IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
917	 40.12	0	1085419..1086273	+	284	91772999	-	Mbur_1002	-	metal-dependent phosphohydrolase
918	 40.20	0	1086313..1086822	-	169	91773000	-	Mbur_1003	-	hypothetical protein
919	 44.19	0	1087102..1088418	+	438	91773001	-	Mbur_1004	-	hypothetical protein
920	 41.71	0	1088725..1089762	+	345	91773002	-	Mbur_1005	-	methylcobalamin:coenzyme M methyltransferase
921	 41.60	0	1089920..1090282	+	120	91773003	-	Mbur_1006	-	desulfoferrodoxin
922	 44.69	0	1090326..1090871	-	181	91773004	-	Mbur_1007	-	4Fe-4S ferredoxin, iron-sulfur binding
923	 47.22	+1	1091113..1091688	+	191	91773005	-	Mbur_1008	-	PBP family phospholipid-binding protein
924	 47.50	+1	1091712..1092071	-	119	91773006	-	Mbur_1009	-	cupin family protein
925	 47.58	+1	1092061..1092846	-	261	91773007	-	Mbur_1010	-	cobyrinic acid a,c-diamide synthase
926	 42.41	0	1092993..1093862	+	289	91773008	-	Mbur_1011	-	cation diffusion facilitator family transporter
927	 47.32	+1	1093889..1094989	+	366	91773009	-	Mbur_1012	-	chorismate synthase
928	 47.67	+1	1095149..1096306	-	385	91773010	-	Mbur_1013	-	aspartate aminotransferase
929	 43.96	0	1096443..1097270	-	275	91773011	-	Mbur_1014	-	acetolactate decarboxylase
930	 43.52	0	1097573..1098505	+	310	91773012	-	Mbur_1015	-	solute binding protein
931	 47.47	+1	1098518..1099267	+	249	91773013	-	Mbur_1016	-	ABC transporter, ATPase subunit
932	 40.94	0	1099281..1100108	+	275	91773014	-	Mbur_1017	-	ABC transporter, inner membrane subunit
933	 46.11	0	1101185..1102624	+	479	91773015	-	Mbur_1020	-	sodium--dicarboxylate symporter
934	 40.52	0	1103729..1105900	+	723	91773016	-	Mbur_1023	-	Cache sensor signal transduction histidine kinase
935	 40.35	0	1106056..1107951	+	631	91773017	-	Mbur_1024	-	PAS/PAC sensor signal transduction histidine kinase
936	 46.14	0	1108083..1109558	+	491	91773018	-	Mbur_1025	-	argininosuccinate lyase
937	 45.83	0	1109590..1110837	+	415	91773019	-	Mbur_1026	-	glutamyl-tRNA(Gln) amidotransferase subunit D
938	 43.19	0	1110923..1111399	-	158	91773020	-	Mbur_1027	-	hypothetical protein
939	 38.21	0	1111428..1111673	-	81	91773021	-	Mbur_1028	-	hypothetical protein
940	 44.99	0	1111845..1113002	-	385	91773022	purP	Mbur_1029	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
941	 41.51	0	1113101..1113748	-	215	91773023	-	Mbur_1030	-	hypothetical protein
942	 42.49	0	1113754..1114605	-	283	91773024	-	Mbur_1031	-	hypothetical protein
943	 46.37	0	1114698..1115771	+	357	91773025	egsA	Mbur_1032	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
944	 43.27	0	1115895..1116347	+	150	91773026	-	Mbur_1033	-	hypothetical protein
945	 45.51	0	1116424..1117047	+	207	91773027	-	Mbur_1034	-	hypothetical protein
946	 43.43	0	1117425..1117820	+	131	91773028	-	Mbur_1035	-	sirohydrochlorin cobaltochelatase
947	 43.00	0	1117835..1119199	+	454	91773029	-	Mbur_1036	-	hypothetical protein
948	 47.35	+1	1119253..1120365	+	370	91773030	-	Mbur_1037	-	hypothetical protein
949	 48.30	+1	1120382..1121176	+	264	91773031	-	Mbur_1038	-	nitrogenase iron protein subunit NifH
950	 46.73	+1	1121191..1122660	+	489	91773032	-	Mbur_1039	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
951	 45.64	0	1122657..1123712	+	351	91773033	-	Mbur_1040	-	tRNA splicing endonuclease
952	 45.53	0	1123766..1124470	+	234	91773034	-	Mbur_1041	-	Ala-tRNA(Pro) hydrolase
953	 46.54	+1	1124494..1125591	-	365	91773035	-	Mbur_1042	-	cytochrome c assembly protein
954	 42.48	0	1126757..1127248	-	163	91773036	-	Mbur_1044	-	rubrerythrin
955	 32.94	-1	1128007..1128774	+	255	91773037	-	Mbur_1046	-	hypothetical protein
956	 40.88	0	1129377..1130489	+	370	91773038	-	Mbur_1047	-	Fe3+-hydroxamate binding protein
957	 43.62	0	1130648..1131658	+	336	91773039	-	Mbur_1048	-	ABC Fe3+-siderophore transporter, inner membrane subunit
958	 40.11	0	1131658..1132410	+	250	91773040	-	Mbur_1049	-	ABC cobalamin/Fe3+-siderophores transporter, ATPase subunit
959	 39.06	0	1132456..1133031	-	191	91773041	-	Mbur_1050	-	hypothetical protein
960	 46.02	0	1133655..1134182	+	175	91773042	-	Mbur_1051	-	hypothetical protein
961	 41.89	0	1134200..1134748	+	182	91773043	-	Mbur_1052	-	orotate phosphoribosyltransferase
962	 44.63	0	1134980..1136599	+	539	91773044	-	Mbur_1053	-	hydroxylamine reductase
963	 43.17	0	1136666..1136980	+	104	91773045	-	Mbur_1054	-	cupin family protein
964	 39.55	0	1137051..1137404	-	117	91773046	-	Mbur_1055	-	hypothetical protein
965	 48.81	+1	1137735..1139033	+	432	91773047	-	Mbur_1056	-	phosphoribosylamine--glycine ligase
966	 48.12	+1	1139056..1139961	+	301	91773048	-	Mbur_1057	-	ornithine carbamoyltransferase
967	 37.93	0	1140871..1141566	-	231	91773049	-	Mbur_1058	-	4Fe-4S ferredoxin, iron-sulfur binding
968	 37.98	0	1141965..1142330	+	121	91773050	-	Mbur_1060	-	hypothetical protein
969	 32.54	-2	1142548..1143180	-	210	91773051	-	Mbur_1061	-	hypothetical protein
970	 41.47	0	1143449..1144099	+	216	91773052	-	Mbur_1062	-	hypothetical protein
971	 41.48	0	1144366..1145802	+	478	91773053	-	Mbur_1063	-	K+ transporter Trk
972	 36.75	-1	1146013..1146246	+	77	91773054	-	Mbur_1064	-	hypothetical protein
973	 40.74	0	1146261..1146530	+	89	91773055	-	Mbur_1065	-	hypothetical protein
974	 35.82	-1	1146851..1147975	-	374	91773056	-	Mbur_1067	-	transposase, mutator type
975	 43.49	0	1148412..1148933	+	173	91773057	-	Mbur_1069	-	hypothetical protein
976	 34.73	-1	1149243..1149671	+	142	91773058	-	Mbur_1070	-	hypothetical protein
977	 37.97	0	1149924..1150160	+	78	91773059	-	Mbur_1071	-	hypothetical protein
978	 34.81	-1	1150271..1150744	-	157	91773060	-	Mbur_1072	-	hypothetical protein
979	 45.56	0	1150993..1152006	+	337	91773061	-	Mbur_1073	-	isocitrate dehydrogenase (NADP)
980	 37.04	-1	1152126..1153313	-	395	91773062	-	Mbur_1074	-	MscS mechanosensitive ion channel
981	 43.66	0	1153530..1154807	-	425	91773063	-	Mbur_1075	-	pyruvate carboxyltransferase
982	 44.44	0	1155163..1155666	+	167	91773064	-	Mbur_1076	-	amino acid-binding protein
983	 45.42	0	1155672..1156871	-	399	91773065	-	Mbur_1077	-	geranylgeranyl reductase
984	 45.25	0	1156906..1158189	-	427	91773066	-	Mbur_1078	-	3-phosphoshikimate 1-carboxyvinyltransferase
985	 43.43	0	1158190..1158843	-	217	91773067	thyA	Mbur_1079	-	thymidylate synthase
986	 38.40	0	1159211..1159585	+	124	91773068	-	Mbur_1080	-	hypothetical protein
987	 38.70	0	1159752..1160198	+	148	91773069	-	Mbur_1081	-	hypothetical protein
988	 47.20	+1	1160203..1161060	-	285	91773070	-	Mbur_1082	-	HtpX-2 peptidase
989	 43.92	0	1161427..1161681	-	84	91773071	-	Mbur_1083	-	hypothetical protein
990	 43.43	0	1161684..1163099	-	471	91773072	-	Mbur_1084	-	hypothetical protein
991	 40.78	0	1163504..1164376	+	290	91773073	-	Mbur_1085	-	hypothetical protein
992	 43.00	0	1164461..1164967	+	168	91773074	-	Mbur_1086	-	hypothetical protein
993	 46.29	0	1164981..1165976	+	331	91773075	-	Mbur_1087	-	homoserine dehydrogenase
994	 45.66	0	1166020..1167723	+	567	91773076	-	Mbur_1088	-	DNA ligase I, ATP-dependent (dnl1)
995	 38.29	0	1168744..1169934	+	396	91773077	-	Mbur_1089	-	cell surface protein
996	 43.08	0	1169976..1170827	+	283	91773078	-	Mbur_1090	-	methyltransferase
997	 42.35	0	1170824..1171588	+	254	91773079	-	Mbur_1091	-	cobyrinic acid a,c-diamide synthase
998	 42.76	0	1171625..1172239	+	204	91773080	-	Mbur_1092	-	hypothetical protein
999	 42.62	0	1172236..1173516	+	426	91773081	-	Mbur_1093	-	Fe3+-hydroxamate binding protein
1000	 40.91	0	1173616..1174737	+	373	91773082	-	Mbur_1094	-	ABC Fe3+-siderophore transporter, inner membrane subunit
1001	 40.81	0	1174739..1175527	+	262	91773083	-	Mbur_1095	-	ABC cobalamin/Fe3+-siderophores transporter, ATPase subunit
1002	 47.79	+1	1177539..1178783	-	414	91773084	-	Mbur_1098	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
1003	 38.25	0	1179227..1179796	+	189	91773085	-	Mbur_1099	-	hypothetical protein
1004	 45.82	0	1179980..1181284	+	434	91773086	-	Mbur_1100	-	tryptophan synthase subunit beta
1005	 42.60	0	1181345..1181959	-	204	91773087	-	Mbur_1101	-	endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
1006	 44.55	0	1182074..1184356	+	760	91773088	-	Mbur_1102	-	ski2-like helicase
1007	 46.60	+1	1184434..1185714	+	426	91773089	hisD	Mbur_1103	-	histidinol dehydrogenase
1008	 36.59	-1	1185819..1186217	+	132	91773090	-	Mbur_1104	-	hypothetical protein
1009	 50.07	+1	1186426..1187178	+	250	91773091	-	Mbur_1105	-	uroporphyrinogen-III C-methyltransferase
1010	 43.20	0	1187209..1188009	+	266	91773092	hemD	Mbur_1106	-	uroporphyrinogen-III synthase
1011	 29.59	-2	1189453..1189986	-	177	91773093	-	Mbur_1108	-	hypothetical protein
1012	 36.69	-1	1190058..1190771	-	237	91773094	-	Mbur_1109	-	hypothetical protein
1013	 31.88	-2	1191002..1191277	-	91	91773095	-	Mbur_1110	-	hypothetical protein
1014	 38.94	0	1191464..1192711	-	415	91773096	-	Mbur_1111	-	YVTN beta-propeller repeat-containing protein
1015	 37.98	0	1192947..1194152	-	401	91773097	-	Mbur_1112	-	hypothetical protein
1016	 41.82	0	1194669..1195481	+	270	91773098	-	Mbur_1113	-	ArsR family transcriptional regulator
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.