IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
491	 47.46	+1	539655..541190	+	511	91772573	-	Mbur_0537	-	thiamine pyrophosphate enzyme-like TPP-binding
492	 36.84	-1	542518..543687	+	389	91772574	-	Mbur_0539	-	transposase
493	 36.11	-1	543924..544103	+	59	91772575	-	Mbur_0540	-	hypothetical protein
494	 35.86	-1	544093..544647	-	184	91772576	-	Mbur_0541	-	hypothetical protein
495	 37.08	-1	544640..544879	-	79	91772577	-	Mbur_0542	-	hypothetical protein
496	 40.20	0	545211..547322	-	703	91772578	-	Mbur_0543	-	hypothetical protein
497	 39.73	0	551107..551622	-	171	91772579	-	Mbur_0544	-	hypothetical protein
498	 37.38	0	551738..552058	+	106	91772580	-	Mbur_0545	-	hypothetical protein
499	 45.77	0	552087..552488	+	133	91772581	-	Mbur_0546	-	hypothetical protein
500	 40.76	0	553655..554314	-	219	91772582	-	Mbur_0547	-	K+ transport systems NAD-binding subunit
501	 42.39	0	554311..555768	-	485	91772583	-	Mbur_0548	-	Trk-type K+ transport systems membrane subunit
502	 42.27	0	558302..558592	+	96	91772584	-	Mbur_0551	-	hypothetical protein
503	 49.68	+1	558693..561053	+	786	91772585	-	Mbur_0552	-	CoB--CoM heterodisulfide reductase subunit A
504	 46.91	+1	561046..562356	+	436	91772586	-	Mbur_0553	-	formylmethanofuran dehydrogenase, subunit F
505	 31.17	-2	562442..562765	-	107	91772587	-	Mbur_0554	-	hypothetical protein
506	 34.88	-1	563335..564108	+	257	91772588	-	Mbur_0555	-	hypothetical protein
507	 40.36	0	564493..564990	+	165	91772589	-	Mbur_0556	-	hypothetical protein
508	 41.60	0	565256..565642	+	128	91772590	-	Mbur_0557	-	resolvase-like protein
509	 47.19	+1	565623..565889	+	88	91772591	-	Mbur_0558	-	hypothetical protein
510	 28.09	-2	566223..566927	+	234	91772592	-	Mbur_0559	-	hypothetical protein
511	 37.55	0	566998..568206	-	402	91772593	-	Mbur_0560	-	CRISPR-associated Cas1 family protein
512	 31.28	-2	568206..569324	-	372	91772594	-	Mbur_0561	-	hypothetical protein
513	 35.21	-1	569532..570170	+	212	91772595	-	Mbur_0562	-	hypothetical protein
514	 34.23	-1	570187..570519	+	110	91772596	-	Mbur_0563	-	hypothetical protein
515	 33.48	-1	570512..573184	+	890	91772597	-	Mbur_0564	-	DNA-directed DNA polymerase B
516	 27.66	-2	573210..574178	-	322	91772598	-	Mbur_0565	-	hypothetical protein
517	 37.79	0	574540..575481	+	313	91772599	-	Mbur_0566	-	transposase, IS4
518	 37.79	0	575915..576856	+	313	91772600	-	Mbur_0567	-	transposase, IS4
519	 35.36	-1	578143..580812	-	889	91772601	-	Mbur_0569	-	DNA-directed DNA polymerase B
520	 34.83	-1	580805..581137	-	110	91772602	-	Mbur_0570	-	hypothetical protein
521	 38.94	0	581150..581791	-	213	91772603	-	Mbur_0571	-	hypothetical protein
522	 31.11	-2	582060..582959	+	299	91772604	-	Mbur_0572	-	hypothetical protein
523	 37.43	0	582959..584155	+	398	91772605	-	Mbur_0573	-	CRISPR-associated Cas1 family protein
524	 33.33	-1	584257..584760	+	167	91772606	-	Mbur_0574	-	hypothetical protein
525	 31.74	-2	584836..585336	+	166	91772607	-	Mbur_0575	-	hypothetical protein
526	 28.06	-2	585575..586864	+	429	91772608	-	Mbur_0576	-	hypothetical protein
527	 33.09	-1	586871..589345	-	824	91772609	-	Mbur_0577	-	DNA-directed DNA polymerase B
528	 32.79	-2	589361..589543	-	60	91772610	-	Mbur_0578	-	hypothetical protein
529	 29.82	-2	589728..589955	-	75	91772611	-	Mbur_0579	-	hypothetical protein
530	 32.71	-2	589948..590586	-	212	91772612	-	Mbur_0580	-	hypothetical protein
531	 36.15	-1	591703..592908	+	401	91772613	-	Mbur_0582	-	CRISPR-associated Cas1 family protein
532	 41.28	0	592968..593747	-	259	91772614	-	Mbur_0583	-	hypothetical protein
533	 37.79	0	594187..595128	-	313	91772615	-	Mbur_0584	-	transposase, IS4
534	 34.95	-1	596233..597342	+	369	91772616	-	Mbur_0585	-	transposase, IS4
535	 43.46	0	597494..597898	+	134	91772617	-	Mbur_0586	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
536	 43.30	0	598004..598264	-	86	91772618	-	Mbur_0587	-	hypothetical protein
537	 40.03	0	599785..600366	+	193	91772619	-	Mbur_0590	-	DNA-3-methyladenine glycosylase I
538	 34.78	-1	600425..600562	-	45	91772620	-	Mbur_0591	-	hypothetical protein
539	 38.57	0	600697..601422	-	241	91772621	-	Mbur_0592	-	hypothetical protein
540	 42.41	0	602025..604790	+	921	91772622	-	Mbur_0593	-	CRISPR-associated helicase Cas3
541	 41.21	0	604805..606391	+	528	91772623	-	Mbur_0594	-	hypothetical protein
542	 41.20	0	606512..606943	+	143	91772624	-	Mbur_0595	-	hypothetical protein
543	 44.20	0	606965..608068	+	367	91772625	-	Mbur_0596	-	CRISPR-associated Cse4 family protein
544	 42.86	0	608089..608823	+	244	91772626	-	Mbur_0597	-	CRISPR-associated Cas5e family protein
545	 40.74	0	608833..609507	+	224	91772627	-	Mbur_0598	-	CRISPR-associated Cse3 family protein
546	 45.07	0	609520..610431	+	303	91772628	-	Mbur_0599	-	CRISPR-associated Cas1 family protein
547	 42.91	0	610412..610693	+	93	91772629	-	Mbur_0600	-	hypothetical protein
548	 40.83	0	615138..615524	+	128	91772630	-	Mbur_0601	-	hypothetical protein
549	 44.54	0	615605..616960	-	451	91772631	-	Mbur_0602	-	coenzyme F390 synthetase
550	 38.06	0	616974..618623	-	549	91772632	-	Mbur_0603	-	unusual protein kinase
551	 41.67	0	618895..619098	-	67	91772633	-	Mbur_0604	-	hypothetical protein
552	 47.35	+1	619816..621249	-	477	91772634	-	Mbur_0605	-	ketoisovalerate ferredoxin oxidoreductase, gamma subunit / ketoisovalerate ferredoxin oxidoreductase, beta subunit
553	 44.92	0	621252..622313	-	353	91772635	-	Mbur_0606	-	2-ketoisovalerate ferredoxin reductase
554	 42.79	0	622336..622557	-	73	91772636	-	Mbur_0607	-	ketoisovalerate ferredoxin oxidoreductase, delta subunit
555	 44.92	0	622766..624370	-	534	91772637	-	Mbur_0608	-	AMP-dependent synthetase and ligase
556	 43.24	0	624423..624977	-	184	91772638	-	Mbur_0609	-	cupin sensor transcriptional regulator
557	 43.25	0	625152..626543	-	463	91772639	-	Mbur_0610	-	hypothetical protein
558	 38.51	0	627708..628190	+	160	91772640	-	Mbur_0611	-	hypothetical protein
559	 47.61	+1	628292..631120	-	942	91772641	-	Mbur_0612	-	copper-translocating P-type ATPase
560	 42.16	0	631206..631409	-	67	91772642	-	Mbur_0613	-	heavy metal transport/detoxification protein
561	 44.19	0	631644..632564	+	306	91772643	-	Mbur_0614	-	quinolinate synthetase
562	 43.07	0	632604..633476	-	290	91772644	-	Mbur_0615	-	cobyrinic acid a,c-diamide synthase
563	 46.25	0	633512..633844	-	110	91772645	-	Mbur_0616	-	hypothetical protein
564	 44.80	0	633863..634717	-	284	91772646	-	Mbur_0617	-	cobyrinic acid a,c-diamide synthase
565	 43.12	0	634746..635981	-	411	91772647	-	Mbur_0618	-	cation diffusion facilitator family transporter
566	 45.89	0	636045..637964	-	639	91772648	-	Mbur_0619	-	nitrite and sulphite reductase
567	 47.31	+1	638000..638371	-	123	91772649	-	Mbur_0620	-	dinitrogenase iron-molybdenum cofactor biosynthesis
568	 52.16	+2	638395..638856	-	153	91772650	-	Mbur_0621	-	dinitrogenase iron-molybdenum cofactor biosynthesis
569	 43.59	0	639035..639736	+	233	91772651	-	Mbur_0622	-	hypothetical protein
570	 41.67	0	640046..640453	-	135	91772652	-	Mbur_0623	-	JAMM-like protein. metallo peptidase. MEROPS family M67B
571	 33.33	-1	640468..640872	-	134	91772653	-	Mbur_0624	-	hypothetical protein
572	 29.77	-2	640994..642142	+	382	91772654	-	Mbur_0625	-	transposase
573	 40.98	0	642242..643654	-	470	91772655	-	Mbur_0626	-	hypothetical protein
574	 39.97	0	643708..644445	-	245	91772656	-	Mbur_0627	-	silent information regulator protein Sir2
575	 41.81	0	644640..645902	+	420	91772657	-	Mbur_0628	-	diaminopimelate decarboxylase
576	 39.21	0	646027..649176	-	1049	91772658	-	Mbur_0629	-	TPR repeat-containing protein
577	 41.08	0	649391..649687	-	98	91772659	-	Mbur_0630	-	alkylhydroperoxidase-like protein
578	 34.40	-1	649907..650188	-	93	91772660	-	Mbur_0631	-	hypothetical protein
579	 33.08	-1	650185..650961	-	258	91772661	-	Mbur_0632	-	hypothetical protein
580	 43.21	0	651053..651811	+	252	91772662	-	Mbur_0633	-	ABC transporter, ATPase subunit
581	 38.89	0	651808..653067	+	419	91772663	-	Mbur_0634	-	hypothetical protein
582	 41.06	0	653094..654401	+	435	91772664	-	Mbur_0635	-	ABC transporter, inner membrane subunit
583	 42.27	0	654830..655243	-	137	91772665	-	Mbur_0636	-	hypothetical protein
584	 35.91	-1	655433..656557	-	374	91772666	-	Mbur_0637	-	transposase, mutator type
585	 34.04	-1	657369..658493	-	374	91772667	-	Mbur_0638	-	transposase
586	 38.58	0	658646..660016	+	456	91772668	-	Mbur_0639	-	PAS/PAC sensor signal transduction histidine kinase
587	 34.65	-1	660244..660546	+	100	91772669	-	Mbur_0640	-	hypothetical protein
588	 30.62	-2	660553..660810	+	85	91772670	-	Mbur_0641	-	hypothetical protein
589	 28.75	-2	660917..661156	+	79	91772671	-	Mbur_0642	-	hypothetical protein
590	 43.15	0	661620..662006	-	128	91772672	-	Mbur_0643	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.