IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
594	 33.66	-1	665451..666371	+	306	91772676	-	Mbur_0647	-	MscS mechanosensitive ion channel
595	 37.11	-1	666813..668294	-	493	91772677	-	Mbur_0648	-	transposase
596	 41.75	0	668513..669094	-	193	91772678	-	Mbur_0649	-	hypothetical protein
597	 40.90	0	669296..670009	-	237	91772679	-	Mbur_0650	-	oxidoreductase, molybdopterin binding
598	 36.87	-1	670317..670712	+	131	91772680	-	Mbur_0651	-	methyltransferase
599	 40.95	0	670823..671137	+	104	91772681	-	Mbur_0652	-	hypothetical protein
600	 44.65	0	671296..672258	+	320	91772682	-	Mbur_0653	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
601	 41.14	0	672317..672790	+	157	91772683	-	Mbur_0654	-	hypothetical protein
602	 42.01	0	672897..673910	-	337	91772684	-	Mbur_0655	-	methyltransferase
603	 38.64	0	674134..674868	+	244	91772685	-	Mbur_0656	-	4-vinyl reductase, 4VR
604	 44.06	0	675006..675695	-	229	91772686	-	Mbur_0657	-	hypothetical protein
605	 40.54	0	675720..676274	-	184	91772687	-	Mbur_0658	-	MarR family transcriptional regulator
606	 44.39	0	676430..677596	-	388	91772688	-	Mbur_0659	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
607	 39.57	0	677621..678085	-	154	91772689	-	Mbur_0660	-	hypothetical protein
608	 44.73	0	678231..678809	+	192	91772690	-	Mbur_0661	-	MerR family transcriptional regulator
609	 42.51	0	678820..679233	+	137	91772691	-	Mbur_0662	-	thioesterase superfamily protein
610	 42.82	0	679250..680893	+	547	91772692	-	Mbur_0663	-	acyl-CoA synthetase
611	 34.33	-1	681786..682994	+	402	91772693	-	Mbur_0665	-	transposase, IS204/IS1001/IS1096/IS1165
612	 45.07	0	683725..686076	-	783	91772694	-	Mbur_0667	-	hypothetical protein
613	 37.32	-1	686248..687174	-	308	91772695	-	Mbur_0668	-	hypothetical protein
614	 36.37	-1	687318..689030	-	570	91772696	-	Mbur_0669	-	cell surfacr protein
615	 44.32	0	689034..689306	-	90	91772697	-	Mbur_0670	-	hypothetical protein
616	 37.65	0	689571..690776	-	401	91772698	-	Mbur_0671	-	hypothetical protein
617	 47.35	+1	690791..691375	-	194	91772699	-	Mbur_0672	-	hypothetical protein
618	 45.37	0	691429..692724	-	431	91772700	-	Mbur_0673	-	hypothetical protein
619	 48.56	+1	693865..694836	+	323	91772701	-	Mbur_0675	-	HEAT repeat-containing PBS lyase
620	 47.67	+1	694833..696032	+	399	91772702	-	Mbur_0676	-	hypothetical protein
621	 34.66	-1	697469..697921	+	150	91772703	-	Mbur_0678	-	hypothetical protein
622	 44.06	0	699277..701001	+	574	91772704	-	Mbur_0680	-	thiamine pyrophosphate requiring enzyme
623	 46.61	+1	702322..703074	+	250	91772705	-	Mbur_0681	-	beta-lactamase-like protein
624	 42.35	0	703120..703773	-	217	91772706	-	Mbur_0682	-	metallophosphoesterase
625	 47.56	+1	703796..704575	-	259	91772707	-	Mbur_0683	-	hypothetical protein
626	 43.54	0	704849..705181	+	110	91772708	-	Mbur_0684	-	protein of unknown function DUF306, Meta and HslJ
627	 41.20	0	705481..705963	+	160	91772709	-	Mbur_0685	-	hypothetical protein
628	 44.59	0	705960..706865	+	301	91772710	-	Mbur_0686	-	SSU ribosomal protein S6P modification protein
629	 44.22	0	706869..707915	+	348	91772711	-	Mbur_0687	-	succinylglutamate desuccinylase/aspartoacylase
630	 38.01	0	708100..709125	+	341	91772712	-	Mbur_0688	-	hypothetical protein
631	 32.47	-2	709180..709410	-	76	91772713	-	Mbur_0689	-	transposase
632	 34.60	-1	709600..711330	-	576	91772714	-	Mbur_0690	-	RNA-directed DNA polymerase
633	 41.59	0	713708..714361	+	217	91772715	-	Mbur_0692	-	hypothetical protein
634	 40.17	0	715198..715665	-	155	91772716	-	Mbur_0693	-	hypothetical protein
635	 42.38	0	715675..717453	-	592	91772717	-	Mbur_0694	-	external sensor signal transduction histidine kinase
636	 43.47	0	717487..717999	-	170	91772718	-	Mbur_0695	-	response regulator receiver
637	 42.55	0	718149..718430	+	93	91772719	-	Mbur_0696	-	hypothetical protein
638	 38.89	0	718494..719249	-	251	91772720	-	Mbur_0697	-	hypothetical protein
639	 36.89	-1	719309..719533	-	74	91772721	-	Mbur_0698	-	hypothetical protein
640	 44.03	0	719570..720784	-	404	91772722	-	Mbur_0699	-	hypothetical protein
641	 41.02	0	720820..722055	-	411	91772723	-	Mbur_0700	-	hypothetical protein
642	 42.84	0	722065..722790	-	241	91772724	-	Mbur_0701	-	ABC transporter, ATPase subunit
643	 33.81	-1	722964..724226	+	420	91772725	-	Mbur_0702	-	proteinase inhibitor I4, serpin
644	 47.29	+1	724470..725759	-	429	91772726	-	Mbur_0703	-	thiamine biosynthesis protein ThiC
645	 44.30	0	725973..726419	+	148	91772727	-	Mbur_0704	-	hypothetical protein
646	 46.65	+1	726570..728912	+	780	91772728	-	Mbur_0705	-	DNA topoisomerase
647	 30.20	-2	729028..729666	-	212	91772729	-	Mbur_0706	-	hypothetical protein
648	 42.32	0	730370..730903	-	177	91772730	-	Mbur_0707	-	nitroreductase
649	 49.11	+1	730975..731982	-	335	91772731	-	Mbur_0708	-	ketol-acid reductoisomerase
650	 44.65	0	732026..732511	-	161	91772732	ilvH	Mbur_0709	-	acetolactate synthase 3 regulatory subunit
651	 46.34	0	732508..734199	-	563	91772733	-	Mbur_0710	-	acetolactate synthase 3 catalytic subunit
652	 47.05	+1	734346..735803	-	485	91772734	-	Mbur_0711	-	(R)-citramalate synthase
653	 47.10	+1	736342..737394	-	350	91772735	-	Mbur_0712	-	cellulase
654	 28.86	-2	737510..738046	-	178	91772736	-	Mbur_0713	-	hypothetical protein
655	 42.26	0	738138..738641	-	167	91772737	-	Mbur_0714	-	hypothetical protein
656	 39.87	0	738836..741160	-	774	91772738	-	Mbur_0715	-	hypothetical protein
657	 42.05	0	741799..742590	+	263	91772739	-	Mbur_0716	-	protease HtpX-like protein
658	 42.45	0	742834..743667	-	277	91772740	-	Mbur_0717	-	hypothetical protein
659	 42.07	0	743949..744749	+	266	91772741	-	Mbur_0718	-	hypothetical protein
660	 42.42	0	744765..745766	+	333	91772742	-	Mbur_0719	-	hypothetical protein
661	 33.91	-1	745810..746844	+	344	91772743	-	Mbur_0720	-	hypothetical protein
662	 32.89	-1	746891..747340	+	149	91772744	-	Mbur_0721	-	galactoside-O-acetyltransferase
663	 34.01	-1	747446..748330	+	294	91772745	-	Mbur_0722	-	glycosyl transferase family protein
664	 30.89	-2	748308..749861	+	517	91772746	-	Mbur_0723	-	hypothetical protein
665	 27.42	-2	749867..750982	+	371	91772747	-	Mbur_0724	-	glycosyl transferase, group 1
666	 27.78	-2	751010..752143	+	377	91772748	-	Mbur_0725	-	glycosyl transferase, group 1
667	 30.21	-2	752288..753409	+	373	91772749	-	Mbur_0726	-	glycosyl transferase, group 1
668	 29.99	-2	753424..754860	+	478	91772750	-	Mbur_0727	-	polysaccharide biosynthesis protein
669	 38.12	0	755888..759268	+	1126	91772751	-	Mbur_0728	-	putative Ig
670	 41.12	0	759597..760277	+	226	91772752	-	Mbur_0729	-	cellulosome anchoring protein
671	 44.36	0	760824..761222	+	132	91772753	-	Mbur_0730	-	hypothetical protein
672	 45.37	0	761225..762088	+	287	91772754	-	Mbur_0731	-	putative phosphoesterase
673	 47.65	+1	762085..764919	+	944	91772755	-	Mbur_0732	-	DEAD/DEAH box helicase-like protein
674	 44.67	0	764973..766727	+	584	91772756	-	Mbur_0733	-	adenine deaminase
675	 42.08	0	766871..768094	-	407	91772757	-	Mbur_0734	-	glucoamylase and related glycosyl hydrolases
676	 43.50	0	768100..768630	-	176	91772758	-	Mbur_0735	-	hypothetical protein
677	 42.25	0	768661..769479	-	272	91772759	-	Mbur_0736	-	mannosyl-3-phosphoglycerate phosphatase
678	 42.06	0	769717..770931	+	404	91772760	-	Mbur_0737	-	hypothetical protein
679	 35.17	-1	771291..772214	+	307	91772761	-	Mbur_0738	-	transposase, IS4
680	 31.28	-2	774889..775278	+	129	91772762	-	Mbur_0741	-	hypothetical protein
681	 35.06	-1	775372..775833	+	153	91772763	-	Mbur_0742	-	hypothetical protein
682	 37.11	-1	776842..778323	+	493	91772764	-	Mbur_0744	-	transposase
683	 39.16	0	778603..778911	+	102	91772765	-	Mbur_0745	-	hypothetical protein
684	 37.16	-1	779844..780470	-	208	91772766	-	Mbur_0747	-	hypothetical protein
685	 42.09	0	781083..781733	-	216	91772767	-	Mbur_0748	-	phosphate uptake regulator, PhoU
686	 41.93	0	781738..782505	-	255	91772768	-	Mbur_0749	-	ABC phosphate transporter, ATPase subunit
687	 46.81	+1	782528..783388	-	286	91772769	-	Mbur_0750	-	ABC phosphate transporter, inner membrane subunit
688	 43.62	0	783385..784278	-	297	91772770	-	Mbur_0751	-	phosphate ABC transporter inner membrane protein
689	 46.97	+1	784314..785171	-	285	91772771	-	Mbur_0752	-	phosphate ABC transporter phosphate-binding protein
690	 32.44	-2	785851..787635	+	594	91772772	-	Mbur_0753	-	ATP-dependent OLD family endonuclease
691	 33.16	-1	787638..789401	+	587	91772773	-	Mbur_0754	-	ATP-dependent DNA helicase Rep
692	 43.46	0	789591..790163	-	190	91772774	-	Mbur_0755	-	GPR1/FUN34/yaaH
693	 37.58	0	790334..791275	+	313	91772775	-	Mbur_0756	-	transposase, IS4
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.