IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
842	 45.56	0	994630..996249	+	539	91772924	-	Mbur_0923	-	O-phosphoseryl-tRNA synthetase
843	 43.85	0	996270..996887	+	205	91772925	-	Mbur_0924	-	hypothetical protein
844	 42.05	0	996889..997278	-	129	91772926	-	Mbur_0925	-	hypothetical protein
845	 42.57	0	997285..998031	-	248	91772927	-	Mbur_0926	-	hypothetical protein
846	 44.28	0	998202..998795	+	197	91772928	-	Mbur_0927	-	hypothetical protein
847	 40.44	0	998836..999060	-	74	91772929	-	Mbur_0928	-	hypothetical protein
848	 46.84	+1	999097..999918	-	273	91772930	-	Mbur_0929	-	F420-dependent methylenetetrahydromethanopterin dehydrogenase
849	 42.36	0	1000459..1002198	-	579	91772931	-	Mbur_0930	-	hypothetical protein
850	 32.03	-2	1002511..1002969	+	152	91772932	-	Mbur_0931	-	hypothetical protein
851	 46.45	+1	1003987..1004619	+	210	91772933	-	Mbur_0933	-	Rh-like protein/ammonium transporter
852	 42.34	0	1004719..1005051	+	110	91772934	-	Mbur_0934	-	nitrogen regulatory protein P-II
853	 41.19	0	1005308..1005982	+	224	91772935	-	Mbur_0935	-	phosphoserine phosphatase
854	 44.06	0	1006054..1006911	+	285	91772936	-	Mbur_0936	-	phosphoserine phosphatase
855	 39.15	0	1007099..1011154	-	1351	91772937	-	Mbur_0937	-	KP-43 peptidase
856	 42.93	0	1011343..1012488	-	381	91772938	-	Mbur_0938	-	radical SAM family Fe-S protein
857	 44.91	0	1012493..1013650	-	385	91772939	-	Mbur_0939	-	FAD dependent oxidoreductase
858	 45.54	0	1013666..1014607	-	313	91772940	-	Mbur_0940	-	UbiA prenyltransferase
859	 44.77	0	1014662..1016113	-	483	91772941	-	Mbur_0941	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
860	 39.90	0	1016214..1016594	-	126	91772942	-	Mbur_0942	-	hypothetical protein
861	 35.90	-1	1016612..1016845	-	77	91772943	-	Mbur_0943	-	redox-active disulfide protein 2
862	 39.85	0	1016884..1017927	-	347	91772944	-	Mbur_0944	-	transporter
863	 35.20	-1	1024064..1025185	-	373	91772945	-	Mbur_0945	-	transposase, IS4
864	 37.02	-1	1025554..1026069	+	171	91772946	-	Mbur_0946	-	ArsR family transcriptional regulator
865	 39.62	0	1026281..1027075	+	264	91772947	-	Mbur_0947	-	protein of unknown function RIO1
866	 43.02	0	1027117..1027653	+	178	91772948	-	Mbur_0948	-	putative RNA-processing protein
867	 34.80	-1	1027721..1028128	+	135	91772949	-	Mbur_0949	-	beta-Ig-H3/fasciclin
868	 38.20	0	1028131..1029321	-	396	91772950	-	Mbur_0950	-	PAS/PAC sensor signal transduction histidine kinase
869	 37.89	0	1029379..1030080	-	233	91772951	-	Mbur_0951	-	hypothetical protein
870	 45.81	0	1030343..1031440	-	365	91772952	-	Mbur_0952	-	hypothetical protein
871	 47.23	+1	1031441..1032865	-	474	91772953	-	Mbur_0953	-	FAD linked oxidase-like protein
872	 45.08	0	1032878..1034128	-	416	91772954	-	Mbur_0954	-	hypothetical protein
873	 33.20	-1	1034571..1036868	+	765	91772955	-	Mbur_0955	-	PAS/PAC sensor signal transduction histidine kinase
874	 33.33	-1	1037002..1037646	+	214	91772956	-	Mbur_0956	-	cobalamin B12-binding protein
875	 41.17	0	1037643..1038689	+	348	91772957	-	Mbur_0957	-	uroporphyrinogen decarboxylase
876	 34.81	-1	1038696..1040387	+	563	91772958	-	Mbur_0958	-	ATP-binding region, ATPase-like protein
877	 37.85	0	1040734..1041420	+	228	91772959	-	Mbur_0959	-	peroxiredoxin
878	 45.18	0	1042532..1043527	-	331	91772960	-	Mbur_0961	-	methyltransferase
879	 45.63	0	1043553..1044170	-	205	91772961	-	Mbur_0962	-	lysine exporter protein LysE/YggA
880	 47.34	+1	1044265..1045278	-	337	91772962	tfb	Mbur_0963	-	transcription initiation factor IIB
881	 35.92	-1	1045348..1045656	-	102	91772963	-	Mbur_0964	-	RNA-binding protein
882	 35.82	-1	1045968..1047092	+	374	91772964	-	Mbur_0965	-	transposase, mutator type
883	 47.01	+1	1047420..1050074	+	884	91772965	-	Mbur_0966	-	pyruvate phosphate dikinase
884	 44.41	0	1050262..1051164	-	300	91772966	-	Mbur_0967	-	cytidine kinase / inosine-guanosine kinase
885	 42.03	0	1051178..1051522	-	114	91772967	-	Mbur_0968	-	hypothetical protein
886	 45.04	0	1051599..1051880	-	93	91772968	-	Mbur_0969	-	hypothetical protein
887	 44.56	0	1051929..1053602	-	557	91772969	-	Mbur_0970	-	hypothetical protein
888	 46.27	0	1053703..1054506	-	267	91772970	-	Mbur_0971	-	diphthine synthase
889	 45.91	0	1054674..1056287	+	537	91772971	-	Mbur_0972	-	chaperonin Cpn60/TCP-1
890	 42.44	0	1056307..1056888	-	193	91772972	-	Mbur_0973	-	hypothetical protein
891	 38.10	0	1057046..1057360	-	104	91772973	-	Mbur_0974	-	Sec-independent protein translocase TatA
892	 31.31	-2	1058199..1058987	+	262	91772974	-	Mbur_0976	-	hypothetical protein
893	 37.43	0	1058990..1059940	+	316	91772975	-	Mbur_0977	-	hypothetical protein
894	 35.42	-1	1059966..1061066	+	366	91772976	-	Mbur_0978	-	hypothetical protein
895	 44.54	0	1061189..1061866	-	225	91772977	-	Mbur_0979	-	RNA-binding S4
896	 45.89	0	1061938..1063020	-	360	91772978	-	Mbur_0980	-	NADH peroxidase
897	 46.89	+1	1063076..1063783	-	235	91772979	-	Mbur_0981	-	ABC heme exporter, inner membrane subunit C
898	 45.33	0	1063847..1064521	-	224	91772980	-	Mbur_0982	-	ABC heme exporter, inner membrane subunit B
899	 42.95	0	1064534..1065334	-	266	91772981	-	Mbur_0983	-	ABC heme exporter, ATPase subunit
900	 36.51	-1	1065616..1066842	+	408	91772982	-	Mbur_0984	-	hypothetical protein
901	 41.27	0	1066858..1068066	+	402	91772983	-	Mbur_0985	-	hypothetical protein
902	 44.06	0	1068068..1068766	+	232	91772984	-	Mbur_0986	-	ABC transporter, ATPase subunit
903	 34.69	-1	1068880..1069173	+	97	91772985	-	Mbur_0987	-	hypothetical protein
904	 29.70	-2	1070009..1070614	-	201	91772986	-	Mbur_0988	-	hypothetical protein
905	 32.30	-2	1070797..1071279	-	160	91772987	-	Mbur_0989	-	hypothetical protein
906	 38.91	0	1071948..1072736	-	262	91772988	-	Mbur_0990	-	metal-dependent phosphohydrolase
907	 44.88	0	1073287..1074195	+	302	91772989	-	Mbur_0991	-	hypothetical protein
908	 40.95	0	1074249..1075154	-	301	91772990	-	Mbur_0992	-	hypothetical protein
909	 46.75	+1	1075381..1075842	+	153	91772991	-	Mbur_0993	-	hypothetical protein
910	 47.45	+1	1076139..1078157	-	672	91772992	hppA	Mbur_0994	-	membrane-bound proton-translocating pyrophosphatase
911	 37.27	-1	1079080..1079562	-	160	91772993	-	Mbur_0996	-	hypothetical protein
912	 38.72	0	1080206..1080706	+	166	91772994	-	Mbur_0997	-	hypothetical protein
913	 40.35	0	1080958..1081299	-	113	91772995	-	Mbur_0998	-	ABC transporter, ATPase subunit
914	 46.41	+1	1081419..1083368	+	649	91772996	-	Mbur_0999	-	acetyl-coenzyme A synthetase
915	 48.77	+1	1083437..1084084	+	215	91772997	-	Mbur_1000	-	orotidine-5'-phosphate decarboxylase
916	 43.69	0	1084155..1085264	+	369	91772998	-	Mbur_1001	-	hypothetical protein
917	 40.12	0	1085419..1086273	+	284	91772999	-	Mbur_1002	-	metal-dependent phosphohydrolase
918	 40.20	0	1086313..1086822	-	169	91773000	-	Mbur_1003	-	hypothetical protein
919	 44.19	0	1087102..1088418	+	438	91773001	-	Mbur_1004	-	hypothetical protein
920	 41.71	0	1088725..1089762	+	345	91773002	-	Mbur_1005	-	methylcobalamin:coenzyme M methyltransferase
921	 41.60	0	1089920..1090282	+	120	91773003	-	Mbur_1006	-	desulfoferrodoxin
922	 44.69	0	1090326..1090871	-	181	91773004	-	Mbur_1007	-	4Fe-4S ferredoxin, iron-sulfur binding
923	 47.22	+1	1091113..1091688	+	191	91773005	-	Mbur_1008	-	PBP family phospholipid-binding protein
924	 47.50	+1	1091712..1092071	-	119	91773006	-	Mbur_1009	-	cupin family protein
925	 47.58	+1	1092061..1092846	-	261	91773007	-	Mbur_1010	-	cobyrinic acid a,c-diamide synthase
926	 42.41	0	1092993..1093862	+	289	91773008	-	Mbur_1011	-	cation diffusion facilitator family transporter
927	 47.32	+1	1093889..1094989	+	366	91773009	-	Mbur_1012	-	chorismate synthase
928	 47.67	+1	1095149..1096306	-	385	91773010	-	Mbur_1013	-	aspartate aminotransferase
929	 43.96	0	1096443..1097270	-	275	91773011	-	Mbur_1014	-	acetolactate decarboxylase
930	 43.52	0	1097573..1098505	+	310	91773012	-	Mbur_1015	-	solute binding protein
931	 47.47	+1	1098518..1099267	+	249	91773013	-	Mbur_1016	-	ABC transporter, ATPase subunit
932	 40.94	0	1099281..1100108	+	275	91773014	-	Mbur_1017	-	ABC transporter, inner membrane subunit
933	 46.11	0	1101185..1102624	+	479	91773015	-	Mbur_1020	-	sodium--dicarboxylate symporter
934	 40.52	0	1103729..1105900	+	723	91773016	-	Mbur_1023	-	Cache sensor signal transduction histidine kinase
935	 40.35	0	1106056..1107951	+	631	91773017	-	Mbur_1024	-	PAS/PAC sensor signal transduction histidine kinase
936	 46.14	0	1108083..1109558	+	491	91773018	-	Mbur_1025	-	argininosuccinate lyase
937	 45.83	0	1109590..1110837	+	415	91773019	-	Mbur_1026	-	glutamyl-tRNA(Gln) amidotransferase subunit D
938	 43.19	0	1110923..1111399	-	158	91773020	-	Mbur_1027	-	hypothetical protein
939	 38.21	0	1111428..1111673	-	81	91773021	-	Mbur_1028	-	hypothetical protein
940	 44.99	0	1111845..1113002	-	385	91773022	purP	Mbur_1029	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
941	 41.51	0	1113101..1113748	-	215	91773023	-	Mbur_1030	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.