IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
871	 47.23	+1	1031441..1032865	-	474	91772953	-	Mbur_0953	-	FAD linked oxidase-like protein
872	 45.08	0	1032878..1034128	-	416	91772954	-	Mbur_0954	-	hypothetical protein
873	 33.20	-1	1034571..1036868	+	765	91772955	-	Mbur_0955	-	PAS/PAC sensor signal transduction histidine kinase
874	 33.33	-1	1037002..1037646	+	214	91772956	-	Mbur_0956	-	cobalamin B12-binding protein
875	 41.17	0	1037643..1038689	+	348	91772957	-	Mbur_0957	-	uroporphyrinogen decarboxylase
876	 34.81	-1	1038696..1040387	+	563	91772958	-	Mbur_0958	-	ATP-binding region, ATPase-like protein
877	 37.85	0	1040734..1041420	+	228	91772959	-	Mbur_0959	-	peroxiredoxin
878	 45.18	0	1042532..1043527	-	331	91772960	-	Mbur_0961	-	methyltransferase
879	 45.63	0	1043553..1044170	-	205	91772961	-	Mbur_0962	-	lysine exporter protein LysE/YggA
880	 47.34	+1	1044265..1045278	-	337	91772962	tfb	Mbur_0963	-	transcription initiation factor IIB
881	 35.92	-1	1045348..1045656	-	102	91772963	-	Mbur_0964	-	RNA-binding protein
882	 35.82	-1	1045968..1047092	+	374	91772964	-	Mbur_0965	-	transposase, mutator type
883	 47.01	+1	1047420..1050074	+	884	91772965	-	Mbur_0966	-	pyruvate phosphate dikinase
884	 44.41	0	1050262..1051164	-	300	91772966	-	Mbur_0967	-	cytidine kinase / inosine-guanosine kinase
885	 42.03	0	1051178..1051522	-	114	91772967	-	Mbur_0968	-	hypothetical protein
886	 45.04	0	1051599..1051880	-	93	91772968	-	Mbur_0969	-	hypothetical protein
887	 44.56	0	1051929..1053602	-	557	91772969	-	Mbur_0970	-	hypothetical protein
888	 46.27	0	1053703..1054506	-	267	91772970	-	Mbur_0971	-	diphthine synthase
889	 45.91	0	1054674..1056287	+	537	91772971	-	Mbur_0972	-	chaperonin Cpn60/TCP-1
890	 42.44	0	1056307..1056888	-	193	91772972	-	Mbur_0973	-	hypothetical protein
891	 38.10	0	1057046..1057360	-	104	91772973	-	Mbur_0974	-	Sec-independent protein translocase TatA
892	 31.31	-2	1058199..1058987	+	262	91772974	-	Mbur_0976	-	hypothetical protein
893	 37.43	0	1058990..1059940	+	316	91772975	-	Mbur_0977	-	hypothetical protein
894	 35.42	-1	1059966..1061066	+	366	91772976	-	Mbur_0978	-	hypothetical protein
895	 44.54	0	1061189..1061866	-	225	91772977	-	Mbur_0979	-	RNA-binding S4
896	 45.89	0	1061938..1063020	-	360	91772978	-	Mbur_0980	-	NADH peroxidase
897	 46.89	+1	1063076..1063783	-	235	91772979	-	Mbur_0981	-	ABC heme exporter, inner membrane subunit C
898	 45.33	0	1063847..1064521	-	224	91772980	-	Mbur_0982	-	ABC heme exporter, inner membrane subunit B
899	 42.95	0	1064534..1065334	-	266	91772981	-	Mbur_0983	-	ABC heme exporter, ATPase subunit
900	 36.51	-1	1065616..1066842	+	408	91772982	-	Mbur_0984	-	hypothetical protein
901	 41.27	0	1066858..1068066	+	402	91772983	-	Mbur_0985	-	hypothetical protein
902	 44.06	0	1068068..1068766	+	232	91772984	-	Mbur_0986	-	ABC transporter, ATPase subunit
903	 34.69	-1	1068880..1069173	+	97	91772985	-	Mbur_0987	-	hypothetical protein
904	 29.70	-2	1070009..1070614	-	201	91772986	-	Mbur_0988	-	hypothetical protein
905	 32.30	-2	1070797..1071279	-	160	91772987	-	Mbur_0989	-	hypothetical protein
906	 38.91	0	1071948..1072736	-	262	91772988	-	Mbur_0990	-	metal-dependent phosphohydrolase
907	 44.88	0	1073287..1074195	+	302	91772989	-	Mbur_0991	-	hypothetical protein
908	 40.95	0	1074249..1075154	-	301	91772990	-	Mbur_0992	-	hypothetical protein
909	 46.75	+1	1075381..1075842	+	153	91772991	-	Mbur_0993	-	hypothetical protein
910	 47.45	+1	1076139..1078157	-	672	91772992	hppA	Mbur_0994	-	membrane-bound proton-translocating pyrophosphatase
911	 37.27	-1	1079080..1079562	-	160	91772993	-	Mbur_0996	-	hypothetical protein
912	 38.72	0	1080206..1080706	+	166	91772994	-	Mbur_0997	-	hypothetical protein
913	 40.35	0	1080958..1081299	-	113	91772995	-	Mbur_0998	-	ABC transporter, ATPase subunit
914	 46.41	+1	1081419..1083368	+	649	91772996	-	Mbur_0999	-	acetyl-coenzyme A synthetase
915	 48.77	+1	1083437..1084084	+	215	91772997	-	Mbur_1000	-	orotidine-5'-phosphate decarboxylase
916	 43.69	0	1084155..1085264	+	369	91772998	-	Mbur_1001	-	hypothetical protein
917	 40.12	0	1085419..1086273	+	284	91772999	-	Mbur_1002	-	metal-dependent phosphohydrolase
918	 40.20	0	1086313..1086822	-	169	91773000	-	Mbur_1003	-	hypothetical protein
919	 44.19	0	1087102..1088418	+	438	91773001	-	Mbur_1004	-	hypothetical protein
920	 41.71	0	1088725..1089762	+	345	91773002	-	Mbur_1005	-	methylcobalamin:coenzyme M methyltransferase
921	 41.60	0	1089920..1090282	+	120	91773003	-	Mbur_1006	-	desulfoferrodoxin
922	 44.69	0	1090326..1090871	-	181	91773004	-	Mbur_1007	-	4Fe-4S ferredoxin, iron-sulfur binding
923	 47.22	+1	1091113..1091688	+	191	91773005	-	Mbur_1008	-	PBP family phospholipid-binding protein
924	 47.50	+1	1091712..1092071	-	119	91773006	-	Mbur_1009	-	cupin family protein
925	 47.58	+1	1092061..1092846	-	261	91773007	-	Mbur_1010	-	cobyrinic acid a,c-diamide synthase
926	 42.41	0	1092993..1093862	+	289	91773008	-	Mbur_1011	-	cation diffusion facilitator family transporter
927	 47.32	+1	1093889..1094989	+	366	91773009	-	Mbur_1012	-	chorismate synthase
928	 47.67	+1	1095149..1096306	-	385	91773010	-	Mbur_1013	-	aspartate aminotransferase
929	 43.96	0	1096443..1097270	-	275	91773011	-	Mbur_1014	-	acetolactate decarboxylase
930	 43.52	0	1097573..1098505	+	310	91773012	-	Mbur_1015	-	solute binding protein
931	 47.47	+1	1098518..1099267	+	249	91773013	-	Mbur_1016	-	ABC transporter, ATPase subunit
932	 40.94	0	1099281..1100108	+	275	91773014	-	Mbur_1017	-	ABC transporter, inner membrane subunit
933	 46.11	0	1101185..1102624	+	479	91773015	-	Mbur_1020	-	sodium--dicarboxylate symporter
934	 40.52	0	1103729..1105900	+	723	91773016	-	Mbur_1023	-	Cache sensor signal transduction histidine kinase
935	 40.35	0	1106056..1107951	+	631	91773017	-	Mbur_1024	-	PAS/PAC sensor signal transduction histidine kinase
936	 46.14	0	1108083..1109558	+	491	91773018	-	Mbur_1025	-	argininosuccinate lyase
937	 45.83	0	1109590..1110837	+	415	91773019	-	Mbur_1026	-	glutamyl-tRNA(Gln) amidotransferase subunit D
938	 43.19	0	1110923..1111399	-	158	91773020	-	Mbur_1027	-	hypothetical protein
939	 38.21	0	1111428..1111673	-	81	91773021	-	Mbur_1028	-	hypothetical protein
940	 44.99	0	1111845..1113002	-	385	91773022	purP	Mbur_1029	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
941	 41.51	0	1113101..1113748	-	215	91773023	-	Mbur_1030	-	hypothetical protein
942	 42.49	0	1113754..1114605	-	283	91773024	-	Mbur_1031	-	hypothetical protein
943	 46.37	0	1114698..1115771	+	357	91773025	egsA	Mbur_1032	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
944	 43.27	0	1115895..1116347	+	150	91773026	-	Mbur_1033	-	hypothetical protein
945	 45.51	0	1116424..1117047	+	207	91773027	-	Mbur_1034	-	hypothetical protein
946	 43.43	0	1117425..1117820	+	131	91773028	-	Mbur_1035	-	sirohydrochlorin cobaltochelatase
947	 43.00	0	1117835..1119199	+	454	91773029	-	Mbur_1036	-	hypothetical protein
948	 47.35	+1	1119253..1120365	+	370	91773030	-	Mbur_1037	-	hypothetical protein
949	 48.30	+1	1120382..1121176	+	264	91773031	-	Mbur_1038	-	nitrogenase iron protein subunit NifH
950	 46.73	+1	1121191..1122660	+	489	91773032	-	Mbur_1039	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
951	 45.64	0	1122657..1123712	+	351	91773033	-	Mbur_1040	-	tRNA splicing endonuclease
952	 45.53	0	1123766..1124470	+	234	91773034	-	Mbur_1041	-	Ala-tRNA(Pro) hydrolase
953	 46.54	+1	1124494..1125591	-	365	91773035	-	Mbur_1042	-	cytochrome c assembly protein
954	 42.48	0	1126757..1127248	-	163	91773036	-	Mbur_1044	-	rubrerythrin
955	 32.94	-1	1128007..1128774	+	255	91773037	-	Mbur_1046	-	hypothetical protein
956	 40.88	0	1129377..1130489	+	370	91773038	-	Mbur_1047	-	Fe3+-hydroxamate binding protein
957	 43.62	0	1130648..1131658	+	336	91773039	-	Mbur_1048	-	ABC Fe3+-siderophore transporter, inner membrane subunit
958	 40.11	0	1131658..1132410	+	250	91773040	-	Mbur_1049	-	ABC cobalamin/Fe3+-siderophores transporter, ATPase subunit
959	 39.06	0	1132456..1133031	-	191	91773041	-	Mbur_1050	-	hypothetical protein
960	 46.02	0	1133655..1134182	+	175	91773042	-	Mbur_1051	-	hypothetical protein
961	 41.89	0	1134200..1134748	+	182	91773043	-	Mbur_1052	-	orotate phosphoribosyltransferase
962	 44.63	0	1134980..1136599	+	539	91773044	-	Mbur_1053	-	hydroxylamine reductase
963	 43.17	0	1136666..1136980	+	104	91773045	-	Mbur_1054	-	cupin family protein
964	 39.55	0	1137051..1137404	-	117	91773046	-	Mbur_1055	-	hypothetical protein
965	 48.81	+1	1137735..1139033	+	432	91773047	-	Mbur_1056	-	phosphoribosylamine--glycine ligase
966	 48.12	+1	1139056..1139961	+	301	91773048	-	Mbur_1057	-	ornithine carbamoyltransferase
967	 37.93	0	1140871..1141566	-	231	91773049	-	Mbur_1058	-	4Fe-4S ferredoxin, iron-sulfur binding
968	 37.98	0	1141965..1142330	+	121	91773050	-	Mbur_1060	-	hypothetical protein
969	 32.54	-2	1142548..1143180	-	210	91773051	-	Mbur_1061	-	hypothetical protein
970	 41.47	0	1143449..1144099	+	216	91773052	-	Mbur_1062	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.