33	0	119435..119584	-	49	163849568	-	Mext_0112	-	hypothetical protein
112	 65.63	0	121179..121661	-	160	163849569	-	Mext_0113	-	PAS sensor protein
113	 61.59	-1	121875..122327	+	150	163849570	-	Mext_0114	-	BLUF domain-containing protein
114	 64.94	0	122428..122658	+	76	163849571	-	Mext_0115	-	hypothetical protein
115	 56.20	-2	122986..123396	-	136	163849572	-	Mext_0116	-	cupin 2 domain-containing protein
116	 62.96	-1	123900..124142	-	80	163849573	-	Mext_0117	-	hypothetical protein
117	 63.00	-1	124232..124558	-	108	163849574	-	Mext_0118	-	hypothetical protein
118	 63.02	-1	125064..125693	+	209	163849575	-	Mext_0119	-	integrase family protein
119	 63.11	-1	125636..126253	-	205	163849576	-	Mext_0120	-	hypothetical protein
120	 61.64	-1	126855..128168	-	437	163849577	-	Mext_0121	-	major facilitator transporter
121	 64.26	-1	128592..129257	-	221	163849578	-	Mext_0122	-	integrase, catalytic region
122	 62.53	-1	130415..132493	+	692	163849579	-	Mext_0123	-	PAS sensor protein
123	 61.90	-1	133225..134925	-	566	163849580	-	Mext_0124	-	AMP-dependent synthetase and ligase
124	 54.11	-2	135015..135866	+	283	163849581	-	Mext_0125	-	porin
125	 58.79	-2	135978..136916	-	312	163849582	-	Mext_0126	-	alpha/beta hydrolase domain-containing protein
126	 61.63	-1	137062..137319	+	85	163849583	-	Mext_0127	-	hypothetical protein
127	 65.70	0	138930..139136	-	68	163849584	-	Mext_0129	-	hypothetical protein
128	 67.93	0	139133..139369	-	78	163849585	-	Mext_0130	-	hypothetical protein
129	 56.15	-2	140434..141507	+	357	163849586	-	Mext_0131	-	hemolysin-type calcium-binding region
130	 64.50	0	142801..143355	+	184	163849587	-	Mext_0132	-	sigma-70 region 2 domain-containing protein
131	 66.47	0	144084..144590	+	168	163849588	-	Mext_0133	-	regulatory protein MarR
132	 63.14	-1	144709..145473	-	254	163849589	-	Mext_0134	-	hypothetical protein
133	 65.58	0	145592..145960	-	122	163849590	-	Mext_0135	-	rare lipoprotein A
134	 63.52	-1	146955..151241	-	1428	163849591	-	Mext_0136	-	diguanylate cyclase
135	 63.70	-1	152043..153254	+	403	163849592	-	Mext_0137	-	hypothetical protein
136	 58.33	-2	153292..153699	+	135	163849593	-	Mext_0138	-	TadE family protein
137	 59.80	-2	153975..154280	+	101	163849594	-	Mext_0139	-	hypothetical protein
138	 65.36	0	155000..155305	-	101	163849595	-	Mext_0140	-	hypothetical protein
139	 66.67	0	155305..157002	-	565	163849596	-	Mext_0141	-	chemotaxis sensory transducer
140	 60.71	-1	157274..157609	-	111	163849597	-	Mext_0142	-	integrase, catalytic region
141	 65.12	0	157640..157768	-	42	163849598	-	Mext_0143	-	hypothetical protein
142	 62.18	-1	159244..159600	+	118	163849599	-	Mext_0144	-	hypothetical protein
143	 59.06	-2	159907..160248	+	113	163849600	-	Mext_0145	-	hypothetical protein
144	 63.97	-1	160542..160949	-	135	163849601	-	Mext_0146	-	hypothetical protein
145	 65.58	0	160982..161443	-	153	163849602	-	Mext_0147	-	hypothetical protein
146	 57.30	-2	162144..162698	+	184	163849603	-	Mext_0148	-	hypothetical protein
147	 60.20	-2	163251..166871	-	1206	163849604	-	Mext_0150	-	outer membrane adhesin like proteiin
148	 62.04	-1	167643..167858	+	71	163849605	-	Mext_0151	-	hypothetical protein
149	 71.74	0	167931..168068	+	45	163849606	-	Mext_0152	-	hypothetical protein
150	 66.21	0	168080..168298	+	72	163849607	-	Mext_0153	-	hypothetical protein
151	 62.22	-1	168920..169324	+	134	163849608	-	Mext_0154	-	helix-turn-helix domain-containing protein
152	 61.52	-1	169575..169982	+	135	163849609	-	Mext_0155	-	helix-turn-helix domain-containing protein
153	 60.91	-1	170460..170945	-	161	163849610	-	Mext_0156	-	hypothetical protein
154	 62.38	-1	171034..172107	-	357	163849611	-	Mext_0157	-	hypothetical protein
155	 58.02	-2	172104..172496	-	130	163849612	-	Mext_0158	-	hypothetical protein
156	 56.04	-2	172493..173047	-	184	163849613	-	Mext_0159	-	hypothetical protein
157	 57.06	-2	173056..174585	-	509	163849614	-	Mext_0160	-	hypothetical protein
158	 54.85	-2	174686..176377	+	563	163849615	-	Mext_0161	-	hypothetical protein
159	 65.03	0	176402..176767	-	121	163849616	-	Mext_0162	-	hypothetical protein
160	 64.39	-1	176990..177559	+	189	163849617	-	Mext_0163	-	integrase family protein
161	 67.12	0	178135..178794	+	219	163849618	-	Mext_0164	-	ErfK/YbiS/YcfS/YnhG family protein
162	 66.85	0	178932..180023	-	363	163849619	-	Mext_0165	-	lytic transglycosylase catalytic
163	 61.96	-1	180413..180688	-	91	163849620	-	Mext_0166	-	hypothetical protein
164	 63.23	-1	180782..181945	-	387	163849621	-	Mext_0167	-	hypothetical protein
165	 60.75	-1	182013..182198	+	61	163849622	-	Mext_0168	-	hypothetical protein
166	 60.71	-1	182218..182670	+	150	163849623	-	Mext_0169	-	hypothetical protein
167	 65.24	0	183431..183991	+	186	163849624	-	Mext_0170	-	ROSMUCR transcriptional regulator
168	 66.81	0	183988..184692	-	234	163849625	-	Mext_0171	-	dienelactone hydrolase
169	 64.07	-1	185264..185494	+	76	163849626	-	Mext_0172	-	hypothetical protein
170	 44.79	-2	185773..187317	-	514	163849627	-	Mext_0173	-	hypothetical protein
171	 44.66	-2	187499..188125	-	208	163849628	-	Mext_0174	-	putative transmembrane protein
172	 65.99	0	188402..189724	-	440	163849629	-	Mext_0175	-	integrase family protein
173	 66.90	0	190109..191401	-	430	163849630	-	Mext_0176	-	tryptophan synthase subunit beta
174	 70.99	0	191473..192120	-	215	163849631	-	Mext_0177	-	phosphoribosylanthranilate isomerase
175	 68.83	0	192137..192505	-	122	163849632	-	Mext_0178	-	hypothetical protein
176	 67.96	0	192731..193039	-	102	163849633	-	Mext_0179	-	integration host factor, beta subunit
177	 68.74	0	193081..194046	-	321	163849634	-	Mext_0180	-	signal peptide peptidase SppA, 36K type
178	 69.46	0	194307..195632	-	441	163849635	-	Mext_0181	-	hypothetical protein
179	 64.51	0	195725..197437	-	570	163849636	-	Mext_0182	-	30S ribosomal protein S1
180	 71.87	0	197852..198658	-	268	163849637	-	Mext_0183	-	RNA methyltransferase
181	 65.01	0	199300..200085	-	261	163849638	-	Mext_0184	-	hypothetical protein
182	 67.52	0	200217..201155	+	312	163849639	-	Mext_0185	-	pirin domain-containing protein
183	 68.99	0	201258..203024	+	588	163849640	-	Mext_0186	-	potassium efflux system protein
184	 71.67	0	203204..203923	+	239	163849641	-	Mext_0187	-	cytochrome c biogenesis protein transmembrane region
185	 69.59	0	204031..204645	+	204	163849642	-	Mext_0188	-	HhH-GPD family protein
186	 67.44	0	204651..204908	-	85	163849643	-	Mext_0189	-	hypothetical protein
187	 66.67	0	205236..205454	+	72	163849644	-	Mext_0190	-	hypothetical protein
188	 69.55	0	205569..207266	-	565	163849645	-	Mext_0191	-	chemotaxis sensory transducer
189	 66.36	0	207649..209271	+	540	163849646	-	Mext_0192	-	ABC transporter related
190	 71.99	0	209279..209635	-	118	163849647	-	Mext_0193	-	hypothetical protein
191	 68.75	0	209645..209884	-	79	163849648	-	Mext_0194	-	hypothetical protein
192	 70.39	0	210102..210746	-	214	163849649	-	Mext_0195	-	hypothetical protein
68.64	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.