IslandPathversion 1.0

IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.64 STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1142	 70.17	0	1287933..1289018	-	361	163850599	-	Mext_1169	-	ABC transporter substrate-binding protein
1143	 74.17	+1	1289556..1290701	+	381	163850600	-	Mext_1170	-	acyl-CoA dehydrogenase domain-containing protein
1144	 72.77	0	1290720..1291817	+	365	163850601	-	Mext_1171	-	alkanesulfonate monooxygenase
1145	 73.04	+1	1291817..1292758	+	313	163850602	-	Mext_1172	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
1146	 69.24	0	1292784..1293326	+	180	163850603	-	Mext_1173	-	cupin 2 domain-containing protein
1147	 72.16	0	1293438..1293728	+	96	163850604	-	Mext_1174	-	O-acetylhomoserine sulfhydrylase-like protein
1148	 68.14	0	1293993..1294196	+	67	163850605	-	Mext_1175	-	hypothetical protein
1149	 70.80	0	1294282..1295127	+	281	163850606	-	Mext_1176	-	serine O-acetyltransferase
1150	 69.25	0	1295548..1296939	+	463	163850607	-	Mext_1177	-	cyclic nucleotide-binding
1151	 69.94	0	1296926..1298944	+	672	163850608	-	Mext_1178	-	SufS subfamily cysteine desulfurase
1152	 63.37	-1	1299020..1300051	-	343	163850609	-	Mext_1179	-	hypothetical protein
1153	 68.29	0	1300642..1300887	+	81	163850610	-	Mext_1180	-	LysR family transcriptional regulator
1154	 66.87	0	1301268..1302245	+	325	163850611	-	Mext_1181	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1155	 68.97	0	1302473..1303342	+	289	163850612	-	Mext_1182	-	porin
1156	 62.70	-1	1303731..1303982	+	83	163850613	-	Mext_1183	-	hypothetical protein
1157	 66.91	0	1303994..1304407	+	137	163850614	-	Mext_1184	-	hypothetical protein
1158	 62.38	-1	1305778..1305987	+	69	163850615	-	Mext_1185	-	cold-shock protein DNA-binding
1159	 61.79	-1	1306195..1306440	+	81	163850616	-	Mext_1186	-	putative signal peptide
1160	 64.86	0	1306597..1306929	-	110	163850617	-	Mext_1187	-	hypothetical protein
1161	 68.40	0	1307285..1309243	+	652	163850618	-	Mext_1188	-	hypothetical protein
1162	 70.49	0	1309415..1310146	-	243	163850619	-	Mext_1189	-	putative ABC-type Co2+ transport system, periplasmic component
1163	 70.57	0	1310553..1313678	-	1041	163850620	-	Mext_1190	-	PAS sensor protein
1164	 69.53	0	1313860..1314558	-	232	163850621	-	Mext_1191	-	hypothetical protein
1165	 60.92	-1	1314999..1316966	+	655	163850622	-	Mext_1192	-	67 kDa myosin-cross-reactive antigen family protein
1166	 72.58	0	1317265..1318296	+	343	163850623	-	Mext_1193	-	hypothetical protein
1167	 71.46	0	1318586..1319044	+	152	163850624	-	Mext_1194	-	urease accessory protein UreE
1168	 74.60	+1	1319049..1319729	+	226	163850625	-	Mext_1195	-	urease accessory protein UreF
1169	 70.83	0	1319743..1320438	+	231	163850626	-	Mext_1196	-	bifunctional urease subunit gamma/beta
1170	 67.48	0	1320454..1322166	+	570	163850627	-	Mext_1197	-	urease subunit alpha
1171	 70.54	0	1322163..1322807	+	214	163850628	-	Mext_1198	-	urease accessory protein UreG
1172	 74.01	+1	1322807..1323691	+	294	163850629	-	Mext_1199	-	urease accessory protein UreD
1173	 64.01	-1	1323881..1325122	+	413	163850630	-	Mext_1200	-	urea ABC transporter, urea binding protein
1174	 70.51	0	1325138..1326334	-	398	163850631	-	Mext_1201	-	hypothetical protein
1175	 69.23	0	1326334..1328478	-	714	163850632	-	Mext_1202	-	TonB-dependent siderophore receptor
1176	 74.64	+1	1329285..1330475	+	396	163850633	-	Mext_1203	-	hypothetical protein
1177	 69.11	0	1330597..1330965	-	122	163850634	-	Mext_1204	-	hypothetical protein
1178	 69.37	0	1330998..1331441	-	147	163850635	-	Mext_1205	-	OsmC family protein
1179	 69.56	0	1331708..1332157	+	149	163850636	-	Mext_1206	-	PAS sensor protein
1180	 65.55	0	1332258..1333508	+	416	163850637	-	Mext_1207	-	formyl-coenzyme A transferase
1181	 68.89	0	1334066..1334785	-	239	163850638	-	Mext_1208	-	phospholipase/carboxylesterase
1182	 67.69	0	1335051..1336802	-	583	163850639	-	Mext_1209	-	putative oxalyl-CoA decarboxylase
1183	 68.54	0	1337278..1339623	-	781	163850640	-	Mext_1210	-	galactose oxidase
1184	 66.97	0	1339922..1341247	-	441	163850641	-	Mext_1211	-	major facilitator transporter
1185	 65.97	0	1341512..1342810	-	432	163850642	-	Mext_1212	-	major facilitator transporter
1186	 67.12	0	1343351..1343791	+	146	163850643	-	Mext_1213	-	CBS domain-containing protein
1187	 63.95	-1	1343946..1344239	+	97	163850644	-	Mext_1214	-	hypothetical protein
1188	 71.41	0	1344262..1346118	+	618	163850645	-	Mext_1215	-	hypothetical protein
1189	 74.40	+1	1346338..1346505	+	55	163850646	-	Mext_1216	-	hypothetical protein
1190	 67.21	0	1346853..1348142	-	429	163850647	-	Mext_1217	-	formyl-CoA transferase
1191	 66.00	0	1348478..1349230	+	250	163850648	-	Mext_1218	-	GntR domain-containing protein
1192	 69.94	0	1349363..1350463	-	366	163850649	-	Mext_1219	-	cobalamin synthesis protein P47K
1193	 70.85	0	1350595..1352100	-	501	163850650	-	Mext_1220	-	Serine-type D-Ala-D-Ala carboxypeptidase
1194	 69.95	0	1352372..1353010	+	212	163850651	-	Mext_1221	-	hypothetical protein
1195	 68.04	0	1353174..1353611	+	145	163850652	-	Mext_1222	-	hypothetical protein
1196	 68.07	0	1353704..1353988	+	94	163850653	-	Mext_1223	-	hypothetical protein
1197	 64.41	-1	1354081..1355322	-	413	163850654	-	Mext_1224	-	monooxygenase FAD-binding
1198	 65.83	0	1356155..1356511	+	118	163850655	-	Mext_1225	-	queuosine biosynthesis protein QueD
1199	 70.77	0	1356514..1357245	+	243	163850656	-	Mext_1226	-	exsB protein
1200	 72.36	0	1357256..1357993	+	245	163850657	-	Mext_1227	-	LmbE family protein
1201	 74.34	+1	1358051..1358923	+	290	163850658	-	Mext_1228	-	glycosyl transferase family protein
1202	 67.21	0	1359317..1359499	+	60	163850659	-	Mext_1229	-	hypothetical protein
1203	 70.07	0	1359790..1360083	+	97	163850660	-	Mext_1230	-	hypothetical protein
1204	 74.48	+1	1360231..1361280	-	349	163850661	-	Mext_1231	-	hypothetical protein
1205	 75.57	+1	1361340..1362428	-	362	163850662	-	Mext_1232	-	glycosyl transferase family protein
1206	 71.98	0	1362433..1363599	-	388	163850663	-	Mext_1233	-	glycosyl transferase group 1
1207	 71.91	0	1364042..1364365	-	107	163850664	-	Mext_1234	-	HPr family phosphocarrier protein
1208	 64.43	-1	1364517..1364918	-	133	163850665	-	Mext_1235	-	PTS system fructose subfamily IIA component
1209	 73.11	+1	1365044..1365571	-	175	163850666	-	Mext_1236	-	HPr kinase
1210	 71.15	0	1365568..1367418	-	616	163850667	-	Mext_1237	-	ATPase domain-containing protein
1211	 65.55	0	1367447..1368160	-	237	163850668	-	Mext_1238	-	response regulator receiver
1212	 75.25	+1	1368559..1369374	+	271	163850669	-	Mext_1239	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1213	 65.46	0	1369520..1371340	+	606	163850670	-	Mext_1240	-	GTP-binding protein LepA
1214	 68.26	0	1371780..1373033	+	417	163850671	-	Mext_1241	-	RND family efflux transporter MFP subunit
1215	 68.02	0	1373125..1376295	+	1056	163850672	-	Mext_1242	-	CzcA family heavy metal efflux protein
1216	 73.72	+1	1376429..1376584	-	51	163850673	-	Mext_1243	-	LacI family transcriptional regulator
1217	 68.69	0	1376751..1377836	-	361	163850674	-	Mext_1244	-	hypothetical protein
1218	 69.99	0	1377885..1381073	-	1062	163850675	-	Mext_1245	-	glycosyl transferase family protein
1219	 62.83	-1	1381141..1382340	-	399	163850676	-	Mext_1246	-	hypothetical protein
1220	 64.00	-1	1382524..1383723	-	399	163850677	-	Mext_1247	-	hypothetical protein
1221	 64.99	0	1383927..1384343	+	138	163850678	-	Mext_1248	-	flagellar FlbT family protein
1222	 71.76	0	1384443..1384658	-	71	163850679	-	Mext_1249	-	hypothetical protein
1223	 70.96	0	1384753..1385916	-	387	163850680	-	Mext_1250	-	acyltransferase 3
1224	 68.54	0	1386220..1387605	+	461	163850681	-	Mext_1251	-	metal-dependent phosphohydrolase
1225	 74.34	+1	1387707..1388084	-	125	163850682	-	Mext_1252	-	hypothetical protein
1226	 74.36	+1	1388261..1388689	+	142	163850683	-	Mext_1253	-	hypothetical protein
1227	 71.31	0	1388820..1389572	-	250	163850684	-	Mext_1254	-	methionine aminopeptidase
1228	 70.61	0	1390196..1390855	+	219	163850685	-	Mext_1255	-	hypothetical protein
1229	 66.67	0	1390890..1391807	-	305	163850686	-	Mext_1256	-	hypothetical protein
1230	 72.49	0	1392182..1393039	-	285	163850687	-	Mext_1257	-	hypothetical protein
1231	 70.87	0	1393039..1394394	-	451	163850688	-	Mext_1258	-	sigma-54 factor interaction domain-containing protein
1232	 72.46	0	1394384..1396264	-	626	163850689	-	Mext_1259	-	ATPase domain-containing protein
1233	 68.48	0	1396528..1397409	-	293	163850690	-	Mext_1260	-	ABC transporter related
1234	 67.15	0	1397418..1398239	-	273	163850691	-	Mext_1261	-	binding-protein-dependent transport systems inner membrane component
1235	 66.46	0	1398252..1399232	-	326	163850692	-	Mext_1262	-	NMT1/THI5-like domain-containing protein
1236	 72.90	+1	1399496..1400233	-	245	163850693	-	Mext_1263	-	septum formation inhibitor
1237	 70.47	0	1400357..1401646	-	429	163850694	-	Mext_1264	-	hypothetical protein
1238	 65.52	0	1401964..1403790	+	608	163850695	-	Mext_1265	-	GTP-binding protein TypA
1239	 71.05	0	1403933..1405621	-	562	163850696	-	Mext_1266	-	chemotaxis sensory transducer
1240	 70.58	0	1406041..1406679	+	212	163850697	-	Mext_1267	-	septum formation inhibitor
1241	 67.65	0	1406692..1407507	+	271	163850698	-	Mext_1268	-	septum site-determining protein MinD
68.64	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.