IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
463	 35.93	-1	499489..500334	-	281	91772545	-	Mbur_0504	-	metallophosphoesterase
464	 44.21	0	500775..501896	+	373	91772546	-	Mbur_0505	-	hypothetical protein
465	 42.70	0	503488..504939	-	483	91772547	-	Mbur_0507	-	divergent AAA ATPase
466	 41.86	0	504936..506471	-	511	91772548	-	Mbur_0508	-	restriction modification system DNA specificity subunit
467	 47.26	+1	506614..509370	-	918	91772549	-	Mbur_0509	-	type III restriction enzyme, res subunit
468	 42.59	0	509531..511432	-	633	91772550	-	Mbur_0510	-	Cache sensor signal transduction histidine kinase
469	 37.91	0	511788..511940	+	50	91772551	-	Mbur_0511	-	response regulator
470	 43.19	0	512008..512565	+	185	91772552	-	Mbur_0512	-	XRE family transcriptional regulator
471	 40.66	0	512804..513826	+	340	91772553	-	Mbur_0513	-	hypothetical protein
472	 48.82	+1	514158..515300	+	380	91772554	-	Mbur_0514	-	phosphoserine aminotransferase / L-aspartate aminotransferase
473	 48.60	+1	515316..515780	+	154	91772555	-	Mbur_0515	-	riboflavin synthase
474	 42.14	0	515924..516559	-	211	91772556	-	Mbur_0516	-	hypothetical protein
475	 40.77	0	516836..517198	+	120	91772557	-	Mbur_0517	-	hypothetical protein
476	 31.21	-2	517464..518450	-	328	91772558	-	Mbur_0518	-	hypothetical protein
477	 33.87	-1	519047..519421	+	124	91772559	-	Mbur_0519	-	hypothetical protein
478	 34.60	-1	519957..520745	+	262	91772560	-	Mbur_0520	-	hypothetical protein
479	 38.31	0	520717..520917	-	66	91772561	-	Mbur_0521	-	hypothetical protein
480	 44.15	0	521164..521616	+	150	91772562	-	Mbur_0522	-	hypothetical protein
481	 44.75	0	521831..523345	-	504	91772563	-	Mbur_0523	-	catalase
482	 44.06	0	523731..524588	-	285	91772564	-	Mbur_0524	-	hypothetical protein
483	 44.17	0	526405..528342	+	645	91772565	-	Mbur_0526	-	glycoside hydrolase 15-related
484	 38.18	0	528795..529433	+	212	91772566	-	Mbur_0527	-	multiple antibiotic resistance (MarC)-related proteins
485	 31.60	-2	530827..532095	+	422	91772567	-	Mbur_0529	-	proteinase inhibitor I4, serpin
486	 33.83	-1	534399..535607	+	402	91772568	-	Mbur_0532	-	hypothetical protein
487	 31.73	-2	535635..536195	+	186	91772569	-	Mbur_0533	-	hypothetical protein
488	 34.37	-1	536849..537235	+	128	91772570	-	Mbur_0534	-	hypothetical protein
489	 35.29	-1	537465..538586	-	373	91772571	-	Mbur_0535	-	transposase, IS4
490	 49.83	+1	538750..539658	+	302	91772572	-	Mbur_0536	-	hypothetical protein
491	 47.46	+1	539655..541190	+	511	91772573	-	Mbur_0537	-	thiamine pyrophosphate enzyme-like TPP-binding
492	 36.84	-1	542518..543687	+	389	91772574	-	Mbur_0539	-	transposase
493	 36.11	-1	543924..544103	+	59	91772575	-	Mbur_0540	-	hypothetical protein
494	 35.86	-1	544093..544647	-	184	91772576	-	Mbur_0541	-	hypothetical protein
495	 37.08	-1	544640..544879	-	79	91772577	-	Mbur_0542	-	hypothetical protein
496	 40.20	0	545211..547322	-	703	91772578	-	Mbur_0543	-	hypothetical protein
497	 39.73	0	551107..551622	-	171	91772579	-	Mbur_0544	-	hypothetical protein
498	 37.38	0	551738..552058	+	106	91772580	-	Mbur_0545	-	hypothetical protein
499	 45.77	0	552087..552488	+	133	91772581	-	Mbur_0546	-	hypothetical protein
500	 40.76	0	553655..554314	-	219	91772582	-	Mbur_0547	-	K+ transport systems NAD-binding subunit
501	 42.39	0	554311..555768	-	485	91772583	-	Mbur_0548	-	Trk-type K+ transport systems membrane subunit
502	 42.27	0	558302..558592	+	96	91772584	-	Mbur_0551	-	hypothetical protein
503	 49.68	+1	558693..561053	+	786	91772585	-	Mbur_0552	-	CoB--CoM heterodisulfide reductase subunit A
504	 46.91	+1	561046..562356	+	436	91772586	-	Mbur_0553	-	formylmethanofuran dehydrogenase, subunit F
505	 31.17	-2	562442..562765	-	107	91772587	-	Mbur_0554	-	hypothetical protein
506	 34.88	-1	563335..564108	+	257	91772588	-	Mbur_0555	-	hypothetical protein
507	 40.36	0	564493..564990	+	165	91772589	-	Mbur_0556	-	hypothetical protein
508	 41.60	0	565256..565642	+	128	91772590	-	Mbur_0557	-	resolvase-like protein
509	 47.19	+1	565623..565889	+	88	91772591	-	Mbur_0558	-	hypothetical protein
510	 28.09	-2	566223..566927	+	234	91772592	-	Mbur_0559	-	hypothetical protein
511	 37.55	0	566998..568206	-	402	91772593	-	Mbur_0560	-	CRISPR-associated Cas1 family protein
512	 31.28	-2	568206..569324	-	372	91772594	-	Mbur_0561	-	hypothetical protein
513	 35.21	-1	569532..570170	+	212	91772595	-	Mbur_0562	-	hypothetical protein
514	 34.23	-1	570187..570519	+	110	91772596	-	Mbur_0563	-	hypothetical protein
515	 33.48	-1	570512..573184	+	890	91772597	-	Mbur_0564	-	DNA-directed DNA polymerase B
516	 27.66	-2	573210..574178	-	322	91772598	-	Mbur_0565	-	hypothetical protein
517	 37.79	0	574540..575481	+	313	91772599	-	Mbur_0566	-	transposase, IS4
518	 37.79	0	575915..576856	+	313	91772600	-	Mbur_0567	-	transposase, IS4
519	 35.36	-1	578143..580812	-	889	91772601	-	Mbur_0569	-	DNA-directed DNA polymerase B
520	 34.83	-1	580805..581137	-	110	91772602	-	Mbur_0570	-	hypothetical protein
521	 38.94	0	581150..581791	-	213	91772603	-	Mbur_0571	-	hypothetical protein
522	 31.11	-2	582060..582959	+	299	91772604	-	Mbur_0572	-	hypothetical protein
523	 37.43	0	582959..584155	+	398	91772605	-	Mbur_0573	-	CRISPR-associated Cas1 family protein
524	 33.33	-1	584257..584760	+	167	91772606	-	Mbur_0574	-	hypothetical protein
525	 31.74	-2	584836..585336	+	166	91772607	-	Mbur_0575	-	hypothetical protein
526	 28.06	-2	585575..586864	+	429	91772608	-	Mbur_0576	-	hypothetical protein
527	 33.09	-1	586871..589345	-	824	91772609	-	Mbur_0577	-	DNA-directed DNA polymerase B
528	 32.79	-2	589361..589543	-	60	91772610	-	Mbur_0578	-	hypothetical protein
529	 29.82	-2	589728..589955	-	75	91772611	-	Mbur_0579	-	hypothetical protein
530	 32.71	-2	589948..590586	-	212	91772612	-	Mbur_0580	-	hypothetical protein
531	 36.15	-1	591703..592908	+	401	91772613	-	Mbur_0582	-	CRISPR-associated Cas1 family protein
532	 41.28	0	592968..593747	-	259	91772614	-	Mbur_0583	-	hypothetical protein
533	 37.79	0	594187..595128	-	313	91772615	-	Mbur_0584	-	transposase, IS4
534	 34.95	-1	596233..597342	+	369	91772616	-	Mbur_0585	-	transposase, IS4
535	 43.46	0	597494..597898	+	134	91772617	-	Mbur_0586	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
536	 43.30	0	598004..598264	-	86	91772618	-	Mbur_0587	-	hypothetical protein
537	 40.03	0	599785..600366	+	193	91772619	-	Mbur_0590	-	DNA-3-methyladenine glycosylase I
538	 34.78	-1	600425..600562	-	45	91772620	-	Mbur_0591	-	hypothetical protein
539	 38.57	0	600697..601422	-	241	91772621	-	Mbur_0592	-	hypothetical protein
540	 42.41	0	602025..604790	+	921	91772622	-	Mbur_0593	-	CRISPR-associated helicase Cas3
541	 41.21	0	604805..606391	+	528	91772623	-	Mbur_0594	-	hypothetical protein
542	 41.20	0	606512..606943	+	143	91772624	-	Mbur_0595	-	hypothetical protein
543	 44.20	0	606965..608068	+	367	91772625	-	Mbur_0596	-	CRISPR-associated Cse4 family protein
544	 42.86	0	608089..608823	+	244	91772626	-	Mbur_0597	-	CRISPR-associated Cas5e family protein
545	 40.74	0	608833..609507	+	224	91772627	-	Mbur_0598	-	CRISPR-associated Cse3 family protein
546	 45.07	0	609520..610431	+	303	91772628	-	Mbur_0599	-	CRISPR-associated Cas1 family protein
547	 42.91	0	610412..610693	+	93	91772629	-	Mbur_0600	-	hypothetical protein
548	 40.83	0	615138..615524	+	128	91772630	-	Mbur_0601	-	hypothetical protein
549	 44.54	0	615605..616960	-	451	91772631	-	Mbur_0602	-	coenzyme F390 synthetase
550	 38.06	0	616974..618623	-	549	91772632	-	Mbur_0603	-	unusual protein kinase
551	 41.67	0	618895..619098	-	67	91772633	-	Mbur_0604	-	hypothetical protein
552	 47.35	+1	619816..621249	-	477	91772634	-	Mbur_0605	-	ketoisovalerate ferredoxin oxidoreductase, gamma subunit / ketoisovalerate ferredoxin oxidoreductase, beta subunit
553	 44.92	0	621252..622313	-	353	91772635	-	Mbur_0606	-	2-ketoisovalerate ferredoxin reductase
554	 42.79	0	622336..622557	-	73	91772636	-	Mbur_0607	-	ketoisovalerate ferredoxin oxidoreductase, delta subunit
555	 44.92	0	622766..624370	-	534	91772637	-	Mbur_0608	-	AMP-dependent synthetase and ligase
556	 43.24	0	624423..624977	-	184	91772638	-	Mbur_0609	-	cupin sensor transcriptional regulator
557	 43.25	0	625152..626543	-	463	91772639	-	Mbur_0610	-	hypothetical protein
558	 38.51	0	627708..628190	+	160	91772640	-	Mbur_0611	-	hypothetical protein
559	 47.61	+1	628292..631120	-	942	91772641	-	Mbur_0612	-	copper-translocating P-type ATPase
560	 42.16	0	631206..631409	-	67	91772642	-	Mbur_0613	-	heavy metal transport/detoxification protein
561	 44.19	0	631644..632564	+	306	91772643	-	Mbur_0614	-	quinolinate synthetase
562	 43.07	0	632604..633476	-	290	91772644	-	Mbur_0615	-	cobyrinic acid a,c-diamide synthase
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.