IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.89   STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
40	 42.25	0	28589..29440	-	283	91772122	-	Mbur_0041	-	undecaprenyl pyrophosphate synthetase
41	 42.95	0	29584..29895	-	103	91772123	-	Mbur_0042	-	hypothetical protein
42	 43.17	0	30002..31048	-	348	91772124	-	Mbur_0043	-	radical SAM family Fe-S protein
43	 39.58	0	31124..31315	+	63	91772125	-	Mbur_0044	-	4Fe-4S ferredoxin, iron-sulfur binding
44	 40.77	0	32951..33286	-	111	91772126	-	Mbur_0046	-	hypothetical protein
45	 43.88	0	33307..34851	-	514	91772127	-	Mbur_0047	-	type II secretion system protein E
46	 34.97	-1	35190..35618	-	142	91772128	-	Mbur_0048	-	hypothetical protein
47	 43.61	0	35836..37266	-	476	91772129	-	Mbur_0049	-	UDP-glucose/GDP-mannose dehydrogenase
48	 37.86	0	37648..37890	-	80	91772130	-	Mbur_0050	-	hypothetical protein
49	 41.50	0	38209..38661	+	150	91772131	-	Mbur_0051	-	N-acetylglutamate synthase
50	 43.23	0	38736..39665	+	309	91772132	-	Mbur_0052	-	hypothetical protein
51	 44.55	0	39784..40095	-	103	91772133	-	Mbur_0053	-	hypothetical protein
52	 43.29	0	40108..41061	-	317	91772134	-	Mbur_0054	-	GTP cyclohydrolase
53	 44.78	0	41365..41661	+	98	91772135	-	Mbur_0055	-	nucleoid protein MC1
54	 42.73	0	41796..42710	+	304	91772136	-	Mbur_0056	-	acetylglutamate kinase
55	 44.35	0	42736..43779	-	347	91772137	-	Mbur_0057	-	hypothetical protein
56	 46.56	+1	43780..44694	-	304	91772138	-	Mbur_0058	-	GMP synthase subunit B
57	 43.97	0	45035..46369	+	444	91772139	-	Mbur_0059	-	hypothetical protein
58	 42.22	0	46778..48184	+	468	91772140	-	Mbur_0060	-	hypothetical protein
59	 44.50	0	48323..50266	+	647	91772141	-	Mbur_0061	-	ATP-dependent DNA helicase RecQ
60	 42.42	0	50274..51032	-	252	91772142	-	Mbur_0062	-	peptidase A24B, FlaK-like
61	 41.82	0	52556..52885	+	109	91772143	-	Mbur_0064	-	hypothetical protein
62	 44.98	0	52974..53900	+	308	91772144	pyrB	Mbur_0065	-	aspartate carbamoyltransferase catalytic subunit
63	 41.88	0	53897..54376	+	159	91772145	-	Mbur_0066	-	aspartate carbamoyltransferase regulatory subunit
64	 33.44	-1	54490..55398	-	302	91772146	-	Mbur_0067	-	cell surface protein
65	 42.48	0	55818..58265	-	815	91772147	-	Mbur_0068	-	plasma-membrane proton-efflux P-type ATPase
66	 38.10	0	58499..59800	-	433	91772148	-	Mbur_0069	-	amino acid transporter
67	 38.69	0	59813..60652	-	279	91772149	-	Mbur_0070	-	amino acid transporter
68	 32.77	-2	61225..61581	+	118	91772150	-	Mbur_0071	-	hypothetical protein
69	 29.59	-2	61749..62522	-	257	91772151	-	Mbur_0072	-	alpha/beta hydrolase
70	 37.27	-1	62500..63768	-	422	91772152	-	Mbur_0073	-	radical SAM family Fe-S protein
71	 35.51	-1	63798..64532	-	244	91772153	-	Mbur_0074	-	hypothetical protein
72	 41.86	0	65008..66039	+	343	91772154	-	Mbur_0075	-	major facilitator transporter
73	 42.92	0	66015..66233	+	72	91772155	-	Mbur_0076	-	class H tetracycline resistance efflux protein
74	 41.61	0	66303..66785	-	160	91772156	-	Mbur_0077	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
75	 42.06	0	66871..68085	-	404	91772157	-	Mbur_0078	-	hypothetical protein
76	 43.87	0	68101..69315	-	404	91772158	-	Mbur_0079	-	cell division protein FtsX
77	 42.47	0	69320..70567	-	415	91772159	-	Mbur_0080	-	hypothetical protein
78	 43.57	0	70587..71309	-	240	91772160	-	Mbur_0081	-	ABC transporter, ATPase subunit
79	 38.09	0	73103..75394	+	763	91772161	-	Mbur_0083	-	PAS/PAC sensor signal transduction histidine kinase
80	 43.70	0	75833..76459	-	208	91772162	-	Mbur_0084	-	methyltransferase type 11
81	 41.13	0	76519..77262	-	247	91772163	-	Mbur_0085	-	sugar fermentation stimulation protein
82	 38.99	0	77293..77628	-	111	91772164	-	Mbur_0086	-	hypothetical protein
83	 42.72	0	78966..79487	+	173	91772165	-	Mbur_0088	-	hypothetical protein
84	 43.69	0	79634..79855	+	73	91772166	-	Mbur_0089	-	SirA-like protein
85	 43.83	0	79908..80288	+	126	91772167	-	Mbur_0090	-	hypothetical protein
86	 42.59	0	80314..80475	+	53	91772168	-	Mbur_0091	-	rubredoxin-type Fe(Cys)4 protein
87	 45.07	0	80511..82001	+	496	91772169	-	Mbur_0092	-	glutamate synthase (NADPH) GltB2 subunit
88	 44.09	0	82022..82300	+	92	91772170	-	Mbur_0093	-	fumarate hydratase class II
89	 42.17	0	82356..82898	+	180	91772171	-	Mbur_0094	-	succinate dehydrogenase subunit B
90	 44.67	0	83208..85439	+	743	91772172	-	Mbur_0095	-	DNA topoisomerase I
91	 45.79	0	85463..86698	+	411	91772173	-	Mbur_0096	-	beta-lactamase-like
92	 44.14	0	87817..88362	+	181	91772174	-	Mbur_0098	-	hypothetical protein
93	 43.69	0	88414..89301	-	295	91772175	-	Mbur_0099	-	serine/threonine protein kinase
94	 43.00	0	89360..89752	-	130	91772176	-	Mbur_0100	-	hypothetical protein
95	 44.52	0	89814..90734	-	306	91772177	-	Mbur_0101	-	thioredoxin reductase
96	 39.92	0	90747..90989	-	80	91772178	-	Mbur_0102	-	hypothetical protein
97	 40.48	0	91097..92047	-	316	91772179	-	Mbur_0103	-	hypothetical protein
98	 43.21	0	92159..92938	-	259	91772180	-	Mbur_0104	-	flagellin
99	 37.64	0	93332..94120	+	262	91772181	-	Mbur_0105	-	hypothetical protein
100	 38.29	0	94113..94475	+	120	91772182	-	Mbur_0106	-	hypothetical protein
101	 40.81	0	94544..95359	+	271	91772183	-	Mbur_0107	-	indole-3-glycerol phosphate synthase
102	 46.70	+1	95377..96558	+	393	91772184	-	Mbur_0108	-	tryptophan synthase subunit beta
103	 44.23	0	96560..97339	+	259	91772185	trpA	Mbur_0109	-	tryptophan synthase subunit alpha
104	 43.69	0	97382..98482	-	366	91772186	-	Mbur_0110	-	signal recognition particle-docking protein FtsY
105	 48.20	+1	98542..98958	-	138	91772187	-	Mbur_0111	-	prefoldin subunit alpha
106	 40.11	0	98964..99140	-	58	91772188	rplX	Mbur_0112	-	50S ribosomal protein LX
107	 45.72	0	99182..99835	-	217	91772189	-	Mbur_0113	-	translation initiation factor IF-6
108	 44.94	0	99875..100141	-	88	91772190	-	Mbur_0114	-	50S ribosomal protein L31e
109	 44.87	0	100152..100307	-	51	91772191	rpl39e	Mbur_0115	-	50S ribosomal protein L39e
110	 41.92	0	100450..101043	-	197	91772192	-	Mbur_0116	-	ATP-binding protein
111	 47.83	+1	101046..101390	-	114	91772193	-	Mbur_0117	-	hypothetical protein
112	 47.56	+1	101491..101940	-	149	91772194	-	Mbur_0118	-	30S ribosomal protein S19e
113	 45.60	0	102155..103426	-	423	91772195	-	Mbur_0119	-	adenylosuccinate synthetase
114	 41.14	0	103569..104234	+	221	91772196	-	Mbur_0120	-	hexapaptide repeat-containing transferase
115	 44.75	0	104255..105331	+	358	91772197	-	Mbur_0121	-	DegT/DnrJ/EryC1/StrS aminotransferase
116	 42.25	0	105328..106269	+	313	91772198	-	Mbur_0122	-	oxidoreductase-like protein
117	 35.34	-1	106284..106781	-	165	91772199	-	Mbur_0123	-	VanZ like protein
118	 38.23	0	106975..107955	+	326	91772200	-	Mbur_0124	-	glycosyl transferase family protein
119	 40.57	0	107981..109237	-	418	91772201	-	Mbur_0125	-	hypothetical protein
120	 42.89	0	109535..110476	-	313	91772202	-	Mbur_0126	-	TPR repeat-containing protein
121	 40.57	0	111229..111546	+	105	91772203	-	Mbur_0128	-	hypothetical protein
122	 36.82	-1	112306..112821	+	171	91772204	-	Mbur_0129	-	hypothetical protein
123	 45.74	0	113408..114181	-	257	91772205	-	Mbur_0130	-	UBA/THIF-type NAD/FAD binding protein
124	 37.79	0	114393..115334	-	313	91772206	-	Mbur_0131	-	transposase, IS4
125	 46.35	0	115542..117908	+	788	91772207	-	Mbur_0132	-	putative monovalent cation/H+ antiporter subunit A
126	 45.95	0	117908..118327	+	139	91772208	-	Mbur_0133	-	putative monovalent cation/H+ antiporter subunit B
127	 46.34	0	118320..118742	+	140	91772209	-	Mbur_0134	-	putative monovalent cation/H+ antiporter subunit C
128	 46.43	+1	118739..120280	+	513	91772210	-	Mbur_0135	-	putative monovalent cation/H+ antiporter subunit D
129	 40.61	0	120277..120771	+	164	91772211	-	Mbur_0136	-	putative monovalent cation/H+ antiporter subunit E
130	 40.82	0	120768..121034	+	88	91772212	-	Mbur_0137	-	putative monovalent cation/H+ antiporter subunit F
131	 42.82	0	121031..121378	+	115	91772213	-	Mbur_0138	-	putative monovalent cation/H+ antiporter subunit G
132	 43.97	0	121415..122467	+	350	91772214	-	Mbur_0139	-	translation factor SUA5
133	 39.43	0	122475..122720	+	81	91772215	-	Mbur_0140	-	hypothetical protein
134	 47.35	+1	122790..124109	-	439	91772216	-	Mbur_0141	-	signal recognition particle protein Srp54
135	 44.69	0	124585..124998	+	137	91772217	-	Mbur_0142	-	hypothetical protein
136	 37.27	-1	125074..125835	+	253	91772218	-	Mbur_0143	-	hypothetical protein
137	 42.72	0	125849..126913	-	354	91772219	-	Mbur_0144	-	DNA-directed DNA polymerase
138	 40.55	0	127050..127340	+	96	91772220	-	Mbur_0145	-	hypothetical protein
139	 38.97	0	127460..127654	+	64	91772221	rps17E	Mbur_0146	-	30S ribosomal protein S17e
41.89	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.