IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
794	 31.18	-2	919344..919901	+	185	91772876	-	Mbur_0867	-	pentapeptide repeat-containing protein
795	 40.69	0	920037..920267	+	76	91772877	-	Mbur_0868	-	hypothetical protein
796	 34.85	-1	921768..922889	+	373	91772878	-	Mbur_0870	-	transposase, IS4
797	 46.08	0	923158..924255	+	365	91772879	-	Mbur_0871	-	carbamoyl phosphate synthase small subunit
798	 48.57	+1	924255..927482	+	1075	91772880	carB	Mbur_0872	-	carbamoyl phosphate synthase large subunit
799	 50.38	+1	927508..928692	+	394	91772881	-	Mbur_0873	-	argininosuccinate synthase
800	 46.41	+1	930899..931762	+	287	91772882	-	Mbur_0875	-	shikimate kinase
801	 42.36	0	931778..932065	+	95	91772883	-	Mbur_0876	-	chorismate mutase
802	 42.31	0	932078..932467	+	129	91772884	-	Mbur_0877	-	phosphoribosylaminoimidazole carboxylase
803	 38.39	0	932513..933421	-	302	91772885	-	Mbur_0878	-	response regulator receiver
804	 38.61	0	933576..934295	-	239	91772886	-	Mbur_0879	-	KaiC
805	 46.60	+1	934666..936579	+	637	91772887	-	Mbur_0880	-	ATP-dependent protease Lon
806	 44.59	0	936572..937903	+	443	91772888	-	Mbur_0881	-	peptidase U62, modulator of DNA gyrase
807	 41.57	0	937905..939215	+	436	91772889	-	Mbur_0882	-	peptidase U62, modulator of DNA gyrase
808	 38.69	0	939393..940214	+	273	91772890	-	Mbur_0883	-	response regulator receiver
809	 38.96	0	940275..947933	-	2552	91772891	-	Mbur_0884	-	KP-43 peptidase
810	 41.97	0	948195..950858	+	887	91772892	-	Mbur_0885	-	cation transporting P-type ATPase
811	 42.58	0	951053..951679	-	208	91772893	-	Mbur_0886	-	hypothetical protein
812	 38.35	0	952359..953255	+	298	91772894	-	Mbur_0887	-	hypothetical protein
813	 41.20	0	953362..954009	+	215	91772895	-	Mbur_0888	-	lysine exporter protein LysE/YggA
814	 44.21	0	954037..954891	-	284	91772896	-	Mbur_0889	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
815	 44.87	0	954893..956617	-	574	91772897	-	Mbur_0890	-	pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
816	 44.89	0	956662..957033	-	123	91772898	-	Mbur_0891	-	glyoxalase/bleomycin resistance protein/dioxygenase
817	 34.33	-1	958383..959381	-	332	91772899	-	Mbur_0893	-	hypothetical protein
818	 32.48	-2	960495..961664	+	389	91772900	-	Mbur_0894	-	hypothetical protein
819	 33.08	-1	961654..962856	+	400	91772901	-	Mbur_0895	-	hypothetical protein
820	 34.35	-1	962859..963548	+	229	91772902	-	Mbur_0896	-	ABC transporter, ATPase subunit
821	 32.90	-1	964584..964814	+	76	91772903	-	Mbur_0898	-	hypothetical protein
822	 44.51	0	965594..967525	-	643	91772904	-	Mbur_0899	-	hydantoinase/oxoprolinase
823	 43.67	0	967767..969692	-	641	91772905	-	Mbur_0900	-	hydantoinase/oxoprolinase
824	 46.31	0	969843..970451	-	202	91772906	-	Mbur_0901	-	putative methylase
825	 41.94	0	970456..971268	-	270	91772907	ksgA	Mbur_0902	-	dimethyladenosine transferase
826	 44.05	0	971287..971883	-	198	91772908	-	Mbur_0903	-	hypothetical protein
827	 41.28	0	971962..972351	-	129	91772909	-	Mbur_0904	-	DNA-directed RNA polymerase, subunit F
828	 45.92	0	972466..972759	-	97	91772910	-	Mbur_0905	-	50S ribosomal protein L21e
829	 48.33	+1	972825..974111	-	428	91772911	-	Mbur_0906	-	hypothetical protein
830	 45.16	0	974141..974749	-	202	91772912	-	Mbur_0907	-	hypothetical protein
831	 42.69	0	975791..976303	+	170	91772913	-	Mbur_0910	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
832	 44.31	0	976788..977990	+	400	91772914	-	Mbur_0911	-	hypothetical protein
833	 37.69	0	978235..979176	-	313	91772915	-	Mbur_0912	-	transposase, IS4
834	 40.02	0	979255..982230	+	991	91772916	-	Mbur_0913	-	multisensor signal transduction histidine kinase
835	 37.11	-1	983809..985290	-	493	91772917	-	Mbur_0915	-	transposase
836	 46.59	+1	985901..986692	+	263	91772918	-	Mbur_0917	-	fructose-bisphosphate aldolase
837	 37.58	0	987189..988130	+	313	91772919	-	Mbur_0918	-	transposase, IS4
838	 47.54	+1	989375..991120	+	581	91772920	-	Mbur_0919	-	glycyl-tRNA synthetase
839	 44.68	0	991167..993476	+	769	91772921	-	Mbur_0920	-	Hef nuclease
840	 43.82	0	993548..994024	-	158	91772922	-	Mbur_0921	-	hypothetical protein
841	 41.30	0	994138..994413	+	91	91772923	-	Mbur_0922	-	hypothetical protein
842	 45.56	0	994630..996249	+	539	91772924	-	Mbur_0923	-	O-phosphoseryl-tRNA synthetase
843	 43.85	0	996270..996887	+	205	91772925	-	Mbur_0924	-	hypothetical protein
844	 42.05	0	996889..997278	-	129	91772926	-	Mbur_0925	-	hypothetical protein
845	 42.57	0	997285..998031	-	248	91772927	-	Mbur_0926	-	hypothetical protein
846	 44.28	0	998202..998795	+	197	91772928	-	Mbur_0927	-	hypothetical protein
847	 40.44	0	998836..999060	-	74	91772929	-	Mbur_0928	-	hypothetical protein
848	 46.84	+1	999097..999918	-	273	91772930	-	Mbur_0929	-	F420-dependent methylenetetrahydromethanopterin dehydrogenase
849	 42.36	0	1000459..1002198	-	579	91772931	-	Mbur_0930	-	hypothetical protein
850	 32.03	-2	1002511..1002969	+	152	91772932	-	Mbur_0931	-	hypothetical protein
851	 46.45	+1	1003987..1004619	+	210	91772933	-	Mbur_0933	-	Rh-like protein/ammonium transporter
852	 42.34	0	1004719..1005051	+	110	91772934	-	Mbur_0934	-	nitrogen regulatory protein P-II
853	 41.19	0	1005308..1005982	+	224	91772935	-	Mbur_0935	-	phosphoserine phosphatase
854	 44.06	0	1006054..1006911	+	285	91772936	-	Mbur_0936	-	phosphoserine phosphatase
855	 39.15	0	1007099..1011154	-	1351	91772937	-	Mbur_0937	-	KP-43 peptidase
856	 42.93	0	1011343..1012488	-	381	91772938	-	Mbur_0938	-	radical SAM family Fe-S protein
857	 44.91	0	1012493..1013650	-	385	91772939	-	Mbur_0939	-	FAD dependent oxidoreductase
858	 45.54	0	1013666..1014607	-	313	91772940	-	Mbur_0940	-	UbiA prenyltransferase
859	 44.77	0	1014662..1016113	-	483	91772941	-	Mbur_0941	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
860	 39.90	0	1016214..1016594	-	126	91772942	-	Mbur_0942	-	hypothetical protein
861	 35.90	-1	1016612..1016845	-	77	91772943	-	Mbur_0943	-	redox-active disulfide protein 2
862	 39.85	0	1016884..1017927	-	347	91772944	-	Mbur_0944	-	transporter
863	 35.20	-1	1024064..1025185	-	373	91772945	-	Mbur_0945	-	transposase, IS4
864	 37.02	-1	1025554..1026069	+	171	91772946	-	Mbur_0946	-	ArsR family transcriptional regulator
865	 39.62	0	1026281..1027075	+	264	91772947	-	Mbur_0947	-	protein of unknown function RIO1
866	 43.02	0	1027117..1027653	+	178	91772948	-	Mbur_0948	-	putative RNA-processing protein
867	 34.80	-1	1027721..1028128	+	135	91772949	-	Mbur_0949	-	beta-Ig-H3/fasciclin
868	 38.20	0	1028131..1029321	-	396	91772950	-	Mbur_0950	-	PAS/PAC sensor signal transduction histidine kinase
869	 37.89	0	1029379..1030080	-	233	91772951	-	Mbur_0951	-	hypothetical protein
870	 45.81	0	1030343..1031440	-	365	91772952	-	Mbur_0952	-	hypothetical protein
871	 47.23	+1	1031441..1032865	-	474	91772953	-	Mbur_0953	-	FAD linked oxidase-like protein
872	 45.08	0	1032878..1034128	-	416	91772954	-	Mbur_0954	-	hypothetical protein
873	 33.20	-1	1034571..1036868	+	765	91772955	-	Mbur_0955	-	PAS/PAC sensor signal transduction histidine kinase
874	 33.33	-1	1037002..1037646	+	214	91772956	-	Mbur_0956	-	cobalamin B12-binding protein
875	 41.17	0	1037643..1038689	+	348	91772957	-	Mbur_0957	-	uroporphyrinogen decarboxylase
876	 34.81	-1	1038696..1040387	+	563	91772958	-	Mbur_0958	-	ATP-binding region, ATPase-like protein
877	 37.85	0	1040734..1041420	+	228	91772959	-	Mbur_0959	-	peroxiredoxin
878	 45.18	0	1042532..1043527	-	331	91772960	-	Mbur_0961	-	methyltransferase
879	 45.63	0	1043553..1044170	-	205	91772961	-	Mbur_0962	-	lysine exporter protein LysE/YggA
880	 47.34	+1	1044265..1045278	-	337	91772962	tfb	Mbur_0963	-	transcription initiation factor IIB
881	 35.92	-1	1045348..1045656	-	102	91772963	-	Mbur_0964	-	RNA-binding protein
882	 35.82	-1	1045968..1047092	+	374	91772964	-	Mbur_0965	-	transposase, mutator type
883	 47.01	+1	1047420..1050074	+	884	91772965	-	Mbur_0966	-	pyruvate phosphate dikinase
884	 44.41	0	1050262..1051164	-	300	91772966	-	Mbur_0967	-	cytidine kinase / inosine-guanosine kinase
885	 42.03	0	1051178..1051522	-	114	91772967	-	Mbur_0968	-	hypothetical protein
886	 45.04	0	1051599..1051880	-	93	91772968	-	Mbur_0969	-	hypothetical protein
887	 44.56	0	1051929..1053602	-	557	91772969	-	Mbur_0970	-	hypothetical protein
888	 46.27	0	1053703..1054506	-	267	91772970	-	Mbur_0971	-	diphthine synthase
889	 45.91	0	1054674..1056287	+	537	91772971	-	Mbur_0972	-	chaperonin Cpn60/TCP-1
890	 42.44	0	1056307..1056888	-	193	91772972	-	Mbur_0973	-	hypothetical protein
891	 38.10	0	1057046..1057360	-	104	91772973	-	Mbur_0974	-	Sec-independent protein translocase TatA
892	 31.31	-2	1058199..1058987	+	262	91772974	-	Mbur_0976	-	hypothetical protein
893	 37.43	0	1058990..1059940	+	316	91772975	-	Mbur_0977	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.